Lyun007429.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:12820595-12825089[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.028 0.4 11.3 1.0 1 23 68 90 68 90 0.98
2 21 1.8 25 5.7 3.4 1 23 94 116 94 116 0.96
3 21 3.5e-06 4.9e-05 23.7 0.9 1 23 121 143 121 143 0.99
4 21 1.3 18 6.2 1.7 1 23 148 170 148 170 0.96
5 21 3.3e-05 0.00047 20.6 2.9 1 23 175 197 175 197 0.99
6 21 0.024 0.34 11.6 3.0 1 23 202 224 202 224 0.99
7 21 0.014 0.2 12.3 0.9 1 23 229 251 229 251 0.99
8 21 0.099 1.4 9.6 0.8 1 23 256 278 256 278 0.98
9 21 2.1e-05 0.0003 21.2 0.8 1 23 283 305 283 305 0.99
10 21 0.1 1.4 9.6 1.3 1 23 310 332 310 332 0.98
11 21 0.0058 0.081 13.5 0.5 1 23 369 391 369 391 0.98
12 21 0.052 0.74 10.5 0.8 1 23 396 418 396 418 0.98
13 21 7.3e-05 0.001 19.5 0.9 1 23 423 445 423 445 0.99
14 21 4.3e-05 0.00061 20.2 0.9 1 23 450 472 450 472 0.99
15 21 0.041 0.58 10.8 0.7 1 23 477 499 477 499 0.98
16 21 2.3 33 5.3 0.3 12 23 507 518 507 518 0.93
17 21 0.0043 0.061 13.9 0.7 1 23 523 545 523 545 0.99
18 21 0.001 0.015 15.9 0.5 1 23 550 572 550 572 0.99
19 21 0.0059 0.084 13.5 0.8 1 23 577 599 577 599 0.99
20 21 0.06 0.84 10.3 1.2 1 23 604 626 604 626 0.98
21 21 0.00025 0.0036 17.8 0.4 1 21 631 651 631 652 0.96

Sequence Information

Coding Sequence
atggaTGCCGAATGTAATGAAAGTTATGCGATAAAATCTGAAATAAAACAGGAAGTTCttataaatgaaacattttcttttagtggaaaatatgaagATTATGGGAGTGAAGAACTGAAAACAGAGCCCGTAGATTTTGAAGCAGCTTTTAAATGCGAGGAAGATATTCATACGAAGCACACCAATAGTTCCAAATGTGAATATATTTGTactgaatgtaattataaaacacagtggaAATCGAATCTAAtgaaacatgtgaaaattcattctgatcaatataagtgtaaggaatgtgattacaaaacaccatggaagcacCGTTTTAAGGAACATGTTAaagttcatacaggtgatgagtataagtgtaatgaatgtgactataaaacagtgaggaaagatCAACTTAAAGTACATATccgaatccatactggtgatcaATATaggtgtaaggaatgtgacttcaaaacaccatggaagcaaaaatttaaggaacatgtaaaaatacatactggtgatcaatataaatgtaaggaatgtgactatagaACGGTGAGTAAATATTATCTTAAAACACACAtgaaaatccatactggtgatgaatataagtgcaatttATGTGGCTATAAAACAGTGAGTAAATTTCAACATAAAGCACACATCAGAATTCACACTGGcgatcaatataagtgtaaagaatgtgactacaaaacaccgtGGAAGCAGAGTTTAAAGTTACATATAaagattcatactggtgatgaatataagtgtaatgaatgtgacttcaaaacaatatggaagcagagtttaaaggaacatgtaaaaattcatactggtgatgactATAAATGTgatgaatgtgactttaaaacagtgagaaaagaTAAACTTAAAGCACACATTCGAATacatactggtgatgagtataagtgtaatgaatgttaCTTCAAAACAACATGGAAGAAGAGTTTAATTGCACACCTAAAAATTCATACTTTGCATCTGGAACTCAACAAACTACCAAAAACCATTTTACAATTAAGAAAGGTTGCaaatatgataaatttaaagttacatataaaagtgcatactggtgatgaatataaatgtaatcaaTGCAACTATAACACAGCAGGGATATATCAACTTACAGCACACATCAAAAATCAcattggtgatgaatataagtgtaatgaatgtaactacaaaacaccatggaagcagagtttaaaagaacatgtaaaaattcataccggtgatgagtataaatgtaatgaatgtgactttaaaactgTGAGGAAGGGTTTATTTAAAGCAcacatcagaatccatactggtgatgaatacaaaTGTACTGAATGCAACTATAAATCAGTGAGAAGAGATCAACTTAGAGCACACGTCAGAATCCATACTggggatgaatataagtgcacggaatgtgactacaaaacaccatggaagcagagtttaaaagaacatgtaaaaattcatactggtgatgaatataagtTGACGAAATATCAACTTAAAGCTCACATCAGAATCCATAATggagatgaatataagtgtaaggaatgtgattacaaaacaccatggcAGCAGAATTTAAAGTTACATATAAAAGtgcatactggtgatgaatataaatgtaatcaaTGCGACTATAAAACAGCGGGGATATATCAACTTACAGCACACATCAGAAACCAcattggtgatgaatataaatgtaatgaatgtgactataaaacagtgtggaaatatCGCCTTAAAGCACACATCAGAATTCATACCaatgatgagtataagtgtaaggtATGTGACTACAAAACGGCGTGGAAGCGGAATTTTAAGGAACATGTAAacattcatactggtgataaatataaatgtaatgaatgtgactttaaaacagttAGGAGAAATCAACTTAAAGCACATATCAGAATTCAGACTGGTGATGaattaaatgtaatgaatgtgaatACAAAACGCCTTGGAAGCAgtgtttaa
Protein Sequence
MDAECNESYAIKSEIKQEVLINETFSFSGKYEDYGSEELKTEPVDFEAAFKCEEDIHTKHTNSSKCEYICTECNYKTQWKSNLMKHVKIHSDQYKCKECDYKTPWKHRFKEHVKVHTGDEYKCNECDYKTVRKDQLKVHIRIHTGDQYRCKECDFKTPWKQKFKEHVKIHTGDQYKCKECDYRTVSKYYLKTHMKIHTGDEYKCNLCGYKTVSKFQHKAHIRIHTGDQYKCKECDYKTPWKQSLKLHIKIHTGDEYKCNECDFKTIWKQSLKEHVKIHTGDDYKCDECDFKTVRKDKLKAHIRIHTGDEYKCNECYFKTTWKKSLIAHLKIHTLHLELNKLPKTILQLRKVANMINLKLHIKVHTGDEYKCNQCNYNTAGIYQLTAHIKNHIGDEYKCNECNYKTPWKQSLKEHVKIHTGDEYKCNECDFKTVRKGLFKAHIRIHTGDEYKCTECNYKSVRRDQLRAHVRIHTGDEYKCTECDYKTPWKQSLKEHVKIHTGDEYKLTKYQLKAHIRIHNGDEYKCKECDYKTPWQQNLKLHIKVHTGDEYKCNQCDYKTAGIYQLTAHIRNHIGDEYKCNECDYKTVWKYRLKAHIRIHTNDEYKCKVCDYKTAWKRNFKEHVNIHTGDKYKCNECDFKTVRRNQLKAHIRIQTGDELNVMNVNTKRLGSSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-