Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000513.1:209679-214184[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 5.1 72 4.2 0.1 1 20 56 75 56 77 0.91

2 26 0.0028 0.04 14.5 0.6 1 23 132 154 132 154 0.98

3 26 0.15 2.2 9.0 2.9 1 23 186 208 186 208 0.97

4 26 0.0062 0.088 13.4 1.9 1 23 213 235 213 235 0.98

5 26 0.0026 0.037 14.6 1.0 1 23 240 262 240 262 0.97

6 26 2.5 36 5.2 0.5 1 23 267 289 267 289 0.96

7 26 0.0058 0.082 13.5 2.2 1 23 294 316 294 316 0.98

8 26 0.66 9.4 7.0 2.3 1 23 321 343 321 343 0.96

9 26 0.00016 0.0022 18.4 1.6 1 23 348 370 348 370 0.99

10 26 0.32 4.5 8.0 0.5 1 23 375 397 375 397 0.95

11 26 0.0013 0.018 15.6 0.9 1 23 402 424 402 424 0.99

12 26 0.00037 0.0052 17.3 2.1 1 23 429 451 429 451 0.99

13 26 0.0031 0.044 14.4 1.9 1 23 456 478 456 478 0.98

14 26 0.025 0.35 11.5 2.5 1 23 483 505 483 505 0.98

15 26 0.035 0.5 11.0 3.1 1 23 510 532 510 532 0.99

16 26 0.076 1.1 10.0 0.6 1 23 581 603 581 603 0.98

17 26 0.88 13 6.6 1.6 1 19 613 631 613 635 0.88

18 26 0.0096 0.14 12.8 0.6 1 23 640 662 640 662 0.99

19 26 9.8e-05 0.0014 19.1 1.7 1 23 667 689 667 689 0.99

20 26 0.28 4 8.2 0.8 1 23 721 743 721 743 0.98

21 26 0.16 2.3 9.0 0.9 1 23 748 770 748 770 0.98

22 26 0.11 1.6 9.5 1.7 1 23 775 797 775 797 0.98

23 26 0.00028 0.004 17.6 2.2 1 23 802 824 802 824 0.98

24 26 9.3e-06 0.00013 22.3 1.8 1 23 829 851 829 851 0.99

25 26 0.00039 0.0055 17.2 1.6 1 23 856 878 856 878 0.98

26 26 1.2e-05 0.00017 21.9 4.2 1 23 883 905 883 905 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	5.1	72	4.2	0.1	1	20	56	75	56	77	0.91
2	26	0.0028	0.04	14.5	0.6	1	23	132	154	132	154	0.98
3	26	0.15	2.2	9.0	2.9	1	23	186	208	186	208	0.97
4	26	0.0062	0.088	13.4	1.9	1	23	213	235	213	235	0.98
5	26	0.0026	0.037	14.6	1.0	1	23	240	262	240	262	0.97
6	26	2.5	36	5.2	0.5	1	23	267	289	267	289	0.96
7	26	0.0058	0.082	13.5	2.2	1	23	294	316	294	316	0.98
8	26	0.66	9.4	7.0	2.3	1	23	321	343	321	343	0.96
9	26	0.00016	0.0022	18.4	1.6	1	23	348	370	348	370	0.99
10	26	0.32	4.5	8.0	0.5	1	23	375	397	375	397	0.95
11	26	0.0013	0.018	15.6	0.9	1	23	402	424	402	424	0.99
12	26	0.00037	0.0052	17.3	2.1	1	23	429	451	429	451	0.99
13	26	0.0031	0.044	14.4	1.9	1	23	456	478	456	478	0.98
14	26	0.025	0.35	11.5	2.5	1	23	483	505	483	505	0.98
15	26	0.035	0.5	11.0	3.1	1	23	510	532	510	532	0.99
16	26	0.076	1.1	10.0	0.6	1	23	581	603	581	603	0.98
17	26	0.88	13	6.6	1.6	1	19	613	631	613	635	0.88
18	26	0.0096	0.14	12.8	0.6	1	23	640	662	640	662	0.99
19	26	9.8e-05	0.0014	19.1	1.7	1	23	667	689	667	689	0.99
20	26	0.28	4	8.2	0.8	1	23	721	743	721	743	0.98
21	26	0.16	2.3	9.0	0.9	1	23	748	770	748	770	0.98
22	26	0.11	1.6	9.5	1.7	1	23	775	797	775	797	0.98
23	26	0.00028	0.004	17.6	2.2	1	23	802	824	802	824	0.98
24	26	9.3e-06	0.00013	22.3	1.8	1	23	829	851	829	851	0.99
25	26	0.00039	0.0055	17.2	1.6	1	23	856	878	856	878	0.98
26	26	1.2e-05	0.00017	21.9	4.2	1	23	883	905	883	905	0.99

Sequence Information

Coding Sequence: ATGGATGTTGACTCTATTGAAAATTGTGCAATCaaatctgaagtgattttaacagaaacattttcctTCCATGGAAAATATGGAGattcCGGGAGTGAAGAACTGAAAACGGAGCCAGTAGATTACGAAGAAAATGATTCGGTAGAGGACGTGGCGAAGCAACAATATTCTTGtagggaatgtaattttatgacaACGGAAGAAGATTCTCTAATAGGACATTCGaagattacaaaaaatgttgggAATTCTTGCAAGGAATGTAACTTCACAGCCTCATTAGAATGTTCCATAAAAGAGCATTTGAGGATTCACAACAGAATAAATGATGGATATACGATTGAGGAATATAGTTTTAATGCACCACAGCTGAAAACTCTAACAAATGacgaatatatttgtaatgaatgtaattatactacATCGATCAAAAATGATCTACGTacacatgtgaaaattcataacATACATGAATATACTTGTgaaaaatgtgactataaaacactaTGTAAACATTCTCTCACagcacatgtcaaaattcatgtGGGTGATGtacataagtgtaaagaatgtgattataaaacattgcggAAAATTCAactaaaagaacatgtcaaaattcacacaggtgatgaatataagtgcacagaatgtgattataaaacagtgtggaaaagtaatctaaacaaacacttcaaaattcatgcaggtgatatatataagtgtaaagaatgtgattataaaacagtccGCGAACAgcttctaaagcaacatgtcacaattcatacaggcgatgtaTATAAGTGTATACAATGCGATTATagaacagtgtggaaaaatcaactaaaggcACATGTCAAAATACACACatgtgatgaatataagtgtaaagaatgtgattataaaacagtctggaaaagtaatctaaacaaacacttcaaaattcacacaggtgccgaatataagtgtaaagactgTGACTATagaacagtgtggaaaaatagactaaaggaacatctcaaaTTTCACatgggtgatgaatataaatgcaaagaatgcgattataGAACAGTACGGAAgaatcaactaaaggaacatgttaaaattcacacaggtgatgaatataagtgtaaagactgTGATTATAGAACAGTTTGGAAACCGAGACTAaatgaacatgtaaaaattcataacggtgataaatataagtgtaaagactgTGACTATAGTACAGTGTGgaaatatcaactaaaggaacatatcaaaattcacacaggtgatgaatataagtgcaaagaatgcaattataaaacagtgcggaagaatcaactaaaggaacatgttaaaattcacacaggtgacaaatataagtgtaaagactgTGATTATAGAACAGTGCGGAAACGGAGACtaaatgaacatgaaaaaattcattctggtgatatatataaatgtaaagaatgtgattataaaacagtatggaaatttTCTCTAAAATCACATATTAAAAGACATACAGGTGATTTATATACCTGTAAGGAATGTAGATTTAAGACAATTTGGAAGTCTAATCTGCAGAAACATTTGAAACGCCATACATTATATAAACCTAATCACTCTGAAACAAgaAAAAATTCTCGTATAGATCATTTGAAAACTGATGGGGATGAATGTAAGTctaaggaatgtgattacaaatcgTACTTAAAGGAACCTTTTGAACTTTGTACTGatgttgaatataaatgtaaggaatgtgattataaaacagcatggaaacagagtctaatggaacatgtaaaaattcacactggtgatgaatataaTGATGAAaagtataagtgtaaggaatgtgattataaaacatcttGGAAACAGAGTTTGAAAGAACATGACAAAATTCATGCTggcaatgaatataagtgtaacgaatgtgattataaatcacCTTGGAAGCGTAATCTAAAtgtacatttgaaaattcatacagataataaatataagtgtaacgaatgtgactaTCAAACATCGCGAAGACGGAacctaaaggaacatgtgaaaattcatactggcgatgaatataaatgtaagcattgtgattttaaaacactgtggagacagagtctaaaggaacatacgaaaattcatattaatgatgaatataggtgtaatgaatgtaattttaaaacaccatggaaagggagtctaaaggaacatgtgaaaaatCATGcgggtaatgaatataagtgtagggAATGTGCTTATAAAACACCACGAAAACAGAATATAAAGATACATgagaaaattcatactggtgatgaatataggtGTAAGGAATGCTATTTTAAAACACCCTGGAAGcagaatctaaaggaacatatgaagATTCATGCtggtgttgaatataagtgtaatgaatgtgactataaatcaCCACGGAAGCGGAAtctaaaggaacacaagaaAATTCATTCTGatgttgaatataagtgtaaagaatgtggttaTACAACAACACGGAAACAGAATCtgaaggaacatgtgaaaattcatggTGGTgtggaatataagtgtaacgaatgtgactataaaacaccacGGAAACAGAACTTAAAAGAACATGAGAAACTTCATACTggtgctgaatataaatgtaacaaatgtgactataaaacagtcaggaaaaacaatttaaaaagacacaTGAAAAGTCACGAGTGA
Protein Sequence: MDVDSIENCAIKSEVILTETFSFHGKYGDSGSEELKTEPVDYEENDSVEDVAKQQYSCRECNFMTTEEDSLIGHSKITKNVGNSCKECNFTASLECSIKEHLRIHNRINDGYTIEEYSFNAPQLKTLTNDEYICNECNYTTSIKNDLRTHVKIHNIHEYTCEKCDYKTLCKHSLTAHVKIHVGDVHKCKECDYKTLRKIQLKEHVKIHTGDEYKCTECDYKTVWKSNLNKHFKIHAGDIYKCKECDYKTVREQLLKQHVTIHTGDVYKCIQCDYRTVWKNQLKAHVKIHTCDEYKCKECDYKTVWKSNLNKHFKIHTGAEYKCKDCDYRTVWKNRLKEHLKFHMGDEYKCKECDYRTVRKNQLKEHVKIHTGDEYKCKDCDYRTVWKPRLNEHVKIHNGDKYKCKDCDYSTVWKYQLKEHIKIHTGDEYKCKECNYKTVRKNQLKEHVKIHTGDKYKCKDCDYRTVRKRRLNEHEKIHSGDIYKCKECDYKTVWKFSLKSHIKRHTGDLYTCKECRFKTIWKSNLQKHLKRHTLYKPNHSETRKNSRIDHLKTDGDECKSKECDYKSYLKEPFELCTDVEYKCKECDYKTAWKQSLMEHVKIHTGDEYNDEKYKCKECDYKTSWKQSLKEHDKIHAGNEYKCNECDYKSPWKRNLNVHLKIHTDNKYKCNECDYQTSRRRNLKEHVKIHTGDEYKCKHCDFKTLWRQSLKEHTKIHINDEYRCNECNFKTPWKGSLKEHVKNHAGNEYKCRECAYKTPRKQNIKIHEKIHTGDEYRCKECYFKTPWKQNLKEHMKIHAGVEYKCNECDYKSPRKRNLKEHKKIHSDVEYKCKECGYTTTRKQNLKEHVKIHGGVEYKCNECDYKTPRKQNLKEHEKLHTGAEYKCNKCDYKTVRKNNLKRHMKSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -