Lyun000887.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000125.1:476817-478956[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.05 0.71 10.6 0.3 1 23 66 88 66 88 0.95
2 22 0.0052 0.073 13.7 3.0 1 23 93 115 93 115 0.98
3 22 0.00016 0.0022 18.4 2.6 1 23 120 142 120 142 0.98
4 22 0.0021 0.029 14.9 2.7 1 23 174 196 174 196 0.99
5 22 0.37 5.2 7.8 2.6 1 23 201 223 201 223 0.96
6 22 0.0004 0.0056 17.2 4.4 1 23 228 250 228 250 0.98
7 22 0.0003 0.0042 17.6 5.2 1 23 255 277 255 277 0.99
8 22 0.00046 0.0065 17.0 5.0 1 23 282 304 282 304 0.99
9 22 0.032 0.45 11.2 3.1 1 23 309 331 309 331 0.98
10 22 0.15 2.2 9.0 2.4 1 23 336 358 336 358 0.97
11 22 0.00081 0.012 16.2 0.7 1 23 363 385 363 385 0.98
12 22 0.0015 0.022 15.3 3.2 1 23 390 412 390 412 0.98
13 22 0.75 11 6.9 0.7 1 23 417 439 417 439 0.91
14 22 0.00017 0.0025 18.3 3.3 1 23 444 466 444 466 0.99
15 22 0.00016 0.0023 18.4 1.5 1 23 471 493 471 493 0.97
16 22 0.0014 0.02 15.4 2.1 1 23 498 520 498 520 0.99
17 22 0.11 1.6 9.4 1.3 1 23 525 547 525 547 0.97
18 22 0.0085 0.12 13.0 2.9 1 23 552 574 552 574 0.99
19 22 0.0011 0.016 15.8 2.9 1 23 579 601 579 601 0.97
20 22 0.005 0.071 13.7 1.6 1 23 606 628 606 628 0.96
21 22 0.00083 0.012 16.2 6.0 1 23 633 655 633 655 0.98
22 22 0.0025 0.035 14.7 1.4 1 23 660 682 660 682 0.99

Sequence Information

Coding Sequence
ATGGATGTTGATTATAATAAAAGTTGCTCGATAAAATCCGAAACTGTACAGGAAACATTCTCATACTGTGGTGAAAATTATGAAGATTATGGGaatgaagaattgaaaacaGATCTGGTAGATTtggaaaaatcatttataaaatttgaacaagAGCATAATGTTTTAGAGTTCACCAAtgtacccacatgtcaatatatttgtaatgagtgtaattttattacaacggaGAAAGATTCTCTAATACAACACTCGACAATTCATAGTAGTCTTGAATATCAGTgtcaagaatgtgattataaaacacgatGGAAACACAATCTAAAGCGACATTTGGAAATTCATAGTGAccatgaatataagtgtatggaatgtgattataaaacatcacagAAACGGAATCTTAAGAAACATTTGACAATTCATAGTGgtcatgaatataagtgtatggaatgtgattataaaacatggtGGAAACATAAGCTAATACAACATATGAAGATTCATACTAAGGCAGAATATAAGTGtcatgaatgtgattataaaacagcatggaaaaaGAATCTAATGCAACATATGAAAGTTCATAGTGAAGAAGAATATGCGTGTCataaatgtgactataaaacacgaTGGAAACCAAGTCTAAAGCGACATTTTGAAATCCATaatgatgatgaatataagtgtatggaatgtcattataaaacatcacggaaacagaatctaaagcgACATTTGGAAATTCATAGTGATCTTGAATTTAAGTGtacggaatgtgattataaaacatcacggAAACAGAATTTTATGCATCATTTGAGAATTCATAGTGAGGTGGAATATAAGTGtcatgaatgtaattataaaacacgaTTGAAAAAGAATCTAAtgcaacatatgaaaattcatactgaggaagaatataagtgtcatgaatgtgattataaaacacgttggaaacagagtctaaagcaacatttggAAATTCATAGTGattatgaatataagtgtatgaaatgtgattataaaacattacgGAAACGGAAACTAGAGAAACATTTGGAAATTCATGATGATCGTGAATTTAAGTGTATGGACTGTGATTATGAAACATCGTCGAAACAAAGTCTAACGCAACATTTGGAAATTCATGGTGATCATGGATATAGGTGtatggaatgtgattataaaacatcacggAAACGGAATTTTAAGCAACATTTGACAATTCATAGTGATCATCAATATCAGTgtgaggaatgtgattataaaacacgatGGAAACAGATTCTAAAGCAACATTTGCAAATTCATAGTgatcatgaatataagtgcatggaatgtgattataaaacatcacggAAACAGAATTTTAAGCAACATTTGAGAATTCATAGTGGTCATGAATATAACTGtatggaatgtgattataaaacatcacggAAACAGAATCTTAAGCGACATTTGGAAATTCATAGTGTTCATGGATTTAAGTGtatggaatgtgattataaaacaccacggAAACTGAATTTTAAGCAACATTTGAgaattcatagtggtgatgaatataagtgtaatgaatgtgattataaaacatcatggaAACAGAATATAAAGCAACATTTGACAATTCATAGTgatcatgaatataagtgtaaggaatgtgattataaaacacgatGGAAAAAGAGTCTAAaacaacatttgaaaattcattgtggtcatgaatataagtgtaaggaatgtgattataaaacatcacagAAACAAGACTTAAAGCAACATTTCACAATTCATAGTGATCATGTATATAAGTGtatggaatgtgattataaaacatcactgaaacagaatctaaagcgACATTCGGAAATTCATAGTGATCATGAATTTAAGTGtacggaatgtgattataaaacatcgcggaaacaaaattttatgcatCATTTGAGAAATCATAGTGGTCGTGTATAtaggtgtaaagaatgtgatcaTACAACAGcatggaaaaataatttaaaggcacatattaaaattcatatgcGTGATAAACatctaaaacttaaaaaaatgtga
Protein Sequence
MDVDYNKSCSIKSETVQETFSYCGENYEDYGNEELKTDLVDLEKSFIKFEQEHNVLEFTNVPTCQYICNECNFITTEKDSLIQHSTIHSSLEYQCQECDYKTRWKHNLKRHLEIHSDHEYKCMECDYKTSQKRNLKKHLTIHSGHEYKCMECDYKTWWKHKLIQHMKIHTKAEYKCHECDYKTAWKKNLMQHMKVHSEEEYACHKCDYKTRWKPSLKRHFEIHNDDEYKCMECHYKTSRKQNLKRHLEIHSDLEFKCTECDYKTSRKQNFMHHLRIHSEVEYKCHECNYKTRLKKNLMQHMKIHTEEEYKCHECDYKTRWKQSLKQHLEIHSDYEYKCMKCDYKTLRKRKLEKHLEIHDDREFKCMDCDYETSSKQSLTQHLEIHGDHGYRCMECDYKTSRKRNFKQHLTIHSDHQYQCEECDYKTRWKQILKQHLQIHSDHEYKCMECDYKTSRKQNFKQHLRIHSGHEYNCMECDYKTSRKQNLKRHLEIHSVHGFKCMECDYKTPRKLNFKQHLRIHSGDEYKCNECDYKTSWKQNIKQHLTIHSDHEYKCKECDYKTRWKKSLKQHLKIHCGHEYKCKECDYKTSQKQDLKQHFTIHSDHVYKCMECDYKTSLKQNLKRHSEIHSDHEFKCTECDYKTSRKQNFMHHLRNHSGRVYRCKECDHTTAWKNNLKAHIKIHMRDKHLKLKKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-