Lyun007052.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:1873813-1877615[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.09 1.3 9.8 0.1 1 21 68 88 68 89 0.95
2 35 0.00072 0.01 16.4 2.4 1 23 175 197 175 197 0.98
3 35 0.014 0.2 12.3 0.6 1 23 202 224 202 224 0.99
4 35 0.097 1.4 9.7 0.8 1 23 229 251 229 251 0.98
5 35 3.3 46 4.9 0.5 1 23 256 278 256 278 0.93
6 35 0.16 2.3 8.9 0.5 1 23 283 305 283 305 0.98
7 35 8.3e-05 0.0012 19.3 2.0 1 23 328 350 328 350 0.99
8 35 0.00023 0.0032 18.0 1.3 1 23 355 377 355 377 0.99
9 35 5.3 74 4.2 1.3 1 23 382 404 382 404 0.97
10 35 7.2 1e+02 3.8 3.0 1 23 410 432 410 432 0.91
11 35 0.00055 0.0078 16.7 3.2 1 23 436 458 436 458 0.99
12 35 0.097 1.4 9.7 0.8 1 23 463 485 463 485 0.98
13 35 3.3 46 4.9 0.5 1 23 490 512 490 512 0.93
14 35 0.13 1.8 9.3 0.6 1 23 517 539 517 539 0.98
15 35 4.3 61 4.5 0.2 1 23 544 566 544 566 0.84
16 35 8.3e-05 0.0012 19.3 2.0 1 23 576 598 576 598 0.99
17 35 0.00023 0.0032 18.0 1.3 1 23 603 625 603 625 0.99
18 35 0.097 1.4 9.7 0.8 1 23 672 694 672 694 0.98
19 35 3.3 46 4.9 0.5 1 23 699 721 699 721 0.93
20 35 0.13 1.8 9.3 0.6 1 23 726 748 726 748 0.98
21 35 4.3 61 4.5 0.2 1 23 753 775 753 775 0.84
22 35 8.3e-05 0.0012 19.3 2.0 1 23 785 807 785 807 0.99
23 35 0.00023 0.0032 18.0 1.3 1 23 812 834 812 834 0.99
24 35 5.3 74 4.2 1.3 1 23 839 861 839 861 0.97
25 35 7.2 1e+02 3.8 3.0 1 23 867 889 867 889 0.91
26 35 0.00055 0.0078 16.7 3.2 1 23 893 915 893 915 0.99
27 35 0.097 1.4 9.7 0.8 1 23 920 942 920 942 0.98
28 35 3.3 46 4.9 0.5 1 23 947 969 947 969 0.93
29 35 0.13 1.8 9.3 0.6 1 23 974 996 974 996 0.98
30 35 4.3 61 4.5 0.2 1 23 1001 1023 1001 1023 0.84
31 35 8.3e-05 0.0012 19.3 2.0 1 23 1033 1055 1033 1055 0.99
32 35 0.00023 0.0032 18.0 1.3 1 23 1060 1082 1060 1082 0.99
33 35 5.3 74 4.2 1.3 1 23 1087 1109 1087 1109 0.97
34 35 7.2 1e+02 3.8 3.0 1 23 1115 1137 1115 1137 0.91
35 35 0.00055 0.0078 16.7 3.2 1 23 1141 1163 1141 1163 0.99

Sequence Information

Coding Sequence
atggATGTCGATTATAATGAAGGTTATCCgataaaatcagaagtgatcCTACAGGAAACATTTTCCCCTtgtgaaaaatatgaagattatggGAATGAAGAATTGAAAACGGAGCCAGTAGATACCAAAgagttttttaaatgtgaaatcAACGATAGTTTTGTGAAGCACATTGATGTATGTGGTGTACCTCCTtatcaatatatttgtaatgaatgtaattttattacaacggagaaagattctctaatagaacatttaaaaattactaaaaatattcaatatttttgtaaggtaTGTGACTTTAACACCCGATTGAGATGTTCGATAAGAGAACATTCCAAGAATCACAACAAGATTGGTGGTAGACTTATTACTAGAAAATGTAACTTTAAGACATTGCGAATTGTCACTTTAGCATCGGGATTGAAAACTCCAAAACGTCAACACGAATATATTGATTATAAAACGCAGATGAAAGAGGGACTAAAggattacgtaaaaatttataCTGAtcctgaatataagtgtaaggagtgtgattttaaaacacgaTTGAAAGATAGTCTAACGAAACATATGACAATTCATATGGgttatgaatataaatgtaaggaatgtgattataaaacggtatgggaAGCAAGCCTAAAaagacatttgaaaattcatactgatgatgagtacaagtgtaaggaatgtaattataaaacaccatggaaacaaagtctaaaggTACATGTGCAGATTCATAGTAATGATAAATAtgagtgtaaggaatgtgattttaaaacagtatggaaacggAGTATAGAGAAACAtgccaaaattcatactggtgatgaatataagtgtgaggaatgtaattacaaaacaccatggaaacaaagTTTAAAAGAACATGTGCAAATTCATAGTGGTGTAATTCAAAGtgAGAAACATGCCATAATTCATAGTGGTGTAATTCAAAGtggtaataaatataagtgtaacgaatgtgactataaaacagtgaggaaaagtagattaaaagaacacatgaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacagtgaggaaagataaactaaaggaacatgtgaaaattcataccggtgatgaatataagtgtaatgaatgtattTATACAACACCATGGAAACATATGCTAAGACTACATGTGAGAATTCATACTACTGAtcctgaatataaatgtaaggagtgtgattttaaaacactgtGGGAAGGAAACCTAAAAagacatgtgaaaattcatagtgatgaatataaatgtaaggaatgtaattataaaacaaatcagAGACTGAGTCTAAAGATTCATATGAAAACTCATACTGATGATGAGtacaagtgtaaggaatgtaattataaaacaccatggaaacaaagtctaaaggTACATGTGCAGATTCATAGTAATGATAAATAtgagtgtaaggaatgtgattttaaaacagtatggaaacggAGTATAGAGAAACAtgccaaaattcatactggtgatgaatataagtgtgaggaatgtaattacaaaacaccatggaaacaaagtttaaaagaacatgtgaaaattcatagtgataataaatatgaatgtaaggaatgtggttttaaaacagtatggaaacagAGTATAGAGAAACATGCCATAATTCATAGTGGTGTAATTCAAAGtggtaataaatataagtgtaacgaatgtgactataaaacagtgaggaaaagtagattaaaagaacacatgaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacagtgaggaaagataaactaaaggaacatgtgaaaattcataccggtgatgaatataagtgtaatgaatgtattTATACAACACCATGGAAACATATGCTAAGACTACATgaatgtaattataaaacaaatcagAGACTGAGTCTAAAGATTCATATGAAAACTCATACTGATGATGAGtacaagtgtaaggaatgtaattataaaacaccatggaaacaaagtctaaaggTACATGTGCAGATTCATAGTAATGATAAATAtgagtgtaaggaatgtgattttaaaacagtatggaaacggAGTATAGAGAAACAtgccaaaattcatactggtgatgaatataagtgtgaggaatgtaattacaaaacaccatggaaacaaagtttaaaagaacatgtgaaaattcatagtgataataaatatgaatgtaaggaatgtggttttaaaacagtatggaaacagAGTATAGAGAAACATGCCATAATTCATAGTGGTGTAATTCAAAGtggtaataaatataagtgtaacgaatgtgactataaaacagtgaggaaaagtagattaaaagaacacatgaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacagtgaggaaagataaactaaaggaacatgtgaaaattcataccggtgatgaatataagtgtaatgaatgtattTATACAACACCATGGAAACATATGCTAAGACTACATGTGAGAATTCATACTACTGAtcctgaatataaatgtaaggagtgtgattttaaaacactgtGGGAAGGAAACCTAAAAagacatgtgaaaattcatagtgatgaatataaatgtaaggaatgtaattataaaacaaatcagAGACTGAGTCTAAAGATTCATATGAAAACTCATACTGATGATGAGtacaagtgtaaggaatgtaattataaaacaccatggaaacaaagtctaaaggTACATGTGCAGATTCATAGTAATGATAAATAtgagtgtaaggaatgtgattttaaaacagtatggaaacggAGTATAGAGAAACAtgccaaaattcatactggtgatgaatataagtgtgaggaatgtaattacaaaacaccatggaaacaaagtttaaaagaacatgtgaaaattcatagtgataataaatatgaatgtaaggaatgtggttttaaaacagtatggaaacagAGTATAGAGAAACATGCCATAATTCATAGTGGTGTAATTCAAAGtggtaataaatataagtgtaacgaatgtgactataaaacagtgaggaaaagtagattaaaagaacacatgaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacagtgaggaaagataaactaaaggaacatgtgaaaattcatagtggtgatgaatataagtgtaatgaatgtattTATACAACACCATGGAAACATATGCTAAGACTACATGTGAGAATTCATACTACTGAtcctgaatataaatgtaaggagtgtgattttaaaacactgtGGGAAGGAAACCTAAAAagacatgtgaaaattcatagtgatgaatataaatgtaaggaatgtaattataaaacaaatcagAGACTGAGTCTAAAGATTCATATGAAAACTCATACTGATGATGAGtacaagtgtaaggaatgtaattataaaaacaccatggaaacaaagtctaaaggTACATGTGCAGATTCATAG
Protein Sequence
MDVDYNEGYPIKSEVILQETFSPCEKYEDYGNEELKTEPVDTKEFFKCEINDSFVKHIDVCGVPPYQYICNECNFITTEKDSLIEHLKITKNIQYFCKVCDFNTRLRCSIREHSKNHNKIGGRLITRKCNFKTLRIVTLASGLKTPKRQHEYIDYKTQMKEGLKDYVKIYTDPEYKCKECDFKTRLKDSLTKHMTIHMGYEYKCKECDYKTVWEASLKRHLKIHTDDEYKCKECNYKTPWKQSLKVHVQIHSNDKYECKECDFKTVWKRSIEKHAKIHTGDEYKCEECNYKTPWKQSLKEHVQIHSGVIQSEKHAIIHSGVIQSGNKYKCNECDYKTVRKSRLKEHMKIHTGDEYKCNECDYKTVRKDKLKEHVKIHTGDEYKCNECIYTTPWKHMLRLHVRIHTTDPEYKCKECDFKTLWEGNLKRHVKIHSDEYKCKECNYKTNQRLSLKIHMKTHTDDEYKCKECNYKTPWKQSLKVHVQIHSNDKYECKECDFKTVWKRSIEKHAKIHTGDEYKCEECNYKTPWKQSLKEHVKIHSDNKYECKECGFKTVWKQSIEKHAIIHSGVIQSGNKYKCNECDYKTVRKSRLKEHMKIHTGDEYKCNECDYKTVRKDKLKEHVKIHTGDEYKCNECIYTTPWKHMLRLHECNYKTNQRLSLKIHMKTHTDDEYKCKECNYKTPWKQSLKVHVQIHSNDKYECKECDFKTVWKRSIEKHAKIHTGDEYKCEECNYKTPWKQSLKEHVKIHSDNKYECKECGFKTVWKQSIEKHAIIHSGVIQSGNKYKCNECDYKTVRKSRLKEHMKIHTGDEYKCNECDYKTVRKDKLKEHVKIHTGDEYKCNECIYTTPWKHMLRLHVRIHTTDPEYKCKECDFKTLWEGNLKRHVKIHSDEYKCKECNYKTNQRLSLKIHMKTHTDDEYKCKECNYKTPWKQSLKVHVQIHSNDKYECKECDFKTVWKRSIEKHAKIHTGDEYKCEECNYKTPWKQSLKEHVKIHSDNKYECKECGFKTVWKQSIEKHAIIHSGVIQSGNKYKCNECDYKTVRKSRLKEHMKIHTGDEYKCNECDYKTVRKDKLKEHVKIHSGDEYKCNECIYTTPWKHMLRLHVRIHTTDPEYKCKECDFKTLWEGNLKRHVKIHSDEYKCKECNYKTNQRLSLKIHMKTHTDDEYKCKECNYKNTMETKSKGTCADS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-