Lyun016605.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002264.1:1087699-1106862[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.7e-05 0.00024 21.5 3.8 1 23 92 114 92 114 0.99
2 19 6.1e-05 0.00086 19.7 1.2 1 23 119 141 119 141 0.99
3 19 0.00014 0.002 18.6 3.1 1 23 146 168 146 168 0.97
4 19 0.034 0.48 11.1 1.3 1 23 173 195 173 195 0.99
5 19 0.0026 0.037 14.6 1.1 1 23 200 222 200 222 0.99
6 19 0.0032 0.046 14.3 0.5 1 23 227 249 227 249 0.99
7 19 0.00014 0.002 18.6 3.1 1 23 254 276 254 276 0.97
8 19 0.034 0.48 11.1 1.3 1 23 281 303 281 303 0.99
9 19 0.0026 0.037 14.6 1.1 1 23 308 330 308 330 0.99
10 19 0.011 0.15 12.7 0.5 1 23 335 357 335 357 0.98
11 19 0.0021 0.03 14.9 2.4 1 23 362 384 362 384 0.98
12 19 0.31 4.4 8.1 4.5 1 23 389 411 389 411 0.99
13 19 0.0013 0.018 15.6 3.5 1 23 416 438 416 438 0.99
14 19 6e-05 0.00085 19.8 1.8 1 23 443 465 443 465 0.98
15 19 0.09 1.3 9.8 4.7 1 23 470 492 470 492 0.99
16 19 0.0013 0.018 15.6 3.5 1 23 497 519 497 519 0.99
17 19 6.5e-05 0.00092 19.6 1.0 1 23 524 546 524 546 0.98
18 19 7.9e-05 0.0011 19.4 1.6 1 23 577 599 577 599 0.98
19 19 0.09 1.3 9.8 4.7 1 23 604 626 604 626 0.99

Sequence Information

Coding Sequence
ATGGATGTGGATTCTGTTGAAATCCGtgaaataaaatctgaagtgattttaacagaaacattttcattCTGTGGAACATACAGAGATCATGATGGTGACAAATTAAAAACGGAGTTTGTAGATGAATCAATTAAATGTAAGGATGAAGATTTCACAAACCACTTGGATCCACATGCTGTTTCCATGCAATCATACTTCTACAATGAAAGTAATCAAATCACAGTAATAAAAAATCGTCTTactagtcaaatgagaattcagacaggtgttgaatataagtgtaaagaatgtgattataaaactgtacggaaaagtcATTTAAAGCAACATATCCagattcatacaggtgataaatataagtgcaaagaatgtgattttaaaactgtacggaaGGGTAATCTATtgcgacatgtcaaaattcatacaggtgacaaatataagtgtaaagattgtaatTATGAGACAACACGGAAAGATCAACTAAAGAAACATGCCACCAaacatacaggtgacgaatataagtgtaaaaagtgtaattataaaacaatatgggaaCGTAATCTACAGGatcatattaaaattcattcaggtgaagaatataagtgtaaagaatgtgattataaaacagtatggacaagtaatctaaagcaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattttagaACTGCAGCAAACATtagtctaaagcaacatatcaaaattcatacaggtgacaaatataagtgtaaagattgcaATTATGAGACAACACGGAAAGATCAACTAAAGAAACATGCCACCAaacatacaggtgacgaatataagtgtaaaaagtgtaattataaaacaatatgggaaCGTAATCTACAGGatcatattaaaattcattcaggtgaagaatataagtgtaaagaatgtgattataaaacagtatggacaagtaatctaaagcaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattttagaACTGCAGCAAACAttagtctaaagcaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattacaaaactgTATTAAAAGGTCATTTAAAGCAACATGCCAAGATTCATACtggtgttgaatataagtgtagaaactgtgactataaaacagtatgggaacatcatctaaaggaacatatgaaaattcatacaggtgatgaatataaatgtaaagaatgtgattttaaaactgtacggaaatgtaatctaatacaacatgtcaaaattcatacaggtgacaaatataagtgtaaagattgcaATTATGAGACCGCACGGAAAGACCAACTAAAAAAGCATGTCAACAATCATACAGGTGTTGATTATAAGTGTAAAAactgcgattataaaacagtatgggaacatcatctaaaggaacatatgaaaattcatacaggtgatgaatataaatgtaaagaatgtgattttaaaactgtacggaaatgtaatctaatacaacatgtcaaaattcatacaggtgacaaatataagtgtaaagattgcaATTATGAGACAGCACAGAAAGACCAACTAAAGGACCATATTAACaatcatacaggtgatgaatataagtgtaaagaacgTGATTTTAGAACAGAATCGAACATTAGTCTGCAGCaacttcaaaattcatacagtgacaaatataagtgtaaagattgcaATTATGAGACAGCACAGAAAGACCAACTAAAGAAGCATGTCAACAATCATataggtgacaaatataagtgtaaaaactgcgattataaaacagtatgggaacatcatctaaaggaacatatgaaaattcatacaggtgatgaatataagtgtaaagaacgTGATTTTAGAACAGAATCGAACATTAGTCTGCAGcaacgtcaaaattcatacagAAAGTTGCAGTTTAGTGATGGAGTTACATCCTTAGAATGTTCTAAGATTATATTGGAGCAAGAACCTTGTTCACCAATAATAGATGTGATTGCAAAAGAATCACTATCATCTGAATTATCTCCGAAACAACCTAAACCGAAGATATGA
Protein Sequence
MDVDSVEIREIKSEVILTETFSFCGTYRDHDGDKLKTEFVDESIKCKDEDFTNHLDPHAVSMQSYFYNESNQITVIKNRLTSQMRIQTGVEYKCKECDYKTVRKSHLKQHIQIHTGDKYKCKECDFKTVRKGNLLRHVKIHTGDKYKCKDCNYETTRKDQLKKHATKHTGDEYKCKKCNYKTIWERNLQDHIKIHSGEEYKCKECDYKTVWTSNLKQHIKIHTGDEYKCKECDFRTAANISLKQHIKIHTGDKYKCKDCNYETTRKDQLKKHATKHTGDEYKCKKCNYKTIWERNLQDHIKIHSGEEYKCKECDYKTVWTSNLKQHIKIHTGDEYKCKECDFRTAANISLKQHVKIHTGDEYKCKECDYKTVLKGHLKQHAKIHTGVEYKCRNCDYKTVWEHHLKEHMKIHTGDEYKCKECDFKTVRKCNLIQHVKIHTGDKYKCKDCNYETARKDQLKKHVNNHTGVDYKCKNCDYKTVWEHHLKEHMKIHTGDEYKCKECDFKTVRKCNLIQHVKIHTGDKYKCKDCNYETAQKDQLKDHINNHTGDEYKCKERDFRTESNISLQQLQNSYSDKYKCKDCNYETAQKDQLKKHVNNHIGDKYKCKNCDYKTVWEHHLKEHMKIHTGDEYKCKERDFRTESNISLQQRQNSYRKLQFSDGVTSLECSKIILEQEPCSPIIDVIAKESLSSELSPKQPKPKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-