Lyun015745.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002186.1:255648-257948[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.056 0.79 10.4 0.2 1 20 61 80 61 82 0.94
2 23 0.0046 0.065 13.8 0.9 1 23 137 159 137 159 0.98
3 23 0.23 3.3 8.5 0.7 1 23 164 186 164 186 0.97
4 23 7.5e-05 0.0011 19.5 2.5 1 23 191 213 191 213 0.99
5 23 0.0081 0.12 13.1 0.8 1 23 218 240 218 240 0.98
6 23 0.0071 0.1 13.2 1.0 1 23 245 267 245 267 0.99
7 23 0.031 0.43 11.2 0.4 1 23 272 294 272 294 0.99
8 23 4.3e-05 0.00061 20.2 1.8 1 23 299 321 299 321 0.99
9 23 0.087 1.2 9.8 0.7 1 23 326 348 326 348 0.98
10 23 0.0093 0.13 12.9 0.7 1 23 353 375 353 375 0.98
11 23 0.057 0.8 10.4 2.0 1 23 380 402 380 402 0.98
12 23 0.00086 0.012 16.1 3.1 1 23 407 429 407 429 0.98
13 23 0.0054 0.077 13.6 1.9 1 23 434 456 434 456 0.99
14 23 0.0034 0.048 14.2 1.1 1 23 461 483 461 483 0.98
15 23 1.6 23 5.8 6.4 1 23 488 510 488 510 0.98
16 23 0.00022 0.0031 18.0 0.7 1 23 515 537 515 537 0.99
17 23 4.3e-05 0.00061 20.2 1.8 1 23 542 564 542 564 0.99
18 23 0.092 1.3 9.7 0.5 1 23 569 591 569 591 0.97
19 23 1.4e-05 0.0002 21.8 0.8 1 23 596 618 596 618 0.99
20 23 0.057 0.8 10.4 2.0 1 23 623 645 623 645 0.98
21 23 0.00086 0.012 16.1 3.1 1 23 650 672 650 672 0.98
22 23 0.0054 0.077 13.6 1.9 1 23 677 699 677 699 0.99
23 23 0.0034 0.048 14.2 1.1 1 23 704 726 704 726 0.98

Sequence Information

Coding Sequence
atggaCGTTCATATGGTTGAAAGTTCtgaaataaaatctgaagtaaTTCTAACAGAAACATTCGAAGATTATGTGGGTCAAGAATTGAAAACAGAAccagaaggttttgaagaatcATTGAAAAGTAAGGAGTGCAATCCTGCAGAGGACTTGGTTGCACATGCTGGTTCAGCACAACATTATTATTGTaacgaatgtaattttacaacgGTGGAAAGAGATTCTCTAACAGAACATTTGACAATTACTAGTagtgttcaatatttttgtgagATATGTAACTTTAAAACGCAGCTAGAATGTTCTAAAAACGAGCATTTGAAATTTCACAACCtagtaaatgataaaaatatcgaagagtgtaattttaaaacaccaCATCTCAAAACTCCAAAAAGTGTCAATGAATATatatgtaatgaatgtaattataccacatatataaaaaattccCTAAGGAGACATGTAAACAttcatatacaaaataaatatacatgtaaagaatgtgattataaaacggtttgGAAAGATAGTATaaagcaacatgttaaaattcatacgggtgatgaatataagtgtaaagagtgtgattataaaacagtgcggaaatatcttctaaagcaacatttaaaaattcatatgggtgaccaatataagtgtgaagaatgtgattatacaaCAGTATGGAAAGGTCACCTAagggaacatgtgaaaattcatactggcgatgaatataagtgcaaagaatgtgattataaaacagtgtggaaagatcttctaaagcaacatttaaaaattcatacgggtgaccaatataagtgtcaagaatgtgattataaaacagtatggaaaggtcttttaaaagaacatgtcaaTACTCATATAGGtggtgaatataagtgtaaagaatgtgattataaaacagtacggaaagatcttctaaagcaacatttaaaaattcatacaagtgacgaatataaatgtaaagaatgtgattataaaacagcatggaaaagTCGTCTaatggaacatgtcaaaattcatacaggtgatgaatataagtgcaaagaatgtgattataaaacagtatggaaaggtaatctaaacgaacataccaaaattcatgcaggtggtgagcataagtgtaaagaatgtgattataaaacagtgtggaaaggtcttctaaagcaacatttaaaaattcatatgggtgataaatatatgtgtaatgaatgtgactataaaacagttcggaaaaattgtttaatgaaacatatcaaaattcacacaggcgatgaatataaatgtaaagaatgtgattacaaaacagtgcagaaatatattctaaagcaacatttaaaaattcatacgggtgatcAATATaggtgtgaagaatgtgattataaaacagtacggaaaactcgtctaaaggaacatgccaaaattcatgcaggcgatgaatataagtgtaaagaatgtcatTACAAAACAATGTGGAAACATCttctaaagcaacatttaaaaattcatacagatgatgaatataagtgtaaagaatgtggttataaaacagtgcgggaAAGTCGTCTAatggaacatatcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtacggaaagatcttctaaagcaacatttaaaaattcatacaggggatgaatataaatgtaaagaatgtgattataaaacagtgtggaaaaatcttctaatggaacatgtcaaaattcatacaggtgatgaatataagtgcaaagaatgtgattataaaacagtaaggaATGGTAATCTAAaagaacatatcaaaattcatgcaggtggtgagcataagtgtaaagaatgtgattataaaacagtgtggaaaggtcttctaaagcaacatttaaaaattcatatgggtgataaatatatgtgtaatgaatgtgactataaaacagttcggaaaaattgtttaatgaaacatatcaaaattcacacaggcgatgaatataaatgtaaagaatgtgattacaaaacagtgcagaaatatattctaaagcaacatttaaaaattcatacgggtgatcAATATaggtgtgaagaatgtgattataaaacagtacggaaaactcgtctaaaggaacatgccaaaattcatgcaggcgatgaatataagtgtaaagaatgtcatTACAAAACAATGTGGAAACATCTTCTaaagcaacattaa
Protein Sequence
MDVHMVESSEIKSEVILTETFEDYVGQELKTEPEGFEESLKSKECNPAEDLVAHAGSAQHYYCNECNFTTVERDSLTEHLTITSSVQYFCEICNFKTQLECSKNEHLKFHNLVNDKNIEECNFKTPHLKTPKSVNEYICNECNYTTYIKNSLRRHVNIHIQNKYTCKECDYKTVWKDSIKQHVKIHTGDEYKCKECDYKTVRKYLLKQHLKIHMGDQYKCEECDYTTVWKGHLREHVKIHTGDEYKCKECDYKTVWKDLLKQHLKIHTGDQYKCQECDYKTVWKGLLKEHVNTHIGGEYKCKECDYKTVRKDLLKQHLKIHTSDEYKCKECDYKTAWKSRLMEHVKIHTGDEYKCKECDYKTVWKGNLNEHTKIHAGGEHKCKECDYKTVWKGLLKQHLKIHMGDKYMCNECDYKTVRKNCLMKHIKIHTGDEYKCKECDYKTVQKYILKQHLKIHTGDQYRCEECDYKTVRKTRLKEHAKIHAGDEYKCKECHYKTMWKHLLKQHLKIHTDDEYKCKECGYKTVRESRLMEHIKIHTGDEYKCKECDYKTVRKDLLKQHLKIHTGDEYKCKECDYKTVWKNLLMEHVKIHTGDEYKCKECDYKTVRNGNLKEHIKIHAGGEHKCKECDYKTVWKGLLKQHLKIHMGDKYMCNECDYKTVRKNCLMKHIKIHTGDEYKCKECDYKTVQKYILKQHLKIHTGDQYRCEECDYKTVRKTRLKEHAKIHAGDEYKCKECHYKTMWKHLLKQH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-