Lyun007444.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
pold2
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:12938073-12944637[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.035 0.49 11.1 0.9 1 23 62 84 62 84 0.98
2 21 0.0022 0.031 14.9 1.9 1 23 89 111 89 111 0.98
3 21 0.2 2.8 8.7 3.1 1 23 143 165 143 165 0.98
4 21 0.00014 0.002 18.6 1.7 1 23 170 192 170 192 0.99
5 21 0.29 4.1 8.2 2.3 1 23 197 219 197 219 0.98
6 21 0.0027 0.039 14.5 2.8 1 23 224 246 224 246 0.99
7 21 0.023 0.33 11.6 2.3 1 23 251 273 251 273 0.99
8 21 9.1e-05 0.0013 19.2 1.3 1 23 278 300 278 300 0.99
9 21 0.038 0.54 10.9 0.6 1 23 305 327 305 327 0.98
10 21 2.4e-05 0.00034 21.0 1.3 1 23 332 354 332 354 0.99
11 21 0.0063 0.089 13.4 1.0 1 23 359 381 359 381 0.99
12 21 0.042 0.6 10.8 2.4 1 23 386 408 386 408 0.98
13 21 9.8e-05 0.0014 19.1 1.5 1 23 413 435 413 435 0.99
14 21 0.00016 0.0022 18.4 1.5 1 23 440 462 440 462 0.99
15 21 4.2e-05 0.0006 20.2 1.7 1 23 467 489 467 489 0.99
16 21 0.0037 0.053 14.1 0.6 1 21 494 514 494 515 0.96
17 21 0.023 0.33 11.6 2.3 1 23 533 555 533 555 0.99
18 21 0.00016 0.0022 18.4 1.5 1 23 560 582 560 582 0.99
19 21 4.2e-05 0.0006 20.2 1.7 1 23 587 609 587 609 0.99
20 21 0.00041 0.0058 17.1 1.4 1 23 614 636 614 636 0.99
21 21 1.5 21 5.9 1.0 1 23 641 663 641 663 0.96

Sequence Information

Coding Sequence
ATGGACtgtaatgaaagttattcaataaaatcagaagtggttgtaaatgaaacattttcctttagtggaaaatatgaagattatgAGAGTGAAGAATTGAAAGCAGAACCTCTAGATGTTAAAGCAGTTGCTAAGTGGGAAAGAGATATTCATATGAAGCATGCCAGTAGTTCCAAATGcgaatatatttgtaatgaatgtaattataaaacacagtggaAATCGAATCTaatgaaacatgtaaaaattcattctcctaatgaatataaatgtaatgaatgtgactacaaaacagtgTATAAACTTCAACTTAAAGAACACATCAGattccatactggtgatgaatataaatgtaaggcatgtgacttcaaaacaccatggaagcagacttttaaggaacatgtaaaaattcatactggtgatgaatataagtgcaaggaatgtgacTTCAAAACATCATGGAAACACAGTTTAGAGgcacatttcaaaattcatactggtgataaatataaatgtaatgaatgtgactacaaGACAGTGTATAAATTTCAACTTAAAGAAcacatcagaatccatactggtgatgaatataagtgtaaggcaTGTGACTTCAAAACACCATCGAAGCGGACTtttaaggaacatgtaaaacttcatactggtgataaatataaatgtaatgaatgtgattacaaaacagtgtggaaatatCACCTTAGACAAcacatcagaatccatactggtgatgaatataagtgcaaggaatgCGATTTCAAAACATCATGGAAACACAGTTTAgaggcacatttaaaaattcatactggtgataaatataaatgtaatgaatgtgactacaaaacagtgTATAAATATCTACTGAAAGAAcacatcagaatccatactggtgatgaatataaatgtaatgaatgtgactacaaaacaccatggaagcagTGGTTAAAGGTACATATAAAGCAACATACTGGTGAtgattataaatgtaatgaatgtgactataaaacaataagtaaatatcAACTTAAAGAACATAtaagaatccatactggtgatgaatataaatgtaatgaatgtgactataaaacagtttggaaatttcaacttaaagaacacatcagaatccatactggtgatgaatataaatgtaatgagtGTACCTACAAAACACCATATAAGCAGAGGTTAAAGTTACATATAAAACTACATACTGGTGATGTCTATAAATgcaatgaatgtgactataaatcagtgaaaaaatataaacttaaagcACACAttagaatccatactggtgaagaatataaatgtaatgaatgtgactataaaacagtgaaaaaatttcaacttacagaacacatcagaatccatactggtgatgaatataaatgtaatgattgtgactataaaacagtgaaaaaatataaacttaaagcACACAttagaatccatactggtgatgaatataaatgtaatgaatgtgactataaaacagtgaaaaaatttcaactttcaGAACACATCAGaatcatactggtgatgaatataagtACAACACATCAGaatcatactggtgatgaatataaatgtaaggaatgtgacttcAAAACATCATGGAAACACAGTTTAgaggcacatttaaaaattcatactggtgaagaatataaatgtaatgaatgtgactataaaacagtgaaaaaatttcaacttacagaacacatcagaatccatactggtgatgaatataaatgtaatgattgtgactataaaacagtgaaaaaatataaacttaaagcACACAttagaatccatactggtgatgaatataaatgtaatgaatgtgactataaaacagtgaaaaaatttcaactttcagaacacatcagaatccatactggtgatgaatataagtgtaaggcatgtgactataaaacaccatggaaacagagtTTAAAAAGACATGAAACAAtacatactggtgatgaatataaatATCAGAAGTTAAAGCCATCGATTCTAAAGCAGCTGGCTGAGGCAAATAGTCTTACACCGCAACCAGTGCACGTGCACTTCACCGATGATTCTGATACACTTTTTATTGAAGATGAGCTTGAGAGATATCAAATTAGTGGTAATGTAAATAAGGATGACTTGGTAACTGGCATATCCTGTGCTTTACTGGGATCTGATTTGGGAAATGGTAAATTTAATGTTGATGATATTTGTTTTGCTGGTATTCAAGCGCAGGTTGAGCGGCCTAtttttcaggaaaatttgtatgttgtatttatAAGCGGCCTGGATTTAGTTCATATAGAGAAGACATCATTGCCTTTAAGATTATTTGTAAATTGGATAAGTGGCCTTATATCAGATACTAGTGATATCAGTACTAACATTGTACGATTAATAATTGCCGGCAATAGCACATAcagcactcacgaaaaaattaAACCTACTATAAGTCTCACTTCAAGAAAAACAGAAATGCCTGAAGTGTTTGAAACTGTGAAGCTATTGGACACAGTTTTATTAGAATTAGCGCAAGTAATTGAAGTCGACGTAATGCCCGGAGAACATGACCCTTCCAACCACATATTACCGCAGCAAGCAATGCATCATTGCATGTTTCCAAAATCCATTGTGTACAAATCTCTCAATCTGGTATCCAACCCGTATGAGTGCGAAATTGGAAACATTCGAATTTTAGGAAATTCAGGACAAaccatttcaaacattttaggATTTTGTGAGATAAAATCTCCAGTCGATGCTTTGGAATCTTGTTTGGAATGGGCACATATGGCACCAACTGCACCAGATACATTAGGTTGTTTTCCGTTTTACGAAAATGATCCTTTTATAATCGAACAATGTCCACATGTTATGTTTACTGGAAATCAAAATAGTTTCAGTACCAAAATGGTACAAGGTGATGATGGACAGAATATTTGCTTGATTGCGGTGCCCGAGTTTTGTAATTCAAACACTGttgctattttaaatttaaagaatttagaTTGTTTTCCTTTATCGTTTATATAA
Protein Sequence
MDCNESYSIKSEVVVNETFSFSGKYEDYESEELKAEPLDVKAVAKWERDIHMKHASSSKCEYICNECNYKTQWKSNLMKHVKIHSPNEYKCNECDYKTVYKLQLKEHIRFHTGDEYKCKACDFKTPWKQTFKEHVKIHTGDEYKCKECDFKTSWKHSLEAHFKIHTGDKYKCNECDYKTVYKFQLKEHIRIHTGDEYKCKACDFKTPSKRTFKEHVKLHTGDKYKCNECDYKTVWKYHLRQHIRIHTGDEYKCKECDFKTSWKHSLEAHLKIHTGDKYKCNECDYKTVYKYLLKEHIRIHTGDEYKCNECDYKTPWKQWLKVHIKQHTGDDYKCNECDYKTISKYQLKEHIRIHTGDEYKCNECDYKTVWKFQLKEHIRIHTGDEYKCNECTYKTPYKQRLKLHIKLHTGDVYKCNECDYKSVKKYKLKAHIRIHTGEEYKCNECDYKTVKKFQLTEHIRIHTGDEYKCNDCDYKTVKKYKLKAHIRIHTGDEYKCNECDYKTVKKFQLSEHIRIILVMNISTTHQNHTGDEYKCKECDFKTSWKHSLEAHLKIHTGEEYKCNECDYKTVKKFQLTEHIRIHTGDEYKCNDCDYKTVKKYKLKAHIRIHTGDEYKCNECDYKTVKKFQLSEHIRIHTGDEYKCKACDYKTPWKQSLKRHETIHTGDEYKYQKLKPSILKQLAEANSLTPQPVHVHFTDDSDTLFIEDELERYQISGNVNKDDLVTGISCALLGSDLGNGKFNVDDICFAGIQAQVERPIFQENLYVVFISGLDLVHIEKTSLPLRLFVNWISGLISDTSDISTNIVRLIIAGNSTYSTHEKIKPTISLTSRKTEMPEVFETVKLLDTVLLELAQVIEVDVMPGEHDPSNHILPQQAMHHCMFPKSIVYKSLNLVSNPYECEIGNIRILGNSGQTISNILGFCEIKSPVDALESCLEWAHMAPTAPDTLGCFPFYENDPFIIEQCPHVMFTGNQNSFSTKMVQGDDGQNICLIAVPEFCNSNTVAILNLKNLDCFPLSFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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