Lyun007073.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:2139480-2141639[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.36 5.1 7.9 0.0 1 21 65 85 65 86 0.95
2 18 0.0038 0.054 14.1 1.7 1 23 149 171 149 171 0.98
3 18 0.001 0.015 15.9 4.0 1 23 176 198 176 198 0.99
4 18 6.2e-05 0.00088 19.7 2.7 1 23 203 225 203 225 0.99
5 18 1.4 20 6.0 0.1 9 23 231 245 226 245 0.85
6 18 0.026 0.37 11.5 2.5 1 23 250 272 250 272 0.99
7 18 0.94 13 6.6 3.2 1 23 277 299 277 299 0.98
8 18 0.00018 0.0025 18.3 0.7 1 23 304 326 304 326 0.99
9 18 5e-05 0.00071 20.0 0.5 1 23 331 353 331 353 0.99
10 18 6e-05 0.00084 19.8 1.5 1 23 358 380 358 380 0.99
11 18 0.0079 0.11 13.1 1.3 1 23 385 407 385 407 0.99
12 18 0.00015 0.0022 18.5 0.4 1 23 412 434 412 434 0.98
13 18 6.9e-05 0.00097 19.6 1.4 1 23 439 461 439 461 0.99
14 18 2.5e-05 0.00035 21.0 1.7 1 23 466 488 466 488 0.99
15 18 0.001 0.014 15.9 0.5 1 23 494 516 494 516 0.99
16 18 7.4e-05 0.0011 19.5 1.5 1 23 521 543 521 543 0.99
17 18 0.00013 0.0019 18.7 1.1 1 23 548 570 548 570 0.99
18 18 0.0011 0.015 15.8 3.1 1 23 576 598 576 598 0.99

Sequence Information

Coding Sequence
ATGGACGCCGAATATAGTGAAAGTTACccaataaaatcagaagtgattgTACATGAAACATATTGTGGACAATATGGAGTTTATGGgaatgaagaattgaaaatgGAACCAGCAGATTtggaagaatcttttaaatgcaaaaaagaAGCTAATCTTGAAGAGCACCCATCCGAAAGTATAACCGCGCATCAATATATATGTAACGAATGTAATTCTATTGCAACAGAGAAAGAGTCTTTAAtagaacatatgaaaattactaagaatgttcaatatttttgtatggaatgtaattttacaaccCTGTTAGAATGTTCTATAAAGCAGCATTTCAGGATTCATAGCAGGGTTGGTTGTAAACATATCACTAAACAACATAACTCTAAGacatcacaaattttttctttagcaCCACATTTGAAAACTCCAAAAGGTGATGATAAGTATATAtgtaagaaatgtgattataaaacaccgcAGAAATGGAGTATGAAGAAACATGCAAGAAATCATACTGGTGTtcaatataagtgcaaagaatgcgATTATGAAACAATACGGAAACATAGTTTTAcacaacatttgaaaattcatactagtgttgaatataagtgtaacaagtgtaattataaaacagttcgGAAAGATACTCTCAggcaacacatcaaaattcatacctgtgataaatataagtCGGTACGGAAAGAGAATCTAATacaacacatcaaaattcatacctgtgataaatataagtgtaaggagtgtgattttaaaacaatatggaaacataATCTAATTCAAcacttaaaaattcatactggtgatgaatataagtgtaaggcgtgtgattataaaacaatatggaaacataGTTTTacacaacacataaaaattcatactggcgatgaatataagtgtaacgattgtaattataaaacagtacggaaagATGTTCTAATCcaacacataaaaattcatactggtgaggaatataagtgtaatgagtgtaattataaaGCGGTACGTAAAGAGAATCTAATacaacacatcaaaattcatactggtgataaatataagtgtactgagtgtaattataaaacagtacggaaagATACATTAATGcaacacataaaaattcatactggtgacgaatataagtgtaaggagtgtgattataaaacaatatggaaacgtAGTCTTacacaacatataaaaattcatactggtgatgaatataggtgtaacgagtgtaattataaaacagtacggaaagGTGCGCTAATCCAACACTTAAACATTCATACTGgtcatgaatataagtgtaatgaatgtaattataaaacagtacggaaagAAACTCTAAtgcaacacatcaaaattcatactggtgatgaatataagtgtaacgagtgtaattataaaacagtacggaaagATACTTTAAtgaaacacataaaaattcatgctggtgataaaaaatataagtgtaaggaatgtgattataaaacaatatggaaatatAATCTAATAATACACAtaagaattcatactggtgatgaatataagtgtaccgagtgtaattataaaacaatacggaAAGATACTCTGAtgcaacatataaaaattcatactggtgatgaatataagtgtactgAGTGTagttataaaacagtacggaaagATACTTTAATTcaacacataaaaattcatactggtgataaaaaatataagtgtaaggaatgtgattataaaacaatatggaaacataatctaacaaaacacataagaattcatactggtgatgaatacaagtgtaaggaaTTTGACGTTAAGACTGTagaaaggtaa
Protein Sequence
MDAEYSESYPIKSEVIVHETYCGQYGVYGNEELKMEPADLEESFKCKKEANLEEHPSESITAHQYICNECNSIATEKESLIEHMKITKNVQYFCMECNFTTLLECSIKQHFRIHSRVGCKHITKQHNSKTSQIFSLAPHLKTPKGDDKYICKKCDYKTPQKWSMKKHARNHTGVQYKCKECDYETIRKHSFTQHLKIHTSVEYKCNKCNYKTVRKDTLRQHIKIHTCDKYKSVRKENLIQHIKIHTCDKYKCKECDFKTIWKHNLIQHLKIHTGDEYKCKACDYKTIWKHSFTQHIKIHTGDEYKCNDCNYKTVRKDVLIQHIKIHTGEEYKCNECNYKAVRKENLIQHIKIHTGDKYKCTECNYKTVRKDTLMQHIKIHTGDEYKCKECDYKTIWKRSLTQHIKIHTGDEYRCNECNYKTVRKGALIQHLNIHTGHEYKCNECNYKTVRKETLMQHIKIHTGDEYKCNECNYKTVRKDTLMKHIKIHAGDKKYKCKECDYKTIWKYNLIIHIRIHTGDEYKCTECNYKTIRKDTLMQHIKIHTGDEYKCTECSYKTVRKDTLIQHIKIHTGDKKYKCKECDYKTIWKHNLTKHIRIHTGDEYKCKEFDVKTVER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-