Lyun007382.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:11297063-11298913[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3.3 47 4.8 1.4 1 23 97 119 97 119 0.96
2 18 0.14 1.9 9.2 1.6 1 23 140 162 140 162 0.98
3 18 0.057 0.81 10.4 0.9 1 23 167 189 167 189 0.98
4 18 0.0088 0.12 12.9 2.3 1 23 194 216 194 216 0.98
5 18 0.013 0.19 12.4 3.1 1 23 221 243 221 243 0.99
6 18 1.3e-05 0.00019 21.8 1.2 1 23 248 270 248 270 0.98
7 18 0.0012 0.017 15.6 3.3 1 23 275 297 275 297 0.99
8 18 0.0019 0.026 15.1 0.9 1 23 302 324 302 324 0.98
9 18 2e-05 0.00029 21.2 1.4 1 23 329 351 329 351 0.99
10 18 1e-05 0.00014 22.2 2.9 1 23 356 378 356 378 0.98
11 18 2.7e-05 0.00038 20.9 1.2 1 23 383 405 383 405 0.99
12 18 0.018 0.25 12.0 1.8 1 23 410 432 410 432 0.98
13 18 2.5e-05 0.00035 21.0 0.5 1 23 437 459 437 459 0.98
14 18 1.3e-05 0.00019 21.8 1.2 1 23 464 486 464 486 0.98
15 18 0.0049 0.07 13.7 3.8 1 23 491 513 491 513 0.98
16 18 0.01 0.14 12.7 0.5 1 23 518 540 518 540 0.98
17 18 6.3e-05 0.0009 19.7 2.1 1 23 545 567 545 567 0.98
18 18 0.001 0.014 15.9 0.8 1 23 572 594 572 594 0.98

Sequence Information

Coding Sequence
ATGGATATTGATTCGGTAGattttattgaaagttgtgctataaaatcagaagtgattttaacagagacattttctttttgtgggaagTACGAAGATTGTGGGATTAAGAAGGTGAAACCGGAGCCAGTAGATTACGAAGAATCGTTTAAatctaaagaagaaaatgatcttTCAGAACCCACAGATACATACGCTGCTCCGATGCAACGAGATATTTGTAATGACTCTAATTTTATAACTGGAGAAAATTCTCTAATAGAAGCTGTGAAAGTTACTAAAAGCGTTAAATACTCTTGTAACGAATGTAGCTTTACAACCCCATTAGAATGTTCTATAAACGAGCATACGAGGATTCACAATGATGGATATAAGCCAGAGATTTTCTCTCTATCACCACAGTTGAAAAGTGGGAATGAAtatgtttgtaatgaatgtaattacactacgtTGAATGAAAATTATCGAAAGAGGCATATGAAGATTCACAAAAGTACTGCATATAGTTGtgagaaatgtgattacaatACACGGTGGAAAAGTTCCTTCACAGCACATGCAAAAATTCATTcgggtaatgaatataagtgtaaagtatgtgattacaaaacagtatggaaaagtcatctaaaggaacatgtcaaaattcatagtggtgatgaatataagtgtaaagaatgtgtcTATAAAACGGTACGGAAGTgtgatctaatgcaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtacggaaaagtaatctaaagcaacatgtcattATTCATAAAGGtggtgaatataagtgtaaagaatgtgattataaaacaatacggaaatgtgatctaatgcaacatgtaaaaattcatacagacgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtacggAAAAGTGAACTAAcgcaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaaaagtaatctaaagcatCATATCATaattcatacaggtgttgaatataagtgtaaagaatgtgattataaaactgtacggaaaagtgatctaatgcaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacaatatggaaaggtcatctaaaggaacatgtcaaaattcatactggtgatgaatatatgtgtgaagaatgtgattataaaacggtacggaaaagtgatctaatgcaacatattaaaattcatacgggtgacgaatacaagtgtaaagaatgtgattataaaactgtacggaaaagtaatctaaagcaacatgtcataattcatacaggtgatgaatattattgtaaagaatgcgattataaaacggtgcggaaaaattgtctaaaggaacatgtcaaaattcatagtggtaatgaatataagtgtaaagaatgtgattataaaacggtatggaaaagcGATCTAATgctacatgtcaaaattcatacaggtgatgaatataggtGCACAGAATGTAGTTATAAAACGgtacggaaaagtaatctaaagcaacatgtcaaaattcatactgatgacaaatataagtgtagggaatgtgattataaaacagcaaggATGGATAgtttaaagcaacatgtcaatatTCATACAGctaattaa
Protein Sequence
MDIDSVDFIESCAIKSEVILTETFSFCGKYEDCGIKKVKPEPVDYEESFKSKEENDLSEPTDTYAAPMQRDICNDSNFITGENSLIEAVKVTKSVKYSCNECSFTTPLECSINEHTRIHNDGYKPEIFSLSPQLKSGNEYVCNECNYTTLNENYRKRHMKIHKSTAYSCEKCDYNTRWKSSFTAHAKIHSGNEYKCKVCDYKTVWKSHLKEHVKIHSGDEYKCKECVYKTVRKCDLMQHVKIHTGDEYKCKECDYKTVRKSNLKQHVIIHKGGEYKCKECDYKTIRKCDLMQHVKIHTDDEYKCKECDYKTVWKSNLKEHVKIHTGDEYKCKECDYKTVRKSELTQHVKIHTGDEYKCKECDYKTVRKSNLKHHIIIHTGVEYKCKECDYKTVRKSDLMQHVKIHTGDEYKCKECDYKTIWKGHLKEHVKIHTGDEYMCEECDYKTVRKSDLMQHIKIHTGDEYKCKECDYKTVRKSNLKQHVIIHTGDEYYCKECDYKTVRKNCLKEHVKIHSGNEYKCKECDYKTVWKSDLMLHVKIHTGDEYRCTECSYKTVRKSNLKQHVKIHTDDKYKCRECDYKTARMDSLKQHVNIHTAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-