Lyun000031.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:408831-410879[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 3.5 50 4.8 0.7 1 23 93 115 93 115 0.95
2 19 0.0087 0.12 13.0 1.7 1 23 143 165 143 165 0.98
3 19 0.0016 0.023 15.3 0.8 1 23 172 194 172 194 0.99
4 19 0.53 7.5 7.3 2.4 1 23 199 221 199 221 0.96
5 19 0.0041 0.058 14.0 0.5 1 23 226 248 226 248 0.99
6 19 0.00031 0.0043 17.5 0.8 1 23 253 275 253 275 0.98
7 19 5.1e-05 0.00073 20.0 0.4 1 23 280 302 280 302 0.99
8 19 0.0083 0.12 13.0 0.8 1 23 307 329 307 329 0.98
9 19 0.0032 0.045 14.3 0.4 1 23 334 356 334 356 0.99
10 19 0.00011 0.0015 19.0 1.3 1 23 361 383 361 383 0.99
11 19 7.2e-05 0.001 19.5 2.0 1 23 388 410 388 410 0.99
12 19 0.0043 0.061 13.9 0.4 1 23 415 437 415 437 0.99
13 19 0.0011 0.016 15.8 0.7 1 23 442 464 442 464 0.99
14 19 0.0034 0.048 14.3 0.6 1 23 469 491 469 491 0.99
15 19 6.7e-05 0.00095 19.6 2.0 1 23 496 518 496 518 0.99
16 19 0.0012 0.017 15.6 1.5 1 23 523 545 523 545 0.99
17 19 7.9e-06 0.00011 22.5 1.0 1 23 550 572 550 572 0.98
18 19 0.00053 0.0075 16.8 2.4 1 23 577 599 577 599 0.98
19 19 0.24 3.4 8.4 3.8 1 23 631 653 631 653 0.97

Sequence Information

Coding Sequence
ATGGATGTTGTTTCAACagcaaattttacaataaaatccGAAGTGATTTTAAACGAAACATTTGCGTTTTctggaaaatatgaagattgtggTGAGAGTCAAGAACCAAAAACGGAACCAGCAGTTTATGAcgatttgtttaaatgcaaagaAGAAGATTCTGTAGAGGACACAGACATACACGCTGCTTCGATGCAATGCATTAATGAAAGTAATTTTGCAACAATGGAAAAGGATTATCAGttagaacatttgaaaattattaaaaatgttcaatatttttgtaaggaatgtaacttcATATCACAGTTAGAATCTTCCATAAAagagcatttaaaaattcataatggaGTAGATAGACAATATATTACTgaacaatgtaattttaagatgcCAGAGCCGAAACCTGCAAGAATTCGcaacaaatatatttgtaatgaatgtacaTATACGACAttcgtcaaaaattatctaaagaaacatttacaaattcataAAGGTGATGACGacaaatacaagtgtaaagaatgtaattataaaacagtgtggaaaagtagtctaaatgcacacatcaaaattcatacaggtgatgaatacaagtgtaaagaatgtgattataaaacattgtggaaaaaacaactaaatgcacacatcaaaattcatacaggcgatgaatataagtgtacagaatgtgattataaaacagtgtggaaaaatcaattaaatgcacatatcaaaattcatacaggtaatgaatataagtgtgaaggatgtgattataaaacagtgcgcaaaaatgaattaaatgcgcacttcaaaattcatacagataatgaatataagtgtgaaggatgtgaatataaaacagtGCGCAAATATGAACTAAAcgcacacatcaaaattcattcaggtgatgaatacaagtgtaaagaatgtgattataaaacagtgtggaaaaaacaactaaatgcacatgtaaaaattcattcaggtgacgaatataagtgtaatgaatgtgattataaaacagtatggaaaaatcaactaaatgcacacatcaaaattcatacaggtaatgaatataagtgtaaacgatgtgattataaaacagtgcgcaaaaatgaactaaatgcacacatcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaactgtgaggaaatatcaactaaaggaacatgtcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatgaactaaatgcacacatcaaaattcatacaggagatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaaacaactaaatgcacacatcagaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaatgcacacatcaaaattcatacagatgatgaatacaagtgtaaagaatgtgattataaaactgtaaggaaatatcaactaaaagaacatgtcaaagTTCATAcgggtaatgaatataagtgtaaagaatgtgaatataaaacagtgtggaaaagtaacctcaaggaacacatcaaaactcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaaagtaatttaaaggaaCACATtgaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacattgcagCAAAGTTATCTAAAGCgacacattaaaattcatacacgtaatgaatgtaagtgtaaagaatgtgattataaaactgtgtggaaatgtaaactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaataTTGTCTAAAGAGACATGTTGAAAATCATAcagtgattataaaacaccaaaaATGTTTTGACTAA
Protein Sequence
MDVVSTANFTIKSEVILNETFAFSGKYEDCGESQEPKTEPAVYDDLFKCKEEDSVEDTDIHAASMQCINESNFATMEKDYQLEHLKIIKNVQYFCKECNFISQLESSIKEHLKIHNGVDRQYITEQCNFKMPEPKPARIRNKYICNECTYTTFVKNYLKKHLQIHKGDDDKYKCKECNYKTVWKSSLNAHIKIHTGDEYKCKECDYKTLWKKQLNAHIKIHTGDEYKCTECDYKTVWKNQLNAHIKIHTGNEYKCEGCDYKTVRKNELNAHFKIHTDNEYKCEGCEYKTVRKYELNAHIKIHSGDEYKCKECDYKTVWKKQLNAHVKIHSGDEYKCNECDYKTVWKNQLNAHIKIHTGNEYKCKRCDYKTVRKNELNAHIKIHTGNEYKCKECDYKTVRKYQLKEHVKIHTGNEYKCKECDYKTVWKNELNAHIKIHTGDEYKCKECDYKTVWKKQLNAHIRIHTGDEYKCKECDYKTVWKNQLNAHIKIHTDDEYKCKECDYKTVRKYQLKEHVKVHTGNEYKCKECEYKTVWKSNLKEHIKTHTGDEYKCKECDYKTVRKSNLKEHIEIHTGDEYKCKECDYKTLQQSYLKRHIKIHTRNECKCKECDYKTVWKCKLKEHVKIHTGDEYKCKECDYKTVWKYCLKRHVENHTVIIKHQKCFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-