Lyun006694.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001135.1:122036-124020[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.016 0.23 12.1 1.9 1 20 68 87 68 89 0.95
2 20 1.4 19 6.0 2.6 1 23 128 150 128 150 0.97
3 20 0.016 0.23 12.1 3.2 1 23 155 177 155 177 0.98
4 20 0.009 0.13 12.9 1.3 2 23 183 204 182 204 0.97
5 20 0.0069 0.098 13.3 1.9 1 23 209 231 209 231 0.99
6 20 0.051 0.72 10.5 1.4 2 23 237 258 236 258 0.97
7 20 0.031 0.43 11.2 1.0 2 23 264 285 263 285 0.97
8 20 3.6e-05 0.00051 20.5 1.7 2 23 292 313 291 313 0.97
9 20 0.00029 0.004 17.6 1.2 2 23 319 340 318 340 0.96
10 20 0.032 0.46 11.2 0.8 2 23 346 367 345 367 0.97
11 20 3.6e-05 0.00051 20.4 1.6 2 23 373 394 372 394 0.97
12 20 0.014 0.21 12.3 1.4 2 23 400 421 399 421 0.97
13 20 1.4e-05 0.0002 21.8 1.7 2 23 427 448 426 448 0.97
14 20 0.00025 0.0036 17.8 0.9 2 23 454 475 453 475 0.96
15 20 0.053 0.75 10.5 1.4 2 23 481 502 480 502 0.97
16 20 3.6e-05 0.00051 20.4 1.6 2 23 508 529 507 529 0.97
17 20 0.014 0.21 12.3 1.4 2 23 535 556 534 556 0.97
18 20 1.4e-05 0.0002 21.8 1.7 2 23 562 583 561 583 0.97
19 20 0.00025 0.0036 17.8 0.9 2 23 589 610 588 610 0.96
20 20 9.4e-05 0.0013 19.1 3.5 2 23 616 637 615 637 0.97

Sequence Information

Coding Sequence
ATGGATGTTGAATGCAatgaaaattgttcaataaaatctgaagtaactctaacagaaacattttctttttgtggagaaTACAGAGAGTATGggaataaagaattaaaatctGAGCCAGTAGATGccgaagaatcttttaaatgccAGGAAGAAGATAACCCTGCAAAGGGTATGGATATATCTATGGATCCTGTACAGCAATATACTTGTAATGATTGTAACTTTACAACAACGGAAAAGGATTGTCTAATAAAACATCTGACAAGTACTAACAACATTCAACAtttatgtaaagaatgtaactttaaaattccATTAGAATGTTCCTTaaatgaacatttaagaattcatCATGGGAAAACTGCCAAAAGTGGTGATTACTATATTTGTAATCAATGTGGTTTTAAAACACAATGGaaacataaactaaaaatacatataaataatcataaagGTAATaagtataagtgtaaggaatgcaactataaaactgtgtggaaatCTAATCTCTACACGCATATGAAATTTCACACAGGTGACaaattgaagtgtaaagaatgtgactataaaactgtgtggaaatCTAATCTCAACACACATAggaaaattcatgcaggtgatgaatataagtgtaaggaatgtgactacaaaactccttggaaacatttattaaaagacCATATAAGagttcatacaggtgatgaattgaaatgtaaagaatgtaactacAAAACTTCTTGGACACAGTCATTAAAAAACCACAtaagaattcatacaggtgttaAATTGCAATGTACAGAATGTGACTACCAAACTCCTtggaaacatttattaaaagatcatatgagaattcataactcaggtgataaattgaaatgtaaagaatgtgactacaaaactcctaGGAAATATGATCTTAATACACATATGAGAAATCATAATGGTGatgaattgaaatgtaaagaatgtgattataaaactgtgcggAAACAAGATCTTAAAAAACATCTGGAAATTCACATAGGTGATAAATtgaagtgtaaggaatgtgactacaaaacaccttGGACACAGTCATTAAAAAaccatatgagaattcatacaggtcatgaattgaaatgtaaacaatgtgactacaaaactcctaGGAAATATGATCTTAACacacatatgagaattcatacaggtgatggattgaaatgtaaagaatgtgactacaaaacttcTTGGACACAGTCATTAAAAAaccatatgagaattcatacaggtcatgaattgaaatgtaaagaatgtgactacaaaactacTAGGAAATATGATCTTAACAtgcatatgagaattcatacaggtgataaattgaaatgtaacgaatgtgactataaaactgtgCGGAAACAAGATCTTAAAAAACATCTggaaattcacacaggtgataaattgaagtgtaagaaatgtgactacaaaacaccttGGACACAGTCATTAAAAAaccatatgagaattcatacaggtgatggattgaaatgtaaacaatgtgactacaaaactcctaGGAAATATGATCTTAACacacatatgagaattcatacaggtgatggattgaaatgtaaagaatgtgactacaaaacttcTTGGACACAGTCATTAAAAAaccatatgagaattcatacaggtcatgaattgaaatgtaaagaatgtgactacaaaactacTAGGAAATATGATCTTAACAtgcatatgagaattcatacaggtgataaattgaaatgtaacgaatgtgactataaaactgtgCGGAAACAAGATCTTAAAAAACATCTggaaattcacacaggtgataaattgaagtgtaagaaatgtgactacaaaacttctaggaaatttctattaaaacaacatatgagaattcatactggtgataaacTGAAGTGA
Protein Sequence
MDVECNENCSIKSEVTLTETFSFCGEYREYGNKELKSEPVDAEESFKCQEEDNPAKGMDISMDPVQQYTCNDCNFTTTEKDCLIKHLTSTNNIQHLCKECNFKIPLECSLNEHLRIHHGKTAKSGDYYICNQCGFKTQWKHKLKIHINNHKGNKYKCKECNYKTVWKSNLYTHMKFHTGDKLKCKECDYKTVWKSNLNTHRKIHAGDEYKCKECDYKTPWKHLLKDHIRVHTGDELKCKECNYKTSWTQSLKNHIRIHTGVKLQCTECDYQTPWKHLLKDHMRIHNSGDKLKCKECDYKTPRKYDLNTHMRNHNGDELKCKECDYKTVRKQDLKKHLEIHIGDKLKCKECDYKTPWTQSLKNHMRIHTGHELKCKQCDYKTPRKYDLNTHMRIHTGDGLKCKECDYKTSWTQSLKNHMRIHTGHELKCKECDYKTTRKYDLNMHMRIHTGDKLKCNECDYKTVRKQDLKKHLEIHTGDKLKCKKCDYKTPWTQSLKNHMRIHTGDGLKCKQCDYKTPRKYDLNTHMRIHTGDGLKCKECDYKTSWTQSLKNHMRIHTGHELKCKECDYKTTRKYDLNMHMRIHTGDKLKCNECDYKTVRKQDLKKHLEIHTGDKLKCKKCDYKTSRKFLLKQHMRIHTGDKLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-