Lyun000141.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:5290916-5302974[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 2.1 30 5.5 2.4 1 23 117 139 117 139 0.97
2 34 0.1 1.5 9.6 1.0 1 23 238 260 238 260 0.98
3 34 0.0019 0.028 15.0 1.4 1 23 265 287 265 287 0.99
4 34 0.0007 0.0099 16.4 1.4 1 23 292 314 292 314 0.99
5 34 0.12 1.7 9.3 0.8 1 23 319 341 319 341 0.98
6 34 0.043 0.62 10.8 1.4 1 23 346 368 346 368 0.99
7 34 0.0019 0.028 15.0 1.4 1 23 373 395 373 395 0.99
8 34 0.0007 0.0099 16.4 1.4 1 23 400 422 400 422 0.99
9 34 0.12 1.7 9.3 0.8 1 23 427 449 427 449 0.98
10 34 1.2 16 6.3 0.5 1 23 454 476 454 476 0.90
11 34 0.067 0.95 10.2 0.6 1 23 481 503 481 503 0.98
12 34 0.00027 0.0038 17.7 2.2 1 23 508 530 508 530 0.99
13 34 0.00011 0.0015 18.9 1.7 1 23 535 557 535 557 0.99
14 34 4.5e-05 0.00064 20.1 1.7 1 23 562 584 562 584 0.98
15 34 0.68 9.6 7.0 0.7 1 23 589 611 589 611 0.96
16 34 8.1e-05 0.0011 19.4 0.9 1 23 616 638 616 638 0.99
17 34 0.0044 0.063 13.9 1.0 1 23 643 665 643 665 0.99
18 34 0.00058 0.0082 16.7 1.4 1 23 670 692 670 692 0.98
19 34 0.049 0.69 10.6 3.1 1 23 697 719 697 719 0.98
20 34 0.2 2.8 8.7 1.9 1 23 724 746 724 746 0.98
21 34 0.041 0.58 10.8 1.3 1 23 922 944 922 944 0.97
22 34 3.2 45 4.9 1.6 1 23 976 998 976 998 0.81
23 34 0.0036 0.051 14.2 3.3 1 23 1003 1025 1003 1025 0.99
24 34 9 1.3e+02 3.5 5.2 1 23 1030 1052 1030 1052 0.97
25 34 0.23 3.3 8.5 3.3 1 23 1057 1079 1057 1079 0.99
26 34 0.8 11 6.8 2.5 1 23 1084 1106 1084 1106 0.98
27 34 0.26 3.7 8.3 1.3 1 23 1111 1133 1111 1133 0.97
28 34 0.0051 0.072 13.7 0.8 1 23 1138 1160 1138 1160 0.98
29 34 6.8e-05 0.00097 19.6 1.7 1 23 1165 1187 1165 1187 0.99
30 34 0.00041 0.0057 17.1 1.5 1 23 1192 1214 1192 1214 0.99
31 34 1.7 24 5.8 3.4 1 23 1219 1241 1219 1241 0.98
32 34 0.0096 0.14 12.8 0.7 1 23 1246 1268 1246 1268 0.98
33 34 0.17 2.4 8.9 2.5 2 23 1274 1295 1273 1295 0.96
34 34 0.0093 0.13 12.9 0.8 1 23 1300 1322 1300 1322 0.98

Sequence Information

Coding Sequence
ATGGATATGGAAACGGTAgactttattgaaagttgtgctCTAAAATcggaagtgattttaacagagacattttctttttgtggaaactACGAAGGTAAGAATGGGTCTAACATTACAACAATGGTTTTAAACCATGAAATGTACCTTTTAGAATGGGGGAGTAAGGAACTGAAACCCGAGCCAATACATTATGAAGAAACGCTTAAACCCAAAGAAGAAAATGGTCTGGCAGAACCCATAAATTCACATGCTGCTCCGATGCAACAAGATTTTTGTAATGACTGTAATTTTAAACCAATTGGAGAAAATGCTCTAATAGAAGTTTCGAAAGTTACTAAACACCTTAAATACtcttgtaaggaatgtaactataCAACCGAGTTAGAATGTTCTATAAAAGAGCATACAAGGGTTCACAGTGACGgatataatattgaagaatgtaattttaaggcGCCACAGATTTTCTCATAtgcttgtaatgaatgtaattacaccacattgaacaaaaattatcactGGAAACATGTAAAGATTCACAAAGATGTAACATATGGTTGCGAGAAACTTGATTATAATACAGGAAAAAGTCACTTTACAgcacataaaaaaattcaatctgTTGATGAATATGAGTGTACAAAGTATGATTATGAAGCAGCAAGAAAAGCTActttaaagcaaaatttgaaaattcattctggtgacaaatatatgtgtaaagaatgtgattataaaactatatggaaaaaatatctaaaggaacatgtcagaattcatacaggtgatgaatataagtgtaaagaatgtgagtataaaactgtacggaaaaatcttctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaactatacggaaaaatcttctaaaggaacatgtcaaaattcatacagatgatgaatataagtgtaaagaatgtgattataaaactatatggaaaaatcttctaaaggaacatgttaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaactatatggaaaaaatatctaaaggaacatgtcagaattcatacaggtgatgaatataagtgtaaagaatgtgagtataaaactgtacggaaaaatcttctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaactatacggaaaaatcttctaaaggaacatgtcaaaattcatacagatgatgaatataagtgtaaagaatgtgattataaaactatatggaaaaatcttctaaaggaacatgttaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagtatggaaaaatgctataatgcaacatgtcaaaattcatatagatgatgaatataagtgtaatgaatgtgattataaaactatatggaAAAGAGagctaatgcaacatgtcaaagttcatacagatgttgaatataagtgtaaacaatgtgattataaaacagcaagaaaaggtactttaaagcaacatttgaaaattcattctggtgacaaatataagtgtaaagaatgtgattataaaactgcaagaaaaggtactttaaagcaacatttgaaaattcatactggtgacaaatttaagtgtaaagagtgtgattataaaactgtacggaaaagtaacctaatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagagtgtgattatgaaacggtatggaaaaatcgtctgaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtacggaaagATCTTCTGAAGgcacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtgaCCTAACacaacatctcaaaattcatactggtgataaatataggtgtaaagaatgtgattataaaactatacggAAAAGAGAGCTAATGCAACATGTTAaagttcatactggtgatgaatataagtgtaaagagtgtgattataaaacggtatggaaaagtaACCTAATGCAGCATGTCAAACATCATacaggtgttgaatataagtgtaaagaatgtgattataaaactgtatggaaaaatcaattaaaggaacatttcaaaattcatactggtgacaaatataaagaattgGGGTTATGTGATATCGCCTTCCTTCTTTTGATTATCGCATGCATTAAAAATAAGGTAaaacaacttcaaaaatttaGTGTATCTAATACAATGGATATCGACTCGATAgactttattgaaagttgtgctataaaatcagaagtgattttaacacagacattttctttttgtgggaagTACGAAGATTGTGGGAGTAGGGAACTAAAACCGGAGATAGTAGATTACGAAGAATTGCTTAAacctaaagaagaaaatgagCTGGGAAAACCTATAGATTTACATGCTGCTCTGATGCTACAAGATTTTTGTACTGActctaattttaaaacaattggaAAAAATGCTCTACTAGAAGCTTCAAAACTTACAAGCTTTAAATACTcctgtaaggaatgtaactttacaaccGAGATAGAATGTTTTATAAAAGAGCATACAAGGATTCACAGTGATGgatataatattgaagaatgtaattttaaaacgccACAGATTTTCTCATAtgcttgtaatgaatgtaattacaccacattgaacaaaaattatctaaGGAAACATGTGAAGATTCACAAAGGTGTAATATATAGTTGCGAGAAATATGATTATAATACTGGGTGGAAAAGTCACTTCACAGaacatggaaaaattcattatagtgatgaatacaagtgtacaaagtgtgattataaaacagcaaggAAAGGTATTTCAAagcaacatttgaaaattcattctggtgataaatataagtgtaaagaatgtgattataaaacaacatggaaaaGCCATCTAATGCAGcacatcaaaatacatacaggcgatgaatataagtgtaaagaatgtgattataaaacaatatgcaaACACCGTCTAACGGAGCATGTCAATATTCatgcaggtgatgaatataagtgtaaagaatgtgattataaaactatatggaaaaaatgtttaaaggaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattatataacTATATGGAAATACTGTctgaaggaacatgtcaaaattcatacaggtgatgagtataagtgtaaagaatgtgattataaaacgttatggaaaagtaatcttacgcaacatgtcaaaattcataccggtgtcaaatataagtgtaaagaatgtgattataaaacagtatggaaaagtcttctaaagaaacatatcgaaattcatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtacggaaaagtcttctaaaggaacatctcaaaattcatacaggtgataaatataagtgcaaagagtgtgattataaaactatacggAAAAGAgacctaatgcaacatgtcaaaattcataccggtgacacatataagtgtaaagaatgtaattataaaactatatggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaggtAATCTAacgcaacatgtaaaaattcataccggtgacaaatgtaagtgtaaggaatgcgattataaaacagtatggaaaagtcttctaaaggaacatctcaaaattcacaaaggtgataaatataagtgtaaagtgtgcgattataaaactatatggaaaagtaatttaatgcaacatgttaaaattcatacaggtgataaatattGCTAA
Protein Sequence
MDMETVDFIESCALKSEVILTETFSFCGNYEGKNGSNITTMVLNHEMYLLEWGSKELKPEPIHYEETLKPKEENGLAEPINSHAAPMQQDFCNDCNFKPIGENALIEVSKVTKHLKYSCKECNYTTELECSIKEHTRVHSDGYNIEECNFKAPQIFSYACNECNYTTLNKNYHWKHVKIHKDVTYGCEKLDYNTGKSHFTAHKKIQSVDEYECTKYDYEAARKATLKQNLKIHSGDKYMCKECDYKTIWKKYLKEHVRIHTGDEYKCKECEYKTVRKNLLKEHVKIHTGDEYKCKECDYKTIRKNLLKEHVKIHTDDEYKCKECDYKTIWKNLLKEHVKIHTGDEYKCKECDYKTIWKKYLKEHVRIHTGDEYKCKECEYKTVRKNLLKEHVKIHTGDEYKCKECDYKTIRKNLLKEHVKIHTDDEYKCKECDYKTIWKNLLKEHVKIHTGDEYKCKDCDYKTVWKNAIMQHVKIHIDDEYKCNECDYKTIWKRELMQHVKVHTDVEYKCKQCDYKTARKGTLKQHLKIHSGDKYKCKECDYKTARKGTLKQHLKIHTGDKFKCKECDYKTVRKSNLMQHVKIHTGDKYKCKECDYETVWKNRLKEHVKIHTGDEYKCKECDYKTVRKDLLKAHVKIHTGDEYKCKECDYKTVWKSDLTQHLKIHTGDKYRCKECDYKTIRKRELMQHVKVHTGDEYKCKECDYKTVWKSNLMQHVKHHTGVEYKCKECDYKTVWKNQLKEHFKIHTGDKYKELGLCDIAFLLLIIACIKNKVKQLQKFSVSNTMDIDSIDFIESCAIKSEVILTQTFSFCGKYEDCGSRELKPEIVDYEELLKPKEENELGKPIDLHAALMLQDFCTDSNFKTIGKNALLEASKLTSFKYSCKECNFTTEIECFIKEHTRIHSDGYNIEECNFKTPQIFSYACNECNYTTLNKNYLRKHVKIHKGVIYSCEKYDYNTGWKSHFTEHGKIHYSDEYKCTKCDYKTARKGISKQHLKIHSGDKYKCKECDYKTTWKSHLMQHIKIHTGDEYKCKECDYKTICKHRLTEHVNIHAGDEYKCKECDYKTIWKKCLKEHIKIHTGDEYKCKECNYITIWKYCLKEHVKIHTGDEYKCKECDYKTLWKSNLTQHVKIHTGVKYKCKECDYKTVWKSLLKKHIEIHTGDEYKCKECDYKTVRKSLLKEHLKIHTGDKYKCKECDYKTIRKRDLMQHVKIHTGDTYKCKECNYKTIWKNCLKEHVKIHTGDEYKCKECDYKTVWKGNLTQHVKIHTGDKCKCKECDYKTVWKSLLKEHLKIHKGDKYKCKVCDYKTIWKSNLMQHVKIHTGDKYC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-