Lyun019299.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002652.1:330719-333640[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.012 0.16 12.6 0.4 1 22 62 83 62 86 0.91
2 30 1.5 22 5.9 1.8 3 23 143 163 142 163 0.97
3 30 0.24 3.3 8.5 3.5 1 23 168 190 168 190 0.97
4 30 0.0022 0.03 14.9 2.0 1 23 195 217 195 217 0.99
5 30 0.0058 0.082 13.5 6.4 1 23 222 244 222 244 0.99
6 30 0.08 1.1 9.9 1.3 1 23 249 271 249 271 0.98
7 30 0.056 0.79 10.4 1.4 1 23 276 298 276 298 0.98
8 30 0.0013 0.018 15.6 5.7 1 23 303 325 303 325 0.99
9 30 0.025 0.36 11.5 1.3 1 23 330 352 330 352 0.98
10 30 0.046 0.65 10.7 3.9 1 23 357 379 357 379 0.99
11 30 0.011 0.15 12.7 6.7 1 23 384 406 384 406 0.99
12 30 0.025 0.36 11.5 1.3 1 23 411 433 411 433 0.98
13 30 0.0051 0.073 13.7 2.8 1 23 438 460 438 460 0.99
14 30 0.00092 0.013 16.0 5.2 1 23 465 487 465 487 0.99
15 30 0.025 0.36 11.5 1.3 1 23 492 514 492 514 0.98
16 30 0.0045 0.064 13.9 3.9 1 23 519 540 519 540 0.99
17 30 0.01 0.14 12.8 1.5 1 23 545 567 545 567 0.99
18 30 0.12 1.7 9.4 3.5 1 23 572 594 572 594 0.98
19 30 0.0013 0.018 15.6 5.7 1 23 599 621 599 621 0.99
20 30 0.02 0.28 11.8 2.4 1 23 626 648 626 648 0.99
21 30 0.37 5.3 7.8 4.4 1 23 653 675 653 675 0.97
22 30 7.4e-05 0.0011 19.5 3.3 1 23 680 702 680 702 0.98
23 30 0.0049 0.07 13.7 1.6 1 23 707 729 707 729 0.98
24 30 0.0071 0.1 13.2 5.2 2 23 735 756 734 756 0.97
25 30 0.025 0.36 11.5 1.3 1 23 761 783 761 783 0.98
26 30 0.01 0.14 12.8 1.5 1 23 788 810 788 810 0.99
27 30 0.12 1.7 9.4 3.5 1 23 815 837 815 837 0.98
28 30 4.8e-05 0.00067 20.1 3.8 1 23 842 864 842 864 0.99
29 30 0.031 0.44 11.2 0.7 1 23 869 891 869 891 0.98
30 30 4.6 65 4.4 3.6 1 23 896 918 896 918 0.95

Sequence Information

Coding Sequence
atGGACGTTGATTTTAATGAAACTTGCCTGATGAAAACCGAAATTGTACAGGAAACATTTTCATATTGTGGAAATTATGAAGATTATGGGAATGAAGAATTGAAATCGGAGAAGTATTTTAAATGCGAAGAGGAGGATAGTTTTGTGGAGCTAACCGACGTATGTGCTGTACCCGTAcatcaatatatttgtaatgaatgtaattttattacaagaaAGAAAGATTCTTTAATACAACACTTGAACATTATTAAACATGTTCactatttttgcaaaatatgtaattttaaaacccGCTTTGTATGTTCCATAAAAGACCATTTCAGGATTCATAAAGAGGTGGGTTGCAgacatattactaaaaaatgtaatatcaaGACGTCACAAATTTTCTCTTTAGCACTACAAAGTGGGAACAAAGGTATTTGTAagcaatgtgattataaaatacaaaagaaacggagactaaaggaacatttaaaaattcataaaggtgatgaatataagtgtattgaatgtgattataaaacacataggaaacagagtctaaaggaccatttaaaaattcatatgggtgatgaatataagtgtaatgaatgtgattataaaacaacgtgGAAAACGAAcctaaaaaatcatttaaaaattcatactggtgatgaatataagtgtaatgaatgtgattataaaacgcataggaaacatagtctaaaggaacatttaaaaattcatacaagtgatgagtataagtgtaatgaatgtgattataaaacaatgtggAAAACAAGCCTAAaggatcatttaaaaattcatattggtgacaaatataaatgtaatgaatgtgattataaaacacaatggaaacAAAATCTAGAGAATCATTTAAAACTTCAtactaattataaatataaatgtaaggaatgtgattataaaacacatagGAAACGGAATCTAAAgagccatttaaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacacagtggaAATGGAATCTAAAgagccatttaaaaattcatacaggagatgagtataagtgtcatgaatgtaattataaaacaacatggaaaaCGAGCCTAAaggatcatttaaaaattcatactggtgacgaatataaatgtaggaaatgtgattataaaacacatagGAAACGGAATCTAAAgagccatttaaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacacagtggaAATGGAATCTAAAgagccatttaaaaattcatacaggagatgagtataagtgtaataaatgtgattataaaacaacgtggaaaaataacctaaaaaatcatttaaaaattcatactggtgatgaatataagtgtaatgaatgtgattataaaacacatagGAAACGGAATCTAAAgagccatttaaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacacagtggaAATGGAATCTAAAgagccatttaaaaattcatacaggagatgagtataagtgtaataaatgtgattataaaactaggAAACGGAATCTAAAgagtcatttaaaaattcatacaggagatgagtataagtgtaatgaatgtgattataaaacaacgtgGAAAACGAGCCTAAaggatcatttaaaaattcatacaggagatgagtataagtgtaatgaatgtgattataaaacacattggAAACAAAATCTAGAGAAGCATTTAAAACTTCATACTGgttatgaatataaatgtaaggaatgtgattataaaacacatagGAAACGGAATCTAAAgagccatttaaaaattcatactggtgatgaatataagtgtaataaatgtgattataaaacaacgtgGAAAACAAGTCTAAaggatcatttaaaaattcatactggtgatgactataaatgtaatgaatgcgattataaaacacattggAAACAAAATCTAGAgaagcatttaaaatttcatactggttatgaatataaatgtcaggaatgtgattataaaacatataGGAAACGGAATCTAAAGCgacatttaaatattcatactagtgaggaatataagtgtaatgaatgtgattataaaacacagttGAAACAAAATCTAGAGAATCATTTAAAacttcatactggtgatgaatctaaatgtaaggaatgtgattataaaacacatagGAAACGGAATCTAAAgagtcatttaaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacacagtggaAATGGAATCTAAAgagtcatttaaaaattcatacaggagatgagtataagtgtaatgaatgtgattataaaacaacgtgGAAAACGAGCCTAAaggatcatttaaaaattcatactggtgatgactataaatgtaatgaatgcgattataaaacacattggAAACAAAATCTAGAGAAGCATTTAAAACTTCATACTGgttatgaatataaatgtaaggaatgtgattataaaacacgtaGGAAAAGGAATCTAAAgagccatttaaaaattcatactgatgaggaatataagtgtaatgaatgtgattataaaacacagtggaAATGGAATCTAGAgagtcatttaaaaattcatactggtgctgaatataagtgtaatgaatgtgattataaaacacattggAAACAGAGTTTTAAgggtcatttaaaaattcatgcgGGTGATAAATACAAGTGTATggagtgtaattataaaacagtgtggaaaagttgTATAAAAAGACATACAGAAATTCACATGCGGGATAAACATCTTTTAGTCTAA
Protein Sequence
MDVDFNETCLMKTEIVQETFSYCGNYEDYGNEELKSEKYFKCEEEDSFVELTDVCAVPVHQYICNECNFITRKKDSLIQHLNIIKHVHYFCKICNFKTRFVCSIKDHFRIHKEVGCRHITKKCNIKTSQIFSLALQSGNKGICKQCDYKIQKKRRLKEHLKIHKGDEYKCIECDYKTHRKQSLKDHLKIHMGDEYKCNECDYKTTWKTNLKNHLKIHTGDEYKCNECDYKTHRKHSLKEHLKIHTSDEYKCNECDYKTMWKTSLKDHLKIHIGDKYKCNECDYKTQWKQNLENHLKLHTNYKYKCKECDYKTHRKRNLKSHLKIHTGDEYKCNECDYKTQWKWNLKSHLKIHTGDEYKCHECNYKTTWKTSLKDHLKIHTGDEYKCRKCDYKTHRKRNLKSHLKIHTGDEYKCNECDYKTQWKWNLKSHLKIHTGDEYKCNKCDYKTTWKNNLKNHLKIHTGDEYKCNECDYKTHRKRNLKSHLKIHTGDEYKCNECDYKTQWKWNLKSHLKIHTGDEYKCNKCDYKTRKRNLKSHLKIHTGDEYKCNECDYKTTWKTSLKDHLKIHTGDEYKCNECDYKTHWKQNLEKHLKLHTGYEYKCKECDYKTHRKRNLKSHLKIHTGDEYKCNKCDYKTTWKTSLKDHLKIHTGDDYKCNECDYKTHWKQNLEKHLKFHTGYEYKCQECDYKTYRKRNLKRHLNIHTSEEYKCNECDYKTQLKQNLENHLKLHTGDESKCKECDYKTHRKRNLKSHLKIHTGDEYKCNECDYKTQWKWNLKSHLKIHTGDEYKCNECDYKTTWKTSLKDHLKIHTGDDYKCNECDYKTHWKQNLEKHLKLHTGYEYKCKECDYKTRRKRNLKSHLKIHTDEEYKCNECDYKTQWKWNLESHLKIHTGAEYKCNECDYKTHWKQSFKGHLKIHAGDKYKCMECNYKTVWKSCIKRHTEIHMRDKHLLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-