Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002108.1:5591845-5594530[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0096 0.14 12.8 1.9 1 23 150 172 150 172 0.95

2 24 0.0078 0.11 13.1 0.9 1 23 177 199 177 199 0.98

3 24 2.4 34 5.3 0.3 7 23 210 226 204 226 0.83

4 24 2.3 33 5.3 0.1 5 23 235 253 234 253 0.92

5 24 8.4e-05 0.0012 19.3 1.1 1 23 258 280 258 280 0.99

6 24 0.0068 0.097 13.3 1.2 1 23 285 307 285 307 0.98

7 24 0.0078 0.11 13.1 0.9 1 23 312 334 312 334 0.98

8 24 0.041 0.58 10.8 2.0 1 23 368 390 368 390 0.95

9 24 0.0078 0.11 13.1 0.9 1 23 395 417 395 417 0.98

10 24 6.3 89 4.0 0.1 5 23 426 444 425 444 0.92

11 24 0.00048 0.0068 16.9 2.4 1 23 449 471 449 471 0.98

12 24 0.0074 0.11 13.2 0.7 1 23 476 498 476 498 0.98

13 24 7.3 1e+02 3.8 0.4 1 9 503 511 503 523 0.86

14 24 0.016 0.23 12.1 0.6 1 23 528 550 528 550 0.98

15 24 8.4e-05 0.0012 19.3 1.1 1 23 555 577 555 577 0.99

16 24 0.0078 0.11 13.1 0.9 1 23 582 604 582 604 0.98

17 24 8.4e-05 0.0012 19.3 1.1 1 23 609 631 609 631 0.99

18 24 0.0068 0.097 13.3 1.2 1 23 636 658 636 658 0.98

19 24 0.0068 0.097 13.3 1.2 1 23 663 685 663 685 0.98

20 24 8.4e-05 0.0012 19.3 1.1 1 23 690 712 690 712 0.99

21 24 0.013 0.19 12.4 1.0 1 23 717 739 717 739 0.98

22 24 0.016 0.23 12.1 0.6 1 23 744 766 744 766 0.98

23 24 0.012 0.17 12.5 0.9 1 23 771 793 771 793 0.98

24 24 6.8e-05 0.00096 19.6 1.1 1 23 798 820 798 820 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0096	0.14	12.8	1.9	1	23	150	172	150	172	0.95
2	24	0.0078	0.11	13.1	0.9	1	23	177	199	177	199	0.98
3	24	2.4	34	5.3	0.3	7	23	210	226	204	226	0.83
4	24	2.3	33	5.3	0.1	5	23	235	253	234	253	0.92
5	24	8.4e-05	0.0012	19.3	1.1	1	23	258	280	258	280	0.99
6	24	0.0068	0.097	13.3	1.2	1	23	285	307	285	307	0.98
7	24	0.0078	0.11	13.1	0.9	1	23	312	334	312	334	0.98
8	24	0.041	0.58	10.8	2.0	1	23	368	390	368	390	0.95
9	24	0.0078	0.11	13.1	0.9	1	23	395	417	395	417	0.98
10	24	6.3	89	4.0	0.1	5	23	426	444	425	444	0.92
11	24	0.00048	0.0068	16.9	2.4	1	23	449	471	449	471	0.98
12	24	0.0074	0.11	13.2	0.7	1	23	476	498	476	498	0.98
13	24	7.3	1e+02	3.8	0.4	1	9	503	511	503	523	0.86
14	24	0.016	0.23	12.1	0.6	1	23	528	550	528	550	0.98
15	24	8.4e-05	0.0012	19.3	1.1	1	23	555	577	555	577	0.99
16	24	0.0078	0.11	13.1	0.9	1	23	582	604	582	604	0.98
17	24	8.4e-05	0.0012	19.3	1.1	1	23	609	631	609	631	0.99
18	24	0.0068	0.097	13.3	1.2	1	23	636	658	636	658	0.98
19	24	0.0068	0.097	13.3	1.2	1	23	663	685	663	685	0.98
20	24	8.4e-05	0.0012	19.3	1.1	1	23	690	712	690	712	0.99
21	24	0.013	0.19	12.4	1.0	1	23	717	739	717	739	0.98
22	24	0.016	0.23	12.1	0.6	1	23	744	766	744	766	0.98
23	24	0.012	0.17	12.5	0.9	1	23	771	793	771	793	0.98
24	24	6.8e-05	0.00096	19.6	1.1	1	23	798	820	798	820	0.99

Sequence Information

Coding Sequence: ATGGATATTAATTTTACTGAAAGTTGTTCAATAAAATCCGAaatgattttaacagaaacattttgtgaaaattatgaaGtTGTACATTGTGGTAATGCAGAACTGAAAACAGAGCCAGTAGATTACAAAGAATTATTTAAGTGTAAGGAAGAAGATGATCCTGCAGAGCACATGGATACATCTGCTGCCCCAATACAACAATGTTGTAGTAATGAGCGTAACTTAACAACTGAAAATTATTCTCTGCAAGGACATTCAAAAACtacagaaaatattgaatatttgtGTGAGTACTGTAACTTTAGAACTCATTTGGAGTGTTTCtcaaaaaaacaattgaaaattcaCAAGGAAGTAGATGATACATATATTACTAAGGAATCTAATTTTAAGACGCCACAGAAATTCTCTTTAGCACCACATGTAAAAACGTCAAGAAGTGAtgaatacatttgtaatgaatgtaattttaagacatTGAACAAATCTTATCTAAGGAGACATATGACAATTCATACAggcgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatataatctaaacgaacatgtcaaaattcatacaggtgatgaatgtaagtgtaaagaatgggattacaaaacagtgcggaaaagtGATCTacaggaacatgtcaaaattcatacaggtgaagaatataagtctaaagaatgtgattataaaacagtgtggaaaagtaatctacaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattacaaaacagtgcggaaaagtggtctaaaggaacatgtcaaaattcatacaggtcaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatataatctaaaggaacacgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatataatctaaacgaacatgtcaaaattcacaagGAAGTAGATGATACATATATTACTAAGGAATCTAATTTTAAGACGCCACAGAAATTCTCTTTAGCACCACATGTAAAAACGTCAAGAAGTGAtgaatacatttgtaatgaatgtaattttaagacatTGAACAAAACTTATCTAAGGAGACATATGACAATTCATACAggcgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatataatctaaacgaacatgtcaaaattcatacaggtgaagaatataagtctaaagaatgtgattataaaacagtgtggaaaagtgatctacaggaacatgtcaaaattcatacaggtaaggaacataaatgtaaagagtgtgattacaaaacagtgcggaaaagtggtctaaaggaacatgtcaaaattcatacaggtgaggaatatcagtgtaaagaatgtgattataaaacagtgtggaaatataatctaaacgaacatgtcaaaattcatacaggtgtggaatataagtgtaaagaatgtgattataaaacagtgtggaatataagtgaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtggtctaaaggaacatgttaaaattcatacaggtgaggaatataaatgtaaagagtgtgattacaaaacagtgcggaaaagtggtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatataatctaaacgaacatgtcaaaattcatacaggtgtggaatataagtgtaaagaatgtgattacaaaacagtgcggaaaagtggtctaaaggaacatgtcaaaattcatacaggcgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatataatctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaatataatctaaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgcggaaaagtggtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaaaataatctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtggtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaaccgtGTGGAAACGTAATCTacaggaacatgtcaaaattcatacaggtgtggaatataaatgtaaagagtgtgattacaaaacagtgcggaaaaatgatctaaaggcacatgtcaaaattcatacgggtgaggaatataagtttaagaatgtgattataaaacagtgtggaatataa
Protein Sequence: MDINFTESCSIKSEMILTETFCENYEVVHCGNAELKTEPVDYKELFKCKEEDDPAEHMDTSAAPIQQCCSNERNLTTENYSLQGHSKTTENIEYLCEYCNFRTHLECFSKKQLKIHKEVDDTYITKESNFKTPQKFSLAPHVKTSRSDEYICNECNFKTLNKSYLRRHMTIHTGEEYKCKECDYKTVWKYNLNEHVKIHTGDECKCKEWDYKTVRKSDLQEHVKIHTGEEYKSKECDYKTVWKSNLQEHVKIHTGEEYKCKECDYKTVRKSGLKEHVKIHTGQEYKCKECDYKTVWKYNLKEHVKIHTGEEYKCKECDYKTVWKYNLNEHVKIHKEVDDTYITKESNFKTPQKFSLAPHVKTSRSDEYICNECNFKTLNKTYLRRHMTIHTGEEYKCKECDYKTVWKYNLNEHVKIHTGEEYKSKECDYKTVWKSDLQEHVKIHTGKEHKCKECDYKTVRKSGLKEHVKIHTGEEYQCKECDYKTVWKYNLNEHVKIHTGVEYKCKECDYKTVWNISEHVKIHTGEEYKCKECDYKTVWKSGLKEHVKIHTGEEYKCKECDYKTVRKSGLKEHVKIHTGEEYKCKECDYKTVWKYNLNEHVKIHTGVEYKCKECDYKTVRKSGLKEHVKIHTGEEYKCKECDYKTVWKYNLKEHVKIHTGEEYKCKECDYKTVWKYNLKEHVKIHTGDEYKCKECDYKTVRKSGLKEHVKIHTGEEYKCKECDYKTVWKNNLKEHVKIHTGEEYKCKECDYKTVWKSGLKEHVKIHTGEEYKCKECDYKTVWKRNLQEHVKIHTGVEYKCKECDYKTVRKNDLKAHVKIHTGEEYKFKNVIIKQCGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -