Lyun007077.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:2183362-2191330[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.065 0.92 10.2 0.0 1 21 67 87 67 88 0.96
2 30 0.0061 0.087 13.4 1.8 2 23 167 188 166 188 0.98
3 30 1.6 22 5.9 0.7 1 20 193 212 193 214 0.89
4 30 0.63 8.9 7.1 0.7 1 23 232 254 232 254 0.97
5 30 0.027 0.38 11.4 4.7 1 23 259 281 259 281 0.99
6 30 0.00095 0.013 16.0 2.1 1 23 286 308 286 308 0.99
7 30 0.19 2.6 8.8 2.9 1 23 313 335 313 335 0.98
8 30 0.062 0.87 10.3 0.7 1 23 340 362 340 362 0.98
9 30 0.0018 0.026 15.1 1.5 1 23 367 389 367 389 0.99
10 30 0.00012 0.0016 18.9 2.2 1 23 394 416 394 416 0.99
11 30 0.0031 0.045 14.4 2.4 1 23 421 443 421 443 0.99
12 30 0.12 1.7 9.4 2.6 1 23 448 470 448 470 0.99
13 30 8.7e-05 0.0012 19.3 3.7 1 23 475 497 475 497 0.98
14 30 0.0056 0.08 13.6 1.5 1 23 502 524 502 524 0.98
15 30 0.12 1.7 9.4 0.0 1 21 600 620 600 621 0.95
16 30 1.2 17 6.2 1.2 1 23 703 725 703 725 0.96
17 30 0.5 7 7.4 2.5 1 23 730 752 730 752 0.98
18 30 2.8 40 5.1 1.1 1 23 757 779 757 779 0.89
19 30 0.00023 0.0033 17.9 3.1 1 23 784 806 784 806 0.99
20 30 0.13 1.8 9.3 2.1 1 23 811 833 811 833 0.98
21 30 2.1e-05 0.0003 21.2 1.9 1 23 838 860 838 860 0.98
22 30 0.5 7.1 7.4 1.0 1 23 865 887 865 887 0.97
23 30 0.083 1.2 9.9 1.1 1 23 892 914 892 914 0.99
24 30 0.014 0.2 12.3 1.0 1 23 919 941 919 941 0.99
25 30 0.00016 0.0023 18.4 3.8 1 23 946 968 946 968 0.99
26 30 0.057 0.8 10.4 0.9 1 23 973 995 973 995 0.98
27 30 0.00013 0.0019 18.7 4.0 1 23 1000 1022 1000 1022 0.99
28 30 0.00085 0.012 16.1 4.8 1 23 1027 1049 1027 1049 0.99
29 30 0.0073 0.1 13.2 5.5 1 23 1054 1076 1054 1076 0.99
30 30 0.00096 0.014 16.0 2.5 1 23 1081 1103 1081 1103 0.98

Sequence Information

Coding Sequence
ATGGACGCCCTATATAATGAAAGTTACccaataaaatcagaagtgattgtaaatgaaacattttcctaTTGTGGAAAATATGGAGATTACGGGAATGAACAATTGAAAACGGAACCGGTAGATTTCGAAGAATCCTTTAAATGCAAAGTAGAAGATAATCTGGAAGCGCACACCTCCCAAAGTATACCCATCCATCAATATGTTTGTaacgaatgtaattttattgcaaCCGAGAAAGATTCTTTAAtagaacatatgaaaattaccaagaatgaatatttttgcaacgaatgtaactttacaactCGGTTAGAATGTTATATAAAACAGCATTTCAAGATTCATAACAGTGTTGGTTGTAAACAGATCACTAAACAACATAACTCTAAGACGACGCAAATTTCAGCACCACATTTGAAAACTCCAAAAAGTGGTGACGAATATGATTACAAAACTTCGCAGAAATGGAGTATAAAGAAACAGGAGAAAATTCAATcaaagtgtaaggaatgtgattataaaacaatatcgaAACGTAGGCTAAcagaacatatgaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacagtgtggaaacaaaGTCTAATACAGCATGagaaattcatactggtgatgaatataagtGAACATGTGAATATTCATACTAATGGtgaatatgagtgtaaagaatgtgattataaaacagcatggaaacGGAGtataaaggaacatgtgaaaactcatactggtgatgaatataaatgtaaggaatgttattataaaacaatatcgaAACACAGACTAACAgaacacatgaaaattcatactggtgataaatataagtgtaaggaatgtgattataaaacaatatcgaAACGTAGGCTAAcagaacatatgaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatatggaaacataGTCTAACACAGCACgagaaaattcacactggtgatgaatataagtgtaaggaatgtgattataaaacaatatggaaacaggATCTAAgagaacatgtaaaaattcatactggtgatcaatataagtgtaaggaatgtgattacaaaacaatacGAAAACAAAGGTTAAtggaacatataaaaattcatagtagacatcaatataagtgtaagaaatgtgattacaaaacagtacagaaaaaaaatttagtgcaacacataaaaattcatattgatGATctatataagtgtaaggaatgtgattataaaacaatatcgaAACATAGACTAATAGAACACataaaaattcacactggtgatgaatataaatgtaatgaatgtgattataaaacaatatggaaacataGACTAACAgaacacatgaaaattcatactggtgatgaatataactgtaaggtgtgtgattataaaacaatacgaaAACATAATCTGATGCGacacatgaaaattcatactggtaatgaatataagtgtagggaatgtgattataaaacaatacgaaAACAAATGTTAATGGAACATCTAAAACTTCATAGcagtgacaaatataagttttgtatAATGGACGCCATATATAATGAAAGTTACccaataaaatcagaagtggTTGTACACcaaacattttcttattgtgaaaaatttgaagATTATGGGaatgaagaattgaaaacaGAACCGGTAGATTttgaagaatcttttaaatgcaaaaaagaAGATAATCTTGAAGAGCACACCTCACAAAGTATACCCGTCCATCAATATATTTGTaacgaatgtaattttattgcaaCGGAGAaagattctctaatagaacatatgaaaattactaataatgaatatttttgcaaggaatgtaactttacaacccTGTTAGAATGTTCTATAAAGCAGCATTTCAAGATTCATAGCAGGGTTGGTTGTAAACAGATCACTGAAAAACGTAACTGTAAGATGTCACAAATTTTAGCACCATGTTTGAAAATTCCAAAAAGTGGTGccgaatgtgattacaaaacaccgCAAAAATGGTGTACGAAGATACATAagagaattcatactggtgatcaatataagtgtaatgagtgtgattttaaaacaatgtggaaacagagtctaaaggaacatgagaaaattcatactgatggtGAACACAAGTGTAtggattgtgattataaaacagcatggaaacggagtctaaaggaacatgtgaaaactCATATTGATGGAGAATATAAGtgcaatgaatgtgattataaaacattatggaaacggagtctaaaggaacatgtgaaaattcatactgatgatgaatataagtgtaacgagtgtgattataaaacaatacacaaaaaaaatctattgcaacacataaaaattcatattggtgatcaatataagtgtaaggaatgtaattataaaacaatatggaaacatgatctaaaagaacatgtaaaTGTTCATACTGGTGaccaatataagtgtaatgagtgtgattataaaacctcAAGGAAAAGTAGTTTAACCATGCATATGACAATTCATagtggtaatgaatataagtgtaccgagtgtgattttaaaacaatatggaaacagagtctaaaggaacatgagaaaattcatactgatggtGAATACAAGTGTAtggattgtgattataaaacagcatggaaacgaagtctaaaagaacatgtaaaAACTCATATTGATggagaatataagtgtaaagaatgtgattataaaacaggaTGGAAAGTGAatctaaaaatacatataaaacgTCATACTgatgatgagtataagtgtaaagaatgtgattataaaactgtacggaaacATAGTTTAACAcaacacattaaaattcatactggtgatgaatataaatgcaacgaatgtgattataaaacaatatggaaacggagtctaaaggaacatgtgaaaattcatactgatgatgaatataagtgtaaggagtgtgattataaaacaacacacaaaaaaaatctagtgcaacacataaaaattcatactggtgatctgtataagtgcaaggaatgtgattataaaacaatccGAAAAAATTGTCTGACAcaacacatgaaaattcatactggtgatgaatataagtgtactaagtgtaattataaaacaatccGAAAAAATTGTCTGacacaacacataaaaattcataccggtgataaatataagtgtaagaaatgtgattttaaaacaatacgaaaacaaaatttagtgcaacACATAAAACTTCATAGTAACTTCGaagtagagaaaaaaatgcACACGTACTTGTAA
Protein Sequence
MDALYNESYPIKSEVIVNETFSYCGKYGDYGNEQLKTEPVDFEESFKCKVEDNLEAHTSQSIPIHQYVCNECNFIATEKDSLIEHMKITKNEYFCNECNFTTRLECYIKQHFKIHNSVGCKQITKQHNSKTTQISAPHLKTPKSGDEYDYKTSQKWSIKKQEKIQSKCKECDYKTISKRRLTEHMKIHTGDEYKCKECDYKTVWKQSLIQHEKFILVMNISEHVNIHTNGEYECKECDYKTAWKRSIKEHVKTHTGDEYKCKECYYKTISKHRLTEHMKIHTGDKYKCKECDYKTISKRRLTEHMKIHTGDEYKCKECDYKTIWKHSLTQHEKIHTGDEYKCKECDYKTIWKQDLREHVKIHTGDQYKCKECDYKTIRKQRLMEHIKIHSRHQYKCKKCDYKTVQKKNLVQHIKIHIDDLYKCKECDYKTISKHRLIEHIKIHTGDEYKCNECDYKTIWKHRLTEHMKIHTGDEYNCKVCDYKTIRKHNLMRHMKIHTGNEYKCRECDYKTIRKQMLMEHLKLHSSDKYKFCIMDAIYNESYPIKSEVVVHQTFSYCEKFEDYGNEELKTEPVDFEESFKCKKEDNLEEHTSQSIPVHQYICNECNFIATEKDSLIEHMKITNNEYFCKECNFTTLLECSIKQHFKIHSRVGCKQITEKRNCKMSQILAPCLKIPKSGAECDYKTPQKWCTKIHKRIHTGDQYKCNECDFKTMWKQSLKEHEKIHTDGEHKCMDCDYKTAWKRSLKEHVKTHIDGEYKCNECDYKTLWKRSLKEHVKIHTDDEYKCNECDYKTIHKKNLLQHIKIHIGDQYKCKECNYKTIWKHDLKEHVNVHTGDQYKCNECDYKTSRKSSLTMHMTIHSGNEYKCTECDFKTIWKQSLKEHEKIHTDGEYKCMDCDYKTAWKRSLKEHVKTHIDGEYKCKECDYKTGWKVNLKIHIKRHTDDEYKCKECDYKTVRKHSLTQHIKIHTGDEYKCNECDYKTIWKRSLKEHVKIHTDDEYKCKECDYKTTHKKNLVQHIKIHTGDLYKCKECDYKTIRKNCLTQHMKIHTGDEYKCTKCNYKTIRKNCLTQHIKIHTGDKYKCKKCDFKTIRKQNLVQHIKLHSNFEVEKKMHTYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-