Lyun011464.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001931.1:2142793-2157614[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00047 0.0067 16.9 3.4 1 23 133 155 133 155 0.98
2 17 0.00011 0.0015 19.0 1.6 1 23 160 182 160 182 0.99
3 17 0.0021 0.029 14.9 0.7 1 23 187 209 187 209 0.99
4 17 5.4e-05 0.00077 19.9 1.9 1 23 214 236 214 236 0.98
5 17 3.1e-05 0.00043 20.7 0.5 1 23 241 263 241 263 0.98
6 17 0.016 0.22 12.1 0.5 1 23 268 290 268 290 0.99
7 17 0.001 0.014 15.9 1.0 1 23 295 317 295 317 0.99
8 17 0.018 0.26 12.0 0.7 1 23 322 344 322 344 0.98
9 17 0.00014 0.002 18.6 1.7 1 23 495 517 495 517 0.98
10 17 0.00027 0.0039 17.7 1.6 1 23 522 544 522 544 0.98
11 17 0.00044 0.0062 17.0 0.7 1 23 549 571 549 571 0.98
12 17 0.00088 0.012 16.1 0.7 1 23 576 598 576 598 0.99
13 17 0.053 0.76 10.5 3.2 1 23 603 625 603 625 0.97
14 17 0.017 0.23 12.1 0.3 1 23 630 652 630 652 0.98
15 17 0.0019 0.027 15.0 1.2 1 23 657 679 657 679 0.98
16 17 0.0004 0.0056 17.2 3.3 1 23 684 706 684 706 0.98
17 17 0.00051 0.0073 16.8 1.0 1 23 711 733 711 733 0.99

Sequence Information

Coding Sequence
atggatgttgattttattgaaagtaatgcgataaaatctgaagtgattttaaaagaaacgttTTCGTTTTGTGGATCATACCAAGATTATGgggataaagaactaaaaacagagccagtagattacgaagaatcttttaaatataaCGAAGAAGAAGAGCAGAAGGGCGTGCATGCTGTTCTGATGCAACAAGTTTCTTACAATGAGTGTGACATTACAACCCATTTACAATGTTCAATAAAAAAGGATTTTGGGATTCACAATGGGGTAGATGATAAATATATGAATGAAGAAACACCACAGGGGAATACTCCAAAAAGTGGTGACGAATGTAATTATTCTACATTAATCAAAAGCTCACAAAgaaaacatgttaaaattcataaaggggctgaatataactgtaaaaaatgtgactataaaacagtgcgaaaagatcatCTAAAgatacatgtcaaaattcatacaggtgataagtataaatgtaaagaatgtgactacaaaacggTGCGAAAAgattatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtagtctaaaggaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtagttataaaacagtacggcaaagtaatctaaagcaacatgtccaaattcatacaagtgacaaatatgagtgtaaagaatgtgattataaagcagcacggcaaagtagtctaaagaaccatatcaaaattcatacaggtgatgaatacaagtgtaaagaatgtgattataaaacagtgtggccaAGTAGGttaaaggaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtagtctaaaggaacatatgaaaattcatacaggtgatgaatataagtgtaacgaatgtgattataaaacaatatggcgAAGtactctaaaggaacatgtcaaaattcatacaagtgacaaatatgagtgtaaagaatgtgactttaaaacagtgtggaaaagAATGGATGTCGATTctattgaaagttgtgcaataaaatctgaagtaattttaacagaaacgtttTCGTTTTGTGGTGAATACAAAGACTATAgggataaagaactaaaaacagagccagtagattacgaagaatcttttaaatgtaaggaagaaaaaaagcaaaaagGCGTGCATGCTGTTCTGATGCAACAAGTTTCTTATAATGAGTGTGACATTACAACCCAGTTACAAGGTTCAGTAAAAAAGGATTTCGGGATTCACAGTGGGGTTGatgataattatattattgaagGAACACCACAGGGGAAAACTCCAAAAAGTGGTGACGAATGTAATTATTCTACATTAATCAAACGCTCTCAAAGAAGACGTGTTAAAATTCCTAAACGggctgaatataagtgtaaaggatgtgattataaaacagtgcagaaaagtagtctaaaggaacatgtcaagaACCATAGAGGTGACATATATAAGTGTagagaatgcgattataaaacagtgcgaaaagatcaaCTAAAGGTACATGTCAAAaatcatacaggtgataaatatgaatgtaaagaatgtgactataaaacagtgcgaaaagattaTCTAAAgggacatgtcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattataaaacagtgtggcaaagtaatctaaagaaacatgtcaaaattcatacaagtgacaaatatgaatgtaaagaatgtgattataaaacagtatggcaaaGTCATCTAAAGCAGCATGTACACATTCATACAagtgacaaatatgagtgtaaagaatgtgattttaaatcaGCATGGCAAAGTAATCTAagggaacatgtcaaaatccatAGAGGCGACaaatataactgtaaagaatgtgactataaaacggtgCGAAAAGATCGTCTAAAGgaccatgtcaaaattcatacaggcgacgaatataaatgtgaagaatgtgactataaaacagtgcgaaaagatcatctaaaggaacatttcaaaattcatacaggtgataaatataagtgtaaagaatgtggttataaaacagtgtggcaaagtaatctaaaggaacatgtcaaaactcatacaggtgacaaatgtaagtga
Protein Sequence
MDVDFIESNAIKSEVILKETFSFCGSYQDYGDKELKTEPVDYEESFKYNEEEEQKGVHAVLMQQVSYNECDITTHLQCSIKKDFGIHNGVDDKYMNEETPQGNTPKSGDECNYSTLIKSSQRKHVKIHKGAEYNCKKCDYKTVRKDHLKIHVKIHTGDKYKCKECDYKTVRKDYLKEHVKIHTGDEYKCKECDYKTVWQSSLKEHIKIHTGDEYKCKECSYKTVRQSNLKQHVQIHTSDKYECKECDYKAARQSSLKNHIKIHTGDEYKCKECDYKTVWPSRLKEHIKIHTGDEYKCKECDYKTVWQSSLKEHMKIHTGDEYKCNECDYKTIWRSTLKEHVKIHTSDKYECKECDFKTVWKRMDVDSIESCAIKSEVILTETFSFCGEYKDYRDKELKTEPVDYEESFKCKEEKKQKGVHAVLMQQVSYNECDITTQLQGSVKKDFGIHSGVDDNYIIEGTPQGKTPKSGDECNYSTLIKRSQRRRVKIPKRAEYKCKGCDYKTVQKSSLKEHVKNHRGDIYKCRECDYKTVRKDQLKVHVKNHTGDKYECKECDYKTVRKDYLKGHVKIHTGDEYKCEECDYKTVWQSNLKKHVKIHTSDKYECKECDYKTVWQSHLKQHVHIHTSDKYECKECDFKSAWQSNLREHVKIHRGDKYNCKECDYKTVRKDRLKDHVKIHTGDEYKCEECDYKTVRKDHLKEHFKIHTGDKYKCKECGYKTVWQSNLKEHVKTHTGDKCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-