Lyun006693.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001135.1:104133-106658[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0046 0.065 13.8 2.8 1 20 68 87 68 89 0.95 2 22 1.3 19 6.1 2.6 1 23 147 169 147 169 0.97 3 22 0.15 2.1 9.1 2.8 1 23 174 196 174 196 0.97 4 22 0.0013 0.018 15.6 0.9 2 23 202 223 201 223 0.97 5 22 0.43 6.1 7.6 1.1 2 23 229 250 228 250 0.95 6 22 4.9e-05 0.0007 20.0 1.2 2 23 256 277 255 277 0.97 7 22 0.0043 0.061 13.9 0.8 2 23 283 304 282 304 0.97 8 22 0.064 0.9 10.2 1.1 2 23 310 331 309 331 0.97 9 22 2.4e-05 0.00034 21.0 0.2 2 23 337 358 336 358 0.97 10 22 0.064 0.9 10.2 1.1 2 23 364 385 363 385 0.97 11 22 2.4e-05 0.00034 21.0 0.2 2 23 391 412 390 412 0.97 12 22 0.00017 0.0024 18.4 1.1 2 23 418 439 417 439 0.97 13 22 0.037 0.52 11.0 0.8 2 23 453 474 452 474 0.97 14 22 2.4e-05 0.00034 21.0 0.2 2 23 480 501 479 501 0.97 15 22 0.00017 0.0024 18.4 1.1 2 23 507 528 506 528 0.97 16 22 0.031 0.44 11.2 3.1 2 23 534 555 533 555 0.96 17 22 0.00086 0.012 16.1 1.5 2 23 561 582 560 582 0.97 18 22 0.012 0.18 12.5 2.2 2 23 588 609 587 609 0.97 19 22 0.0073 0.1 13.2 0.6 2 23 615 636 614 636 0.97 20 22 0.1 1.4 9.6 0.9 2 23 642 663 641 663 0.97 21 22 1.8e-05 0.00026 21.4 1.2 2 23 669 690 668 690 0.97 22 22 2e-05 0.00028 21.3 2.4 2 23 696 717 695 717 0.97
Sequence Information
- Coding Sequence
- ATGGATGTCGATTGCAATGAAAGTTGTtcaataaaatcagaagtaactctaacagaaacattttctttttgtggagaaTACAGAGGGTATGAgactaaaaaattcaaatttgagcCAGTTGATGtcgaagaatcttttaaatgcaaGGAAGAAGACAACCCTGCAAAGCATATGGATAGATCTGCCGATCTTGTACAGCAATATACTTGTAATGATTGTAACTTTACAACAACACAGAAGGATTGTCTAATGAAACATCTGACAAGTACTAAAAACATTCGACATTTGGGTAAAGAAAGCGACTTTAAAATGTCGTTGGAATGTTCTATaaatgaacatttaagaattcatCATGGGGTAGataataaatgtgattttaaaatacCCCAAATTATGTCTATATCACAACAATTGAAAACTGTCGAAAGTGGTGATTACTATATTTGTAATCAATGTGGTTTTAAAACACAATGGAAACATAAACtaaaagtacatataaataatcataaagGTAATAGGTATAattgtaaggaatgtaattttaaaacggtGTGGAAATCTAATCTTTACACGCATATGAAATTTCACACAGGTGACaaattgaagtgtaaagaatgtgactatagaACTGTGTGGAAATCTAATCTCAacacacatatgaaaattcatgcaggtgatgAATTgatgtgtaaggaatgtgactacaaaactccttGGAGACATTTATTAAAAGACCATATGACAatccatacaggtgataaattgaaatgtaaagaatgtgactacaaaactcctaGGAAATATGATCTTATCACACATATGAGAaatcatactggtgatgaattgaaatgtaaggaatgtgactacaaaacttcTTGGAAATGGTCATTAAAAGagcatatgagaattcatacaggtgatgaattgaaatgtaaagaatgtaactacAAAACTCCTTGGACACAGTCATTAAAAAaccatatgagaattcatataggtgataaattgaaatgtaaagaatgtgactacgaAACTCCTAGGAAATATGATCTTATTgcacatatgagaattcatacaggtgatgaattgaaatgtaaagaatgtaactacAAAACTCCTTGGACACAGTCATTAAAAAaccatatgagaattcatataggtgataaattgaaatgtaaagaatgtgactacgaAACTCCTAGGAAATATGATCTTATTgcacatatgagaattcatacaggtgatgaattgaaatgcagagaatgtgactacaaaactcctaGGAAATATGATCTTAGCacacatatgagaattcatacaggtgatgaattgaaatgtaaagaatgcgaagaattgaaatgtaaagaatgtgactacaaaactccttGGACACAGTCATTAAAAAaccatatgagaattcatataGGTcataaattgaaatgtaaagaatgtgactacgaAACTCCTAGGAAATATGATCTTATTgcacatatgagaattcatacaggtgatgaattgaaatgcagagaatgtgactacaaaactcctaGGAAATATGATCTTAGCacacatatgagaattcatacaggtgatgaattgaaatgtaaagaatgtgagtaCAAAACTCTTaggaaacatttattaaaaatccatatgagaattcatacaggtgatggattgaaatgtaaggaatgtgagtataaaactgtacagaaaCAAGATCTTAAAAAACATCTGGAAactcacacaggtgatgaattgaagtgtaaggaatgtgactacaaaactccttggaaacatttattgaaaaaccatatgagaattcataaaAGTGATGGATtgaaatgtaaggaatgtgactacaaaacttcTTGGAAATGGTTACTAAGAGaccatatgagaattcatacaggcgaagaattgaaatgtaaagaatgtgacttcAAAACTCCTTGGACACAGTCATTAAAAAaccatatgagaattcatataGGTCatgaattgaaatgtaaagaatgtgactacaaaactcctaGGAAATATGATCTTAACAcgcatatgagaattcatacaggtgatgaattgaaatgtaaagaatgtgattacaaaactcctaggaaatatcaattaaaacaacatatgagaagtcatacaggtgatgaactGAAGTga
- Protein Sequence
- MDVDCNESCSIKSEVTLTETFSFCGEYRGYETKKFKFEPVDVEESFKCKEEDNPAKHMDRSADLVQQYTCNDCNFTTTQKDCLMKHLTSTKNIRHLGKESDFKMSLECSINEHLRIHHGVDNKCDFKIPQIMSISQQLKTVESGDYYICNQCGFKTQWKHKLKVHINNHKGNRYNCKECNFKTVWKSNLYTHMKFHTGDKLKCKECDYRTVWKSNLNTHMKIHAGDELMCKECDYKTPWRHLLKDHMTIHTGDKLKCKECDYKTPRKYDLITHMRNHTGDELKCKECDYKTSWKWSLKEHMRIHTGDELKCKECNYKTPWTQSLKNHMRIHIGDKLKCKECDYETPRKYDLIAHMRIHTGDELKCKECNYKTPWTQSLKNHMRIHIGDKLKCKECDYETPRKYDLIAHMRIHTGDELKCRECDYKTPRKYDLSTHMRIHTGDELKCKECEELKCKECDYKTPWTQSLKNHMRIHIGHKLKCKECDYETPRKYDLIAHMRIHTGDELKCRECDYKTPRKYDLSTHMRIHTGDELKCKECEYKTLRKHLLKIHMRIHTGDGLKCKECEYKTVQKQDLKKHLETHTGDELKCKECDYKTPWKHLLKNHMRIHKSDGLKCKECDYKTSWKWLLRDHMRIHTGEELKCKECDFKTPWTQSLKNHMRIHIGHELKCKECDYKTPRKYDLNTHMRIHTGDELKCKECDYKTPRKYQLKQHMRSHTGDELK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -