Lyun007857.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001323.1:2214200-2216085[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.2 1.3e+02 3.4 2.9 1 23 87 109 87 109 0.96
2 18 0.65 9.2 7.1 0.3 1 23 147 169 147 169 0.96
3 18 0.00014 0.002 18.6 1.5 1 23 174 196 174 196 0.99
4 18 0.045 0.64 10.7 0.9 1 23 201 223 201 223 0.98
5 18 6.2e-05 0.00088 19.7 1.4 1 23 228 250 228 250 0.99
6 18 0.00014 0.002 18.6 1.5 1 23 255 277 255 277 0.99
7 18 0.0022 0.031 14.8 0.9 1 23 282 304 282 304 0.99
8 18 0.00011 0.0015 19.0 2.0 1 23 309 331 309 331 0.98
9 18 0.0054 0.076 13.6 0.7 1 23 336 358 336 358 0.98
10 18 0.00087 0.012 16.1 2.3 1 23 363 385 363 385 0.99
11 18 4.7e-05 0.00067 20.1 1.5 1 23 390 412 390 412 0.99
12 18 0.019 0.27 11.9 1.0 1 23 417 439 417 439 0.97
13 18 0.0002 0.0029 18.1 1.4 1 23 444 466 444 466 0.99
14 18 3.9e-06 5.5e-05 23.5 1.3 1 23 471 493 471 493 0.99
15 18 0.011 0.16 12.6 2.0 1 23 498 520 498 520 0.98
16 18 0.14 2 9.1 0.3 1 23 525 547 525 547 0.96
17 18 0.004 0.056 14.0 1.0 1 23 552 574 552 574 0.98
18 18 5.5e-05 0.00078 19.9 3.6 1 23 579 601 579 601 0.99

Sequence Information

Coding Sequence
ATGGATATTAATTCGATTGaaagttttgcaattaaatCAGAAGTGAATTTGACAGAAACTTTTTCGTTTTGTGGAGAATATGGAGattgtgaGAATGCAGAATTGAAAACGGACACATTAATTTATGAAGAATCGtttaaatgtaaggaagaagATAATCATGTTCCATTGCAACAATATTCTTGTAACGAGAGTAATTTTACGACAACGGATAaagattctctaatagaacattggaaaactactaaaaatgttcaatatttctgtaaaaaatgtaagtttaaaaCCAGGTTAGAATGGTCTATTAAAGAGCATTTAAAAAACCACAATGAAGTACATGTTAGATCTATTACTGAGGAATGTAATCTTAAGACACCAATGATTCTTCCGTTAATGCCACAGATAAAGATTCCTAGAGACGGTGAGGTTGGTGACCAATATATTTGTAGTGAATGTGATTATACcacattagtaaaaaattatttaaaaggacatgtaaaaattcatacaggtaataaatataagtgtaaagaatgtgattataaaacagcacgGAAAAATAGTCTGAAGGAtcacgtcaaaattcattcgggtgatgaatataaatgtgaaaaatgtgattataaaacagtgtggaaatggAGTCTGAAAGCTCATGTCAAAtatcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcgtaAACAAAGTTTGAATGATcatatcaaaattcacacaggtgataaatataaatgtaaagaatgtgattataaaacagcgcgGAAAAATAGTCTGAAGGAtcacgtcaaaattcattcaggtgatgaatataaatgtgaaaaatgtgattataaaacggtgtggaaaaGTAATTTGAAGgttcatgtcaaaattcacacaggtgatatatataagtgtaaagaatgtgattataaaacagtgcggaaatatTATTTGGAAGAACATATAAAAAATCACACAGGTGATaagtataaatgtaaagaatgtgattataaaacggcgTGGAAAAGTAATCTGAAGggtcatgtcaaaattcatacaggtgttgaatataaatgtagaGAATGCGATTATAAGACGGTGAGGAAAAATCGTCTAAAAGAtcacatgaaaattcatacaggcaatgaatataaatgtaaagaatgcgattataaaacagcacgGAAAAATAATctgaaggaacatgtcaaaattcatacaagtgatgtatataaatgtaaagaatgcgattataaaactgtgtggaagTCGAGTCTGATGGCTCATGTTAAatttcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcgtaAACAAAGTCTGAAcgatcatgtcaaaattcacacaggtgataaatataaatgtaaagaatgtgattatagtaCAGTTCGGAAAAGTAATctgaaggaacatgtcaaaattcatacaactgATCgttataagtgtaaagaatgtgattataaaacattgcggAAAGATTTTCTGgagaaacatgtaaaaattcatacaggtgatgaatataaatgtaaagattgtgattataaaacagtctgGATGGgtcttctaaaggaacatgtaaaaattcatacaggtgatgaatataaatgtaaagaatgcaattataaaacagtgtggaaaagtagtCTGAAAgctcatgtcaaaattcatacaggtgatgaatataagtgtaaaaaatgtgattacaaaactgTGCGGAAAAATAATCtgaagaaacatgtcaaaattcatacaggtgattaa
Protein Sequence
MDINSIESFAIKSEVNLTETFSFCGEYGDCENAELKTDTLIYEESFKCKEEDNHVPLQQYSCNESNFTTTDKDSLIEHWKTTKNVQYFCKKCKFKTRLEWSIKEHLKNHNEVHVRSITEECNLKTPMILPLMPQIKIPRDGEVGDQYICSECDYTTLVKNYLKGHVKIHTGNKYKCKECDYKTARKNSLKDHVKIHSGDEYKCEKCDYKTVWKWSLKAHVKYHTGDEYKCKECDYKTVRKQSLNDHIKIHTGDKYKCKECDYKTARKNSLKDHVKIHSGDEYKCEKCDYKTVWKSNLKVHVKIHTGDIYKCKECDYKTVRKYYLEEHIKNHTGDKYKCKECDYKTAWKSNLKGHVKIHTGVEYKCRECDYKTVRKNRLKDHMKIHTGNEYKCKECDYKTARKNNLKEHVKIHTSDVYKCKECDYKTVWKSSLMAHVKFHTGDEYKCKECDYKTVRKQSLNDHVKIHTGDKYKCKECDYSTVRKSNLKEHVKIHTTDRYKCKECDYKTLRKDFLEKHVKIHTGDEYKCKDCDYKTVWMGLLKEHVKIHTGDEYKCKECNYKTVWKSSLKAHVKIHTGDEYKCKKCDYKTVRKNNLKKHVKIHTGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-