Lyun001677.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000224.1:5593029-5617850[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.38 5.4 7.8 0.9 1 23 96 118 96 118 0.98
2 25 0.028 0.39 11.4 0.9 1 23 150 172 150 172 0.98
3 25 0.0035 0.049 14.2 2.3 1 23 177 199 177 199 0.98
4 25 0.08 1.1 9.9 2.5 1 23 204 226 204 226 0.98
5 25 0.00024 0.0034 17.9 1.0 1 23 231 253 231 253 0.99
6 25 7.5e-05 0.0011 19.5 2.0 1 23 258 280 258 280 0.98
7 25 0.014 0.19 12.3 0.6 1 23 285 307 285 307 0.98
8 25 4.2e-05 0.0006 20.2 1.1 1 23 312 334 312 334 0.98
9 25 0.0041 0.057 14.0 2.0 1 23 339 361 339 361 0.98
10 25 0.034 0.48 11.1 1.5 1 23 366 388 366 388 0.98
11 25 0.002 0.028 15.0 2.0 1 23 393 415 393 415 0.99
12 25 0.037 0.53 11.0 1.4 1 23 420 442 420 442 0.98
13 25 0.42 6 7.7 0.2 1 20 603 622 603 624 0.93
14 25 0.053 0.75 10.5 0.8 1 21 657 677 657 678 0.95
15 25 0.084 1.2 9.9 0.8 1 23 684 706 684 706 0.98
16 25 0.022 0.32 11.7 0.8 1 23 711 733 711 733 0.98
17 25 0.00011 0.0015 19.0 1.5 1 23 738 760 738 760 0.99
18 25 0.00019 0.0027 18.2 1.5 1 23 765 787 765 787 0.99
19 25 0.00028 0.004 17.6 1.5 1 23 792 814 792 814 0.99
20 25 0.21 3 8.6 1.3 1 23 819 841 819 841 0.98
21 25 0.00092 0.013 16.0 1.5 1 23 846 868 846 868 0.99
22 25 0.0058 0.082 13.5 0.9 1 23 873 895 873 895 0.98
23 25 0.78 11 6.8 0.7 1 23 900 922 900 922 0.95
24 25 0.0078 0.11 13.1 0.9 1 23 927 949 927 949 0.98
25 25 0.00024 0.0035 17.8 3.2 1 23 954 976 954 976 0.98

Sequence Information

Coding Sequence
ATGAATATTCACTCGGTAgactttattgaaagttgtgctataaaatcagaagtgattttaacagaaacattttctttttgtgacgAAGATTGTGCGAGTAAGGAACTGAAACCGGAGCCAGTAGACTACGAAGAATTGCTTCaatgtaaagaagaaaatgatctaGCAGAACCCATAGATTCACATGCTACTCCGATGCAAAGAGATGTTTGTAACGACTATAATTTTATAACGATTGGAGACAATTTCCAAATAGATCTTGTGAAAGCTGCTAAAAGCATTAAATACTCTTGTAAGGATTGTAACTTTACATCCGAATTagaattttctataaaagaGCATATGAAGATTCACAATGATGGATGtaatattgaagaatgtaattttaagatgcCACAGATTTTCTCTCTATCACCACAGTTGAATGTTCCAACAATTGATAATGAAtatgtttgtaatgaatgtaattacaccacattgaacgaaaattatttaaagagacATGTGAAGATTCATAAAAGTGCTAGATATACTTGCGagaaatgttattataaaacagcggggaaaagtaatctaaagcaacattacaaaattcatactggtgagaAATATAcatgtaaagagtgtgattataaaacggtatggaaacgtcatctaaaggaacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaaacagtacagaaaattaatctaatgcaacatgtcaaaattcatactggtgacaaatatacgtgtaaagaatgtgattatagatCAATAtcgaaaagtaatctaaaacaacataccaaaattcatacaggtgacgaatataagtgtaaagattgtgattataaaacagtatggaaaggacaactaaaggaacatgtcaaaattcatacaggtgaagaatataggtgtaacgaatgtgattataaatcagtacggaaaagtaatctaatgcaacatgtcaaaattcatagcGGTGataaatttaagtgtaaagattgtgattataaaacaatgcaGAAAAGATATCTAatggaacatgtaaaaattcatacaggtgatgaatataggtgtaacgagtgtgattataaaactgtatggaaaaataatctaacgAAACAttccaaaattcatacaggtgatgaatataagtgtagagaatgtgaatataaaacaacgCAGAAAAGATATTTAAtggaacatataaaaattcatacaggtgatgaatataggtgtgacgagtgtgattataaaactgtatggaaaaataatctaaagaaacattccaaaattcatacaggtaataaagtTTTGTCTGAAACAATGGATATGGACTCGGTAAACTTGACTGAAAGTTGTGCtataaaatctgaagtgattttagcagaaacattttccttttgtgGGATATACGAAGattGTGGGAGTAAGGAACTGAAACTGGAGTCAGTAGATTACGAAGAATCGCTTCAACCTAAAGAGGAAAATGATCTAGTAGAACCCATAGATACACATGCTACTCGTGTGCACAGAGATTTTTGTAATGACTATAATTTTACAACAATTGGAGAAAATTCTCTAGTAGAACATTTGAAAGCCCCTAAAAGTGTTAAATACTCTTGTAAGGAATGCGCCTTTACAACCCAGTTAGAATTCTCTATAAAAGAGCATATGAGCATTCACAATGATGgatataatattgaagaatgtaattttaagatgcCACAGCTTTTCTCTCTATCACCACAGTTGAACATTCCAAAAACTGGGAATGAAtatgtttgtaatgaatgtaattacaccacattgaatgaaaattatttaaagagacATGTGGAGATTAACAAAAATGCTGCATACAGTTGCAAGAAATGTGATTGTAATACACAGTGGAAAGATCACTTCATAGCACATGCTAAACTTCATTTGGACaatcaatataagtgtaaagaatgtgattataaatcagtaCTGAAAAgaagtctaaaggaacataccAAAATTGATACatgtgatgaatataagtgtaaagagtgtgattataaaactgtatggaaaaatagtctaaaggaacatgccaaaattcatactggtgacaaatataagtgtaaagagtgtgattataaaacggtatggaaaagtcAGCTAAAGGgccatgtcaaaattcatactggtgatgaatacaaatgtaaagaatgcgattataaatcAGTACGGAAAAGTagtctaatgcaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgcaattataaaacggTACGGAAAGGccaactaaaggaacatgtcaaaattcataccggtgataaatataagtgtaaagaatgtgattataaaacagtgcagaaaaGATATCTAAtggaacatataaaaattcatacaggtgatgaatataggtGCAacgagtgtgattataaaactgtatggaaaaatagtctaaaggaacatttcaaaatacatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtgcagaaaaGATATCTAatggaacatgttaaaattcatacaggtgatgaatataggtgcaaagaatgtgattataaatcagtatggaaaagtaatctaacgcaacatgtaaaaattcatacaggtgataagtATAGGTGTaaggagtgtgattataaaactgtatgggaaaatagtctaaaggaacattccaaaattcatacaggtgatgaatataaatgtaaagagtgcgattataaaacggtatggaaaagtcAGCTAAGGgaccatgtcaaaattcatactggtgataaatataagtgtaaagaatgtgattttaaaactgtacggaaaagtcatctaaaggaacatgtcaacaTTCATAAAGGCtacaaatacaagtgtaaatag
Protein Sequence
MNIHSVDFIESCAIKSEVILTETFSFCDEDCASKELKPEPVDYEELLQCKEENDLAEPIDSHATPMQRDVCNDYNFITIGDNFQIDLVKAAKSIKYSCKDCNFTSELEFSIKEHMKIHNDGCNIEECNFKMPQIFSLSPQLNVPTIDNEYVCNECNYTTLNENYLKRHVKIHKSARYTCEKCYYKTAGKSNLKQHYKIHTGEKYTCKECDYKTVWKRHLKEHVKIHTGDEYKCKECDYKTVQKINLMQHVKIHTGDKYTCKECDYRSISKSNLKQHTKIHTGDEYKCKDCDYKTVWKGQLKEHVKIHTGEEYRCNECDYKSVRKSNLMQHVKIHSGDKFKCKDCDYKTMQKRYLMEHVKIHTGDEYRCNECDYKTVWKNNLTKHSKIHTGDEYKCRECEYKTTQKRYLMEHIKIHTGDEYRCDECDYKTVWKNNLKKHSKIHTGNKVLSETMDMDSVNLTESCAIKSEVILAETFSFCGIYEDCGSKELKLESVDYEESLQPKEENDLVEPIDTHATRVHRDFCNDYNFTTIGENSLVEHLKAPKSVKYSCKECAFTTQLEFSIKEHMSIHNDGYNIEECNFKMPQLFSLSPQLNIPKTGNEYVCNECNYTTLNENYLKRHVEINKNAAYSCKKCDCNTQWKDHFIAHAKLHLDNQYKCKECDYKSVLKRSLKEHTKIDTCDEYKCKECDYKTVWKNSLKEHAKIHTGDKYKCKECDYKTVWKSQLKGHVKIHTGDEYKCKECDYKSVRKSSLMQHVKIHTGDEYKCKECNYKTVRKGQLKEHVKIHTGDKYKCKECDYKTVQKRYLMEHIKIHTGDEYRCNECDYKTVWKNSLKEHFKIHTGDEYKCKECDYKTVQKRYLMEHVKIHTGDEYRCKECDYKSVWKSNLTQHVKIHTGDKYRCKECDYKTVWENSLKEHSKIHTGDEYKCKECDYKTVWKSQLRDHVKIHTGDKYKCKECDFKTVRKSHLKEHVNIHKGYKYKCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-