Lyun000430.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000047.1:1624576-1626794[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.24 3.4 8.4 3.3 1 21 64 84 64 85 0.95
2 21 0.038 0.53 11.0 2.5 1 23 143 165 143 165 0.97
3 21 0.00088 0.012 16.1 1.5 1 23 170 192 170 192 0.99
4 21 7.5e-05 0.0011 19.5 2.1 2 23 198 219 197 219 0.97
5 21 1.5e-05 0.00022 21.6 1.8 1 23 224 246 224 246 0.99
6 21 4.1e-05 0.00058 20.3 0.7 2 23 252 273 251 273 0.96
7 21 0.017 0.24 12.1 4.2 1 23 278 300 278 300 0.99
8 21 0.013 0.19 12.4 0.7 3 23 307 327 305 327 0.94
9 21 0.0016 0.023 15.3 1.4 1 23 332 354 332 354 0.98
10 21 5.1e-05 0.00072 20.0 0.9 1 23 359 381 359 381 0.99
11 21 0.00014 0.002 18.6 1.0 2 23 387 408 386 408 0.96
12 21 0.0081 0.11 13.1 2.2 1 23 413 435 413 435 0.99
13 21 0.016 0.22 12.2 2.6 2 23 441 462 440 462 0.97
14 21 0.00032 0.0045 17.5 2.5 2 23 467 488 466 488 0.97
15 21 0.0049 0.069 13.7 0.9 2 23 494 515 493 515 0.97
16 21 0.00081 0.012 16.2 1.6 2 23 521 542 520 542 0.97
17 21 0.057 0.81 10.4 2.5 2 23 548 569 547 569 0.95
18 21 0.0016 0.022 15.3 2.1 2 23 575 596 574 596 0.97
19 21 0.013 0.18 12.4 5.3 1 23 601 623 601 623 0.99
20 21 0.00014 0.002 18.6 0.6 2 23 636 657 635 657 0.97
21 21 0.002 0.028 15.0 0.9 2 22 663 683 662 683 0.95

Sequence Information

Coding Sequence
ATGGATGTCGATTGCAATAAACGGGGtccaataaaatctgaagtgactctaaaagaaacattttctttttgcggAGAATTTAGAGattatggaaataaagaattgaaatctGAGCCAGTAGATAtcgaagaatcttttaaatgcaaGGAAGAAGAGCATATAATTATATCTGCTGATCCCGTACAGCAATATACTTGTAACGattgtaactttaaaacaaCGGAAAGGAATTGTCTACTAAAACATCTGAAAAGTACTAAAAACTTTGAACAtttgtgtaaaaaatgtaactttaaaactcTATTCCAATGTTTCATGAatgatcatttaaaaattcatcatGGAGTAGatagtaaatgtaattttaagacatCTCAAATTATCTGTGTAACACAACAATTGAAAACTGCCAAAAGTGATGATTACTATATTTGTAATCAATGTggctttaaaacaaaattgaaaggtAAACTAAAAGTACATATACATAATCATATAGGTAACaagtataagtgtaaggaatgtgattttaaaacggtGTGGAAATCTAATCTTAACACGCATATGaaaatccatacaggtgataaattgaagtgtaaagaatgcgactACAAAACTTctagaaaatctaaattaaaagaacatatgAGCATTCATACAGGTGTTCaatttaagtgtaaagagtgtgactataaaacacctaGGAAATATAATTTAGACcaacatatgagaattcatacaggtgatttACTAAattgtaaggaatgtgactacaaaactcctaGAAAAGGAGATCTTAAcagacatatgaaaattcatacaggtgatgaatttaaatgtaaagaatgtgactataaatctGCGTGGAAATGTAATCTTAACACACATATGAAAACTCATACAGGTGAAAAAATgaactgtaaagaatgtgacttcAAAACTCTTAGAAAATATGATCTTGAGGCACATATGaaaatccatacaggtgatgaatttaagtgtgaagaatgtgactataaaacacctaagaaatacaaattaaaagaacatcTGAgcattcatacaggtgatgaatttaagtgtaaaggatgtgattataaaacacctaGAAAATATGACTTAGAtgaacatatgagaattcatacaggtgatgtaTTGaactgtaaggaatgtgactacaaaactcctaGAAAACGAGATCTTAACAGACATATAAAGATTCATGCCGGTgatgaatttaaatgtaaagaatgtgactataaatctgcgtggaaatataattttaacacacatatgaaaattcataccagTGATAAATTgcagtgtaaagaatgtgattacaaaactcatatggaatataaattaaaagaacatatgagaattcatacagatgaattgaagtgtaaattatgtgactacaaaactgcTAGGAAATATAGATTAAAAGAACATATGAGAACTCACACGGGTGATGAActgaagtgtaaagaatgtgactataaatctGCGTGGAAATATAATCTTAacacacatatgaaaattcataccagTGATAAATTgcagtgtaaagaatgtgactacaaaacttcTATGAAATATAGATTAAAagaacatatgagaattcacacaggtgatgaattgaagTGTGAATTTTGTGGCTTCAAAACTCTTACAAAATATAGATTAAAAGAACATATGAGAactcacacaggtgatgaactgaagtgtaaagagtgtgattacaaaactcaaagcaaatttaaattaaacgaacatatgagaattcatgcAGGTGctgaatttaagtgtaaagaatgtgactataaatgTGTGTGGAAATATAAACTCAACACACATATGAAAACTCATACAGAACATATGAGAactcacacaggtgatgaactgaagtgtaaagaatgtgactataaaacacctaGAAAATATGACTTAGAtgaacatatgagaattcatacaggtgatgaattgaagtgtaaagaatgtgactacaaaacttctatgaaatataaattaaaagaacatatgAGAATTTGTACAGAtgaattaaagtgtaaattatatGACTACAAAACTGCTAGGAAATATTGA
Protein Sequence
MDVDCNKRGPIKSEVTLKETFSFCGEFRDYGNKELKSEPVDIEESFKCKEEEHIIISADPVQQYTCNDCNFKTTERNCLLKHLKSTKNFEHLCKKCNFKTLFQCFMNDHLKIHHGVDSKCNFKTSQIICVTQQLKTAKSDDYYICNQCGFKTKLKGKLKVHIHNHIGNKYKCKECDFKTVWKSNLNTHMKIHTGDKLKCKECDYKTSRKSKLKEHMSIHTGVQFKCKECDYKTPRKYNLDQHMRIHTGDLLNCKECDYKTPRKGDLNRHMKIHTGDEFKCKECDYKSAWKCNLNTHMKTHTGEKMNCKECDFKTLRKYDLEAHMKIHTGDEFKCEECDYKTPKKYKLKEHLSIHTGDEFKCKGCDYKTPRKYDLDEHMRIHTGDVLNCKECDYKTPRKRDLNRHIKIHAGDEFKCKECDYKSAWKYNFNTHMKIHTSDKLQCKECDYKTHMEYKLKEHMRIHTDELKCKLCDYKTARKYRLKEHMRTHTGDELKCKECDYKSAWKYNLNTHMKIHTSDKLQCKECDYKTSMKYRLKEHMRIHTGDELKCEFCGFKTLTKYRLKEHMRTHTGDELKCKECDYKTQSKFKLNEHMRIHAGAEFKCKECDYKCVWKYKLNTHMKTHTEHMRTHTGDELKCKECDYKTPRKYDLDEHMRIHTGDELKCKECDYKTSMKYKLKEHMRICTDELKCKLYDYKTARKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-