Lyun004421.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000713.1:1202765-1216630[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.0007 0.0099 16.4 3.0 1 23 64 86 64 86 0.97
2 28 0.0039 0.056 14.0 2.3 1 23 91 113 91 113 0.99
3 28 0.00022 0.0032 18.0 3.0 1 23 167 189 167 189 0.99
4 28 2.6 36 5.2 2.8 1 23 194 216 194 216 0.95
5 28 0.0061 0.086 13.5 3.1 1 23 221 243 221 243 0.98
6 28 0.0053 0.074 13.6 1.1 1 23 248 270 248 270 0.98
7 28 0.016 0.23 12.1 5.0 1 23 275 297 275 297 0.98
8 28 0.0096 0.14 12.8 4.3 2 23 303 324 302 324 0.96
9 28 0.01 0.15 12.7 2.4 2 23 330 351 329 351 0.96
10 28 2.2 31 5.4 2.5 1 23 356 378 356 378 0.93
11 28 0.26 3.7 8.3 1.4 1 23 383 405 383 405 0.97
12 28 0.033 0.47 11.1 1.5 1 23 410 432 410 432 0.98
13 28 0.026 0.37 11.4 0.6 1 23 437 459 437 459 0.97
14 28 0.063 0.88 10.3 4.1 1 23 464 486 464 486 0.98
15 28 0.053 0.76 10.5 2.0 1 23 491 513 491 513 0.96
16 28 0.2 2.8 8.7 5.3 1 23 518 540 518 540 0.97
17 28 0.024 0.33 11.6 3.0 1 23 545 569 545 569 0.93
18 28 0.036 0.51 11.0 2.2 3 23 642 662 640 662 0.95
19 28 0.0054 0.076 13.6 2.4 1 23 667 689 667 689 0.99
20 28 0.00039 0.0056 17.2 1.7 1 23 692 714 692 714 0.99
21 28 6.5e-05 0.00092 19.7 3.0 1 23 719 741 719 741 0.99
22 28 0.055 0.77 10.4 1.7 1 23 746 768 746 768 0.97
23 28 8.4e-05 0.0012 19.3 2.5 1 23 773 795 773 795 0.99
24 28 0.46 6.5 7.5 1.6 1 23 800 823 800 823 0.92
25 28 0.00078 0.011 16.3 3.8 1 23 828 850 828 850 0.99
26 28 0.088 1.2 9.8 5.9 1 23 855 877 855 877 0.98
27 28 0.0025 0.035 14.7 1.9 1 23 882 904 882 904 0.99
28 28 0.017 0.25 12.0 4.1 1 23 909 931 909 931 0.98

Sequence Information

Coding Sequence
atggatACAAATAGCAGTGaaagttgtgcaataaaatcagaagtgattgtaaacgaaacattttcgttttatgaaaaatatgaagATTATGATACCGCAGAAGTGAAATTGGAGCCAGAGGATGTCAAACAACGtaagaaagaaaatgattttGCAGAACACGTTAATCTGTATGCTATGCctgtacaatatttttgtaatgaatgcaCCTATAGAACAAAAAGCAAAAGCTACTTAAAGCGGCATGTGCagattcatacaggtgatgaatataagtgtaatgaatgtgattacaaaacatgGTCAGAATATTATCTAAAGAAGCATATAAAAACTCATGCCAGTGTTGAATATGGTTATGAAACATTGCAGGAATGTAAACTAATAgatcatttgaaaattcatgcaggtAATGAATATGAGTataaggaatgtaattataaaacgtcATTGAAACACCTCGTACAACCCcatgaaaatatttgtataggTAATGAGTATAAGTGCactgaatgtgattataaaacaatgtcaaatcgttatttaaaaagacatatgaaaattcatgcaCGTGTAgaatacaagtgtaaggaatgtaactataaaacattgTCAGAACGTTATCGAaaagaacatatgaaaattcatataggtgttgagtataagtgtaataaatgtgattatgaaacatTGCGGAAACGCAATCTTAAAGACCATATGAAAAATCATACCGGTGTTAAATATcggtgtaaggaatgtgattacgAAACATTGCGCGAACGTAATTTAAAAGaccatatgaaaattcacaccggtattgaatataaatgtaaggaatgtgattataaaacattgcaaAAACGTAATCTAAAGCACCACCTAAAAATTCATACGATTCTTGAActtaaatgtaatgaatgcgattataaaacattcCATGAACGTAATTTCAAgaatcatatgaaaattcatataggTGTTGAACAggaatgtaaggaatgtaattataaaacgctgaagaaatataatttaaaagtgcATATGAAAAcgcatactggtgatgaatataagtgtaacgaatgtgactataaaacccCTTGGAAACATCTCATACAAactcataaaaaaattcatatggaTGCTGAGTATAAGTGtattgaatgtgattataaaacaatgttgGAACGTTATTTAAAgagacatatgaaaattcatgcaggtgttgaatataagtgtagggaatgtggttataaaacatTGTCAGAACgttatctaaaggaacacatgAAAATACATACCGGTATTGAATATAactgtaatgaatgtgattatagagCATTGCGGGAACGTAATCTAAAAGaccatatgaaaattcatatgggtgtagaatataaatgtaaaaaatgtgattataaaacattgcagGAACGTAATCTAAAGTACCATATGAAGAATCATacaggtgttgaatataagtgtaaggaatgtgattataaaacattgcgaGAACGCAATcttaaaaaccataaagaaattcattttggtattgaatataattgtaaggaatgtgattacaaaacattgCAGAAACGTAATCTAAAGCACCACAAGAAGGTTCATATGGGTGTTGAGTATAAGTGTgataaatgtgattataaaactatgtCTGAACgttatctaaaggaacatatgaaaatgaaatttcataGATGTGTTGAATATAAacaTCCTGTATGTAATACAATTAATCTAATGTTTGAGGTTATGAGCATAGATAAAtcaatcataaaaattaattacagtttatttgtaatggaaGTTAatgATTAcggaaatgaagaaattaaattagacCTTGTGGATTTCGAAGATTCTTTTAAACGCAAGAAAGATGATCTTTCAAAGTCCACGAAAATGCTTTTTTGTAACAAATGCGTGTACAAAAcaaaaagcagaagtaattttcaGCGACATGTGTATATTCATACACGTGATacatataagtgtaaggaatgtgattatgaaacaaTTGTACAGCGTTATTTTAAGAGCCATATGAAAAATCATGTTAAatacaagtgtaaggaatgcaACTATAAAACAATATCCAAACCTTATCTTAagcaacatataaaaattcataccggtattgaatacaagtgtaaggaatgtgattataaaacatcacagAAACGTTATCTAATGaagcatatcaaaattcatgcTGGTCTTGAATATAAGTGCAAGAattgtgattacaaaacattgCAGAAATATAATCTAATGGGCCATGTGAAAATTCATGCTGGTgttgaatacaagtgtaaggaatgcgaCTTTAAGACAACATCCAAAGATTATCTAAggcaacatataaaaattcatagtggtattgaatacaagtgtaaggaatgcgatTATAGAACATTGCAGAAACCTTATCTAATGAGTCATATCACATTTCAGCATACTAGTgttgaatacaagtgtaaggaatgtgactataaaacaacaTCCAAACCTTGTCTAAGCcgacatataaaaattcataatggtattgaatacaagtgtaaggaatgcaattataaaacattgcagAAATGTAATCTAATGAAGCATGTGAAAACTCATGCTGGTCTTGAATACAAGTGTATGGAATGCGACTATGAAACATTGCAGAAATATAATCTACTGAAACATATGAAAACTCATGCTAGTCttgaatacaagtgtaaggaTTGCGACTATAAAACAATATTCGAACATTATCTAAAGCAACATACAAACATTCATGTAGGTGTTGAATACGAATGTGAgtaa
Protein Sequence
MDTNSSESCAIKSEVIVNETFSFYEKYEDYDTAEVKLEPEDVKQRKKENDFAEHVNLYAMPVQYFCNECTYRTKSKSYLKRHVQIHTGDEYKCNECDYKTWSEYYLKKHIKTHASVEYGYETLQECKLIDHLKIHAGNEYEYKECNYKTSLKHLVQPHENICIGNEYKCTECDYKTMSNRYLKRHMKIHARVEYKCKECNYKTLSERYRKEHMKIHIGVEYKCNKCDYETLRKRNLKDHMKNHTGVKYRCKECDYETLRERNLKDHMKIHTGIEYKCKECDYKTLQKRNLKHHLKIHTILELKCNECDYKTFHERNFKNHMKIHIGVEQECKECNYKTLKKYNLKVHMKTHTGDEYKCNECDYKTPWKHLIQTHKKIHMDAEYKCIECDYKTMLERYLKRHMKIHAGVEYKCRECGYKTLSERYLKEHMKIHTGIEYNCNECDYRALRERNLKDHMKIHMGVEYKCKKCDYKTLQERNLKYHMKNHTGVEYKCKECDYKTLRERNLKNHKEIHFGIEYNCKECDYKTLQKRNLKHHKKVHMGVEYKCDKCDYKTMSERYLKEHMKMKFHRCVEYKHPVCNTINLMFEVMSIDKSIIKINYSLFVMEVNDYGNEEIKLDLVDFEDSFKRKKDDLSKSTKMLFCNKCVYKTKSRSNFQRHVYIHTRDTYKCKECDYETIVQRYFKSHMKNHVKYKCKECNYKTISKPYLKQHIKIHTGIEYKCKECDYKTSQKRYLMKHIKIHAGLEYKCKNCDYKTLQKYNLMGHVKIHAGVEYKCKECDFKTTSKDYLRQHIKIHSGIEYKCKECDYRTLQKPYLMSHITFQHTSVEYKCKECDYKTTSKPCLSRHIKIHNGIEYKCKECNYKTLQKCNLMKHVKTHAGLEYKCMECDYETLQKYNLLKHMKTHASLEYKCKDCDYKTIFEHYLKQHTNIHVGVEYECE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-