Lyun007851.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001323.1:2131565-2134644[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.19 2.7 8.7 0.3 1 21 63 83 63 84 0.95
2 30 0.058 0.82 10.4 0.9 1 23 147 169 147 169 0.98
3 30 0.024 0.35 11.5 0.7 1 23 174 196 174 196 0.98
4 30 0.024 0.34 11.6 2.7 1 23 201 223 201 223 0.98
5 30 0.29 4.1 8.2 0.9 1 23 228 250 228 250 0.96
6 30 0.00038 0.0054 17.2 2.4 1 23 255 277 255 277 0.99
7 30 0.0081 0.12 13.1 1.1 1 23 282 304 282 304 0.98
8 30 0.11 1.6 9.4 2.7 1 23 309 331 309 331 0.98
9 30 0.11 1.6 9.4 2.8 1 23 336 358 336 358 0.98
10 30 0.022 0.31 11.7 1.4 1 23 363 385 363 385 0.98
11 30 0.0026 0.037 14.6 0.6 1 23 395 417 395 417 0.99
12 30 0.008 0.11 13.1 1.3 1 23 422 444 422 444 0.98
13 30 0.00022 0.0031 18.0 1.6 1 23 449 471 449 471 0.99
14 30 0.021 0.3 11.8 1.6 1 23 476 498 476 498 0.98
15 30 0.46 6.5 7.5 1.0 1 23 503 525 503 525 0.95
16 30 0.0058 0.082 13.5 1.6 1 23 530 552 530 552 0.99
17 30 0.0081 0.12 13.1 1.1 1 23 557 579 557 579 0.98
18 30 0.0032 0.045 14.3 0.5 1 23 584 606 584 606 0.98
19 30 0.0081 0.12 13.1 1.1 1 23 630 652 630 652 0.98
20 30 0.11 1.6 9.4 2.7 1 23 657 679 657 679 0.98
21 30 0.11 1.6 9.4 2.8 1 23 684 706 684 706 0.98
22 30 0.061 0.87 10.3 1.5 1 23 711 733 711 733 0.98
23 30 6.3e-05 0.0009 19.7 1.6 1 23 738 760 738 760 0.99
24 30 0.008 0.11 13.1 1.3 1 23 765 787 765 787 0.98
25 30 0.00022 0.0031 18.0 1.6 1 23 792 814 792 814 0.99
26 30 0.021 0.3 11.8 1.6 1 23 819 841 819 841 0.98
27 30 0.46 6.5 7.5 1.0 1 23 846 868 846 868 0.95
28 30 0.00046 0.0065 17.0 2.0 1 23 873 895 873 895 0.99
29 30 0.5 7.1 7.4 6.6 1 23 900 922 900 922 0.98
30 30 0.0054 0.077 13.6 0.9 1 23 927 949 927 949 0.99

Sequence Information

Coding Sequence
ATGGATGTTGATTCGATTGAAAATTTTCCACTCAAGTCTGAAGTGAATTTGACAGAAACTTATTCATTTTATGGAGAATACCAAGATTATGAGGATGCAGAATTGAAACGACCGAAAACTGAGTCAGTAAATTATGAAGAATCGtttaaatgtaaggaagaagATAATCCTGTTCCACTACAACAATATTCCTGTAACGAGTGTAATTTTATGACAACGGAAAAAGATTTTCTActagaacatttgaaaattactaaaaaggttcaatttttttgtaaaagatgcAACTTTAAAACCTGGTTAGAATGTTCTATAACAGAGCATTTGAGGACTCACAATGAAGTAGATAGTAAATATATCACTgaggaatgtaattttaagtctCCAAAGAATTTTTCGTTGACGCCACAGATAAAGACGTCAAGAAATGGTGACCagtatatttgtaatgaatgtaattataccacgttaataaaaaaatatttatggagACATATGAAGATTCACTCaactaataaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtacTCTGATGGACcatgtgaaaattcacacaggtgataaatataaatgtaaaaaatgcgattttaaaacagtgtggaaagaaAATCTGAAGAAACACTACAatattcatactggtgatgaatataaatgtaaagaatgtgattataaaacattatggaaaagtaatctgaAGGTTCATGCCAAAATTCATAtaaatgatgaatataagtgtaaagaatgtaattataaaacagtgcggaaaaacTATCTggagaaacatgtcaaaattcacacaggtgatgaatataaatgtaacacatgtgattacaaaacagtttgGAAAGAAAATCTGAAGAAACATGTCAATATTCATACTggcaatgaatataaatgtgaaaTATGCGATTACAAAACAGTGTGGAAGAAATGTCTGAAAAAACATGTCAATATTCACACAggcaatgaatataaatgtaaagaatgcgattataaaacagtgtggaaacattatctaaaggaacacgtcaaaatacatactggtgatgaatataaatgtaaaaactgCGATTtcaaaacagtgtggaaagaaAATCTGAAGAAACATGTCAATATTCATACTGgcgataaatataaatgtgatgaatataaatgtgaaaTATGCGATTACAAAACAGTTTGGAAAGAAAATCtgaagaaacatgtcaaaattcacacaggtgatgaatataaatgtaaaaactgCGACtacaaaacagtgtggaaagaaAATCTGAAGAAACATGTCAATATTCATACTggcaatgaatataaatgtaaagaatgtgattataaaacagcgcaGAAAAATTATCTggagaaacatgtcaaaatacacacaggcgatgaatataaatgtaaaaaatgcgaatacaaaacagtgtggaaagaaaatttgaagaaacatgTCAATATTCAtactggcgatgaatataaatgtaaagaatgtgattataaaacattgtggaaaAGTAGTCTGAAAgttcatgtcaaaattcatacaaatgatgaatataagtgtaaagaatgtaattataaaacagtgtggaaagaaAATCtgaagaaacatgtcaaaattcacacaggtgatgaatataaatgtaacacgtgtgattacaaaacagtttgGAAAGAAAATCTGAAGAAACATGTCAATATTCATACTggcaatgaatataaatgtgaaatatgcgattacaaaacagtgtggaaagaaAATCTGAAGAAACATGTCAATATTCACACAggcaatgaatataaattgcggaaagatTATCTGgaaaaacatgtcaaaattcacacaggtgatgaatataaatgtaacacatgtgattacaaaacagtttgGAAAGAAAATCTGAAGAAACATGTCAATATTCATACTggcaatgaatataaatgtgaaaTATGCGATTACAAAACAGTGTGGAAGAAATGTCTGAAAAAACATGTCAATATTCACACAggcaatgaatataaatgtaaagaatgcgattataaaacagtgtggaaacattatctaaaggaacacgtcaaaatacatactggtgatgaatataaatgtaaaaactgCGATTtcaaaacagtgtggaaagatACTCTGAAGAAACATGTCAATATTCATACTGgcgataaatataaatgtaaagaatgtgattataaaacagtgcggaaagatTATCTGgaaaaacatgtcaaaattcacacaggtgatgaatataaatgtaaaaactgCGACtacaaaacagtgtggaaagaaAATCTGAAGAAACATGTCAATATTCATACTggcaatgaatataaatgtaaagaatgtgattataaaacagcgcaGAAAAATTATCTggagaaacatgtcaaaatacacacaggcgatgaatataaatgtaaaaaatgcgaatacaaaacagtgtggaaagaaaatttgaagaaacatgTCAATATTCACATCggtgacaaatataaatgtaaagaatgtgattataagacatTGTGGAAAAGTAGTCTGAAAgttcatgttaaaattcatacaaatgatgaatataagtgtaaagaatgtgattataaaacggtgcggAAAAATTATCTGaaggatcatgtcaaaattcacacaggtaatgaatataaatgtaaagaatgcgattttaaaacagtgtggaaacatcatctaaaggaacacatgaaattccatacaggtgatgaatataaatgcaaagaatgtaattataaaacagcatggagaAGTAATCTGAAAgttcatgttaaaattcatactgatgattaa
Protein Sequence
MDVDSIENFPLKSEVNLTETYSFYGEYQDYEDAELKRPKTESVNYEESFKCKEEDNPVPLQQYSCNECNFMTTEKDFLLEHLKITKKVQFFCKRCNFKTWLECSITEHLRTHNEVDSKYITEECNFKSPKNFSLTPQIKTSRNGDQYICNECNYTTLIKKYLWRHMKIHSTNKYKCKECDYKTVWKSTLMDHVKIHTGDKYKCKKCDFKTVWKENLKKHYNIHTGDEYKCKECDYKTLWKSNLKVHAKIHINDEYKCKECNYKTVRKNYLEKHVKIHTGDEYKCNTCDYKTVWKENLKKHVNIHTGNEYKCEICDYKTVWKKCLKKHVNIHTGNEYKCKECDYKTVWKHYLKEHVKIHTGDEYKCKNCDFKTVWKENLKKHVNIHTGDKYKCDEYKCEICDYKTVWKENLKKHVKIHTGDEYKCKNCDYKTVWKENLKKHVNIHTGNEYKCKECDYKTAQKNYLEKHVKIHTGDEYKCKKCEYKTVWKENLKKHVNIHTGDEYKCKECDYKTLWKSSLKVHVKIHTNDEYKCKECNYKTVWKENLKKHVKIHTGDEYKCNTCDYKTVWKENLKKHVNIHTGNEYKCEICDYKTVWKENLKKHVNIHTGNEYKLRKDYLEKHVKIHTGDEYKCNTCDYKTVWKENLKKHVNIHTGNEYKCEICDYKTVWKKCLKKHVNIHTGNEYKCKECDYKTVWKHYLKEHVKIHTGDEYKCKNCDFKTVWKDTLKKHVNIHTGDKYKCKECDYKTVRKDYLEKHVKIHTGDEYKCKNCDYKTVWKENLKKHVNIHTGNEYKCKECDYKTAQKNYLEKHVKIHTGDEYKCKKCEYKTVWKENLKKHVNIHIGDKYKCKECDYKTLWKSSLKVHVKIHTNDEYKCKECDYKTVRKNYLKDHVKIHTGNEYKCKECDFKTVWKHHLKEHMKFHTGDEYKCKECNYKTAWRSNLKVHVKIHTDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-