Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000125.1:645738-648337[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.056 0.79 10.4 0.1 1 21 68 88 68 89 0.94

2 27 0.027 0.38 11.4 1.7 2 23 148 169 147 169 0.96

3 27 1.2e-05 0.00017 22.0 3.1 1 23 174 196 174 196 0.99

4 27 0.23 3.2 8.5 1.2 1 23 201 223 201 223 0.96

5 27 0.0025 0.036 14.6 0.4 1 23 228 250 228 250 0.98

6 27 0.00012 0.0016 18.9 1.8 1 23 255 277 255 277 0.99

7 27 0.0049 0.069 13.8 3.3 1 23 282 304 282 304 0.98

8 27 0.053 0.75 10.5 0.5 1 23 309 331 309 331 0.97

9 27 0.0068 0.097 13.3 1.8 1 23 336 358 336 358 0.99

10 27 0.049 0.69 10.6 0.5 1 23 363 385 363 385 0.98

11 27 0.001 0.014 15.9 1.7 1 23 390 412 390 412 0.98

12 27 0.0049 0.069 13.8 3.3 1 23 417 439 417 439 0.98

13 27 0.28 3.9 8.2 0.4 1 23 444 466 444 466 0.96

14 27 0.0068 0.097 13.3 1.8 1 23 471 493 471 493 0.99

15 27 0.0025 0.035 14.7 0.7 1 23 498 520 498 520 0.98

16 27 0.001 0.014 15.9 1.7 1 23 525 547 525 547 0.98

17 27 0.0049 0.069 13.8 3.3 1 23 552 574 552 574 0.98

18 27 0.28 3.9 8.2 0.4 1 23 579 601 579 601 0.96

19 27 0.0099 0.14 12.8 2.0 1 23 606 628 606 628 0.99

20 27 0.031 0.44 11.2 0.5 1 23 633 655 633 655 0.98

21 27 0.0035 0.049 14.2 2.4 1 23 660 682 660 682 0.98

22 27 0.033 0.46 11.2 2.0 1 23 687 709 687 709 0.98

23 27 0.062 0.88 10.3 0.6 1 23 714 736 714 736 0.98

24 27 0.2 2.8 8.7 1.1 1 23 741 763 741 763 0.97

25 27 0.14 2 9.2 0.7 1 23 768 790 768 790 0.98

26 27 0.0088 0.12 12.9 0.4 1 23 795 817 795 817 0.97

27 27 0.011 0.15 12.7 3.6 1 23 822 844 822 844 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.056	0.79	10.4	0.1	1	21	68	88	68	89	0.94
2	27	0.027	0.38	11.4	1.7	2	23	148	169	147	169	0.96
3	27	1.2e-05	0.00017	22.0	3.1	1	23	174	196	174	196	0.99
4	27	0.23	3.2	8.5	1.2	1	23	201	223	201	223	0.96
5	27	0.0025	0.036	14.6	0.4	1	23	228	250	228	250	0.98
6	27	0.00012	0.0016	18.9	1.8	1	23	255	277	255	277	0.99
7	27	0.0049	0.069	13.8	3.3	1	23	282	304	282	304	0.98
8	27	0.053	0.75	10.5	0.5	1	23	309	331	309	331	0.97
9	27	0.0068	0.097	13.3	1.8	1	23	336	358	336	358	0.99
10	27	0.049	0.69	10.6	0.5	1	23	363	385	363	385	0.98
11	27	0.001	0.014	15.9	1.7	1	23	390	412	390	412	0.98
12	27	0.0049	0.069	13.8	3.3	1	23	417	439	417	439	0.98
13	27	0.28	3.9	8.2	0.4	1	23	444	466	444	466	0.96
14	27	0.0068	0.097	13.3	1.8	1	23	471	493	471	493	0.99
15	27	0.0025	0.035	14.7	0.7	1	23	498	520	498	520	0.98
16	27	0.001	0.014	15.9	1.7	1	23	525	547	525	547	0.98
17	27	0.0049	0.069	13.8	3.3	1	23	552	574	552	574	0.98
18	27	0.28	3.9	8.2	0.4	1	23	579	601	579	601	0.96
19	27	0.0099	0.14	12.8	2.0	1	23	606	628	606	628	0.99
20	27	0.031	0.44	11.2	0.5	1	23	633	655	633	655	0.98
21	27	0.0035	0.049	14.2	2.4	1	23	660	682	660	682	0.98
22	27	0.033	0.46	11.2	2.0	1	23	687	709	687	709	0.98
23	27	0.062	0.88	10.3	0.6	1	23	714	736	714	736	0.98
24	27	0.2	2.8	8.7	1.1	1	23	741	763	741	763	0.97
25	27	0.14	2	9.2	0.7	1	23	768	790	768	790	0.98
26	27	0.0088	0.12	12.9	0.4	1	23	795	817	795	817	0.97
27	27	0.011	0.15	12.7	3.6	1	23	822	844	822	844	0.98

Sequence Information

Coding Sequence: atGGATTTTGACTGTAATGAAAGTTACCCAATAAAATCTGATATAATTTTACaggaaacattttcattttctggAAACTATGAAGattatggGAATGGAGAATTAAAAACGGAGCcggtagaaatagaaaaatcatttaaatacgAAGAAGAGGATAATCTTGTGGAATTAGCCGATGTGCGTACTGTGTCCgcacaaaaatatatttgtaatgaatgtaattttgttacaacggagaaaaattctttaatacaaCACTTGAGCATTACTAAAAATGTTCGCTATTTTTGCAaagaatgtaactttaaaacccTATTTGAATGTTCAATAAAAGACCATTTCAGGATTCATAAAGGGGTTGGTTGTAgatatattactaaaaaatgtaatttcaagttGCCACAAATTTTCTGTTTAGCACCACAAGGTGGCACCAAGCTTATTTGTAAGGAATGTCATTATAGAACACCACAGACCCaaagtctaaaggaacatttaaaaattcatactgatgttgaatataaatgtaaggaatgtgattataaaacatcacagAAAcgtaatctaaagcaacatttgaGAATTCATAGTGgacataaatataagtgtaaggaatgtgattataaaacattgtggaaaaataatttaaaggcacatttaaaaattcatactagtgatgaatataaatgcaatgaatgtgattataaaacaccatggaaagaGAATCTAAAGCGACATTTGGCAATTCATAGTAATCATaaatataagtgcaaggaatgtgattataaaacaccacggAAAAcaagtctaaaggaacatttaaaaattcatagtggtgatgaatataagtgtaaggaatgtgattataaaacactacggaaaacaagtttaaagaaacatttaaaaattcatactggtgatgaatataaatgcaaggaatgtgattatagaacaCCATGGAAAGAGACTCTAAAGCAACATTTGGTAATTCATAGTgatcatgaatataagtgtaaggaatgtgattataaaaccgcATGGAAAACAAgtctaaagaaacatttaaaaattcatacgggtgatgaatataaatgcaaggaatgtgattataaaacaccatggaaagaGAATATAAAGCGACATTTGGAAATTCATAGTAATCATGAATATAACTGTagggaatgtgattataaaacaccacggAAAACAAGTCTAaggcaacatttaaaaattcatactgataatgaatataagtgtaaggaatgtgattataaaacactacggaaaacaagtttaaagaaacatttaaaaattcatactggtgatgaatataaatgcaaggaatgtaattatagaataccatggaaagagactctaaagcaacatttggtaattcatagtgatcatgaatataagtgtaaggaatgtgattataaaaccgcATGGAAAACAAgtctaaagaaacatttaaaaattcatactggtgatgaatataaatgcaaggaatgtgattataaaacaccatggaaagaGAATCTAAAGCGACATTTGGAAATTCATAGTAATCATGAATATAACTGTagggaatgtgattataaaacaccacggAAAACAAGTCTAaggcaacatttaaaaattcatactgataatgaatataagtgtaaggaatgtgattataaaacactacggaaaacaagtttaaagaaacatttaaaaattcatactggtgatgaatataaatgcaagGAATGTAATTATAGAATACCATGGAAAGAGACTCTAAAGCAACATTTAGTAATTCACAGTgatcatgaatataagtgtaaggaatgtgattataaaaccatATGGAAAACAAgtctaaagaaacatttaaaaattcatacgggtgatgaatataaatgcaaagaatgtgattataaaacaccatggaaagagaatgtAAAGCGACATTTGGAAATTCATAGTAttcatgaatataagtgtaaggaatgtgattataaaacactacgGAAAAcaaatctaaaggaacatttaaaaattcatactggtaatgaatataagtgtaaggaatgtgattataaaacactacgGAAAAACAGTCTCAAaggtcatttaaaaattcatactggtgatgaatataagtgtaatgaatgtgattttaaaactccATGGAAAACAAGTCTAACTAATCATGTAAATATTCAtgctggtaatgaatataagtgtaaggaatgtgattataaaacagtatggaaaaatagactaaatgaacatttaaaaattcatactggtgatgaatataagtgtaatgaatgtgattttaaaactccATGGAAAACAAGTCTAAGTaatcatgtaaaaattcatactggtaatgaatataactgtaaagaatgtgattatagaacaCCGTGGAAAGAGAATCTAAAGCGACATTTAGCAATTCATAGTgatcatgaatataagtgtaaggattgcaattataaaacactaCGGAAAACGAGTCTAACGAATCACGTAAAAACtcataattgtaattaa
Protein Sequence: MDFDCNESYPIKSDIILQETFSFSGNYEDYGNGELKTEPVEIEKSFKYEEEDNLVELADVRTVSAQKYICNECNFVTTEKNSLIQHLSITKNVRYFCKECNFKTLFECSIKDHFRIHKGVGCRYITKKCNFKLPQIFCLAPQGGTKLICKECHYRTPQTQSLKEHLKIHTDVEYKCKECDYKTSQKRNLKQHLRIHSGHKYKCKECDYKTLWKNNLKAHLKIHTSDEYKCNECDYKTPWKENLKRHLAIHSNHKYKCKECDYKTPRKTSLKEHLKIHSGDEYKCKECDYKTLRKTSLKKHLKIHTGDEYKCKECDYRTPWKETLKQHLVIHSDHEYKCKECDYKTAWKTSLKKHLKIHTGDEYKCKECDYKTPWKENIKRHLEIHSNHEYNCRECDYKTPRKTSLRQHLKIHTDNEYKCKECDYKTLRKTSLKKHLKIHTGDEYKCKECNYRIPWKETLKQHLVIHSDHEYKCKECDYKTAWKTSLKKHLKIHTGDEYKCKECDYKTPWKENLKRHLEIHSNHEYNCRECDYKTPRKTSLRQHLKIHTDNEYKCKECDYKTLRKTSLKKHLKIHTGDEYKCKECNYRIPWKETLKQHLVIHSDHEYKCKECDYKTIWKTSLKKHLKIHTGDEYKCKECDYKTPWKENVKRHLEIHSIHEYKCKECDYKTLRKTNLKEHLKIHTGNEYKCKECDYKTLRKNSLKGHLKIHTGDEYKCNECDFKTPWKTSLTNHVNIHAGNEYKCKECDYKTVWKNRLNEHLKIHTGDEYKCNECDFKTPWKTSLSNHVKIHTGNEYNCKECDYRTPWKENLKRHLAIHSDHEYKCKDCNYKTLRKTSLTNHVKTHNCN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -