Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001223.1:5482397-5484997[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 3.1 44 4.9 6.1 1 23 65 87 65 87 0.98

2 27 0.41 5.8 7.7 1.0 2 23 93 114 92 114 0.97

3 27 3.1e-05 0.00043 20.7 0.6 1 23 119 141 119 141 0.99

4 27 2.9 42 5.0 8.0 1 23 146 168 146 168 0.99

5 27 0.042 0.59 10.8 1.8 1 23 173 195 173 195 0.98

6 27 0.0025 0.035 14.7 3.0 1 23 200 222 200 222 0.98

7 27 0.0019 0.027 15.0 0.6 1 23 227 249 227 249 0.99

8 27 1.7 24 5.8 1.4 1 23 254 276 254 276 0.98

9 27 0.00016 0.0022 18.4 3.1 1 23 281 303 281 303 0.99

10 27 0.14 2 9.1 2.0 1 23 308 330 308 330 0.99

11 27 7.6e-06 0.00011 22.6 3.1 1 23 335 357 335 357 0.99

12 27 0.0025 0.035 14.7 3.0 1 23 389 411 389 411 0.98

13 27 0.0003 0.0043 17.5 0.9 1 23 416 438 416 438 0.98

14 27 1.7 24 5.8 1.4 1 23 443 465 443 465 0.98

15 27 0.00016 0.0022 18.4 3.1 1 23 470 492 470 492 0.99

16 27 0.14 2 9.1 2.0 1 23 497 519 497 519 0.99

17 27 2.2e-06 3.2e-05 24.3 1.2 1 23 524 546 524 546 0.99

18 27 3.5e-05 0.00049 20.5 1.6 1 23 578 600 578 600 0.99

19 27 0.024 0.34 11.6 2.0 1 23 605 627 605 627 0.99

20 27 0.00026 0.0036 17.8 1.4 1 23 632 654 632 654 0.99

21 27 1.8 26 5.6 1.5 1 23 659 681 659 681 0.92

22 27 4.1e-05 0.00057 20.3 1.3 1 23 686 708 686 708 0.99

23 27 0.47 6.6 7.5 1.5 1 23 713 735 713 735 0.97

24 27 0.0034 0.049 14.2 1.2 1 23 740 762 740 762 0.98

25 27 0.3 4.2 8.1 1.9 1 23 767 789 767 789 0.97

26 27 0.06 0.84 10.3 0.6 1 23 794 816 794 816 0.98

27 27 0.041 0.58 10.8 2.2 1 23 821 843 821 843 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	3.1	44	4.9	6.1	1	23	65	87	65	87	0.98
2	27	0.41	5.8	7.7	1.0	2	23	93	114	92	114	0.97
3	27	3.1e-05	0.00043	20.7	0.6	1	23	119	141	119	141	0.99
4	27	2.9	42	5.0	8.0	1	23	146	168	146	168	0.99
5	27	0.042	0.59	10.8	1.8	1	23	173	195	173	195	0.98
6	27	0.0025	0.035	14.7	3.0	1	23	200	222	200	222	0.98
7	27	0.0019	0.027	15.0	0.6	1	23	227	249	227	249	0.99
8	27	1.7	24	5.8	1.4	1	23	254	276	254	276	0.98
9	27	0.00016	0.0022	18.4	3.1	1	23	281	303	281	303	0.99
10	27	0.14	2	9.1	2.0	1	23	308	330	308	330	0.99
11	27	7.6e-06	0.00011	22.6	3.1	1	23	335	357	335	357	0.99
12	27	0.0025	0.035	14.7	3.0	1	23	389	411	389	411	0.98
13	27	0.0003	0.0043	17.5	0.9	1	23	416	438	416	438	0.98
14	27	1.7	24	5.8	1.4	1	23	443	465	443	465	0.98
15	27	0.00016	0.0022	18.4	3.1	1	23	470	492	470	492	0.99
16	27	0.14	2	9.1	2.0	1	23	497	519	497	519	0.99
17	27	2.2e-06	3.2e-05	24.3	1.2	1	23	524	546	524	546	0.99
18	27	3.5e-05	0.00049	20.5	1.6	1	23	578	600	578	600	0.99
19	27	0.024	0.34	11.6	2.0	1	23	605	627	605	627	0.99
20	27	0.00026	0.0036	17.8	1.4	1	23	632	654	632	654	0.99
21	27	1.8	26	5.6	1.5	1	23	659	681	659	681	0.92
22	27	4.1e-05	0.00057	20.3	1.3	1	23	686	708	686	708	0.99
23	27	0.47	6.6	7.5	1.5	1	23	713	735	713	735	0.97
24	27	0.0034	0.049	14.2	1.2	1	23	740	762	740	762	0.98
25	27	0.3	4.2	8.1	1.9	1	23	767	789	767	789	0.97
26	27	0.06	0.84	10.3	0.6	1	23	794	816	794	816	0.98
27	27	0.041	0.58	10.8	2.2	1	23	821	843	821	843	0.98

Sequence Information

Coding Sequence: ATGGATGTCGattgtaatgaaagttatccgATAAGAAAGGAAATAAAACAGGAAGTAGTTGTAAATGAAACATTCTCCTTTAgtggaaaatatgaagattatggAAGTGAAGAATTGCCGGCAAATTTTGGAGCAGCTTTTAAACAGGAAAGAGATATGGATATGGAGCACACCAATACATCCAAATatgaatatatttgtaatgaatgtagtTATAAAACAACGTGTAAACATAGTCTAAAGGACCATGCAAAAACTCATACtagtaatgaaaataaatgtaaagaatgtgactacaaaactccaTGGAAGCAGAGTTTTaaggaacatataaaaattcatactggtgatgaatataaatgtaatgaatgcaaCTATAAAGCAGTAAAGAAAGATAATCTTAAAGCACACATCAGAAtacatactggtgatgaatttcaatgtaataaatgtaattataagaCAAGGTGGAAACATTGTCTGAAGGACCATGTGAAAACTCATACtagtaatgaatataagtgtaaggaatgtgactacaaaacaccatggaagcagaattttaaaaatcatgtaaaaattcatactggtgatgagtataaatgtaatgaatgttgCTATAAAACAGTAAGGAAAGATCAACTTAAAGCAcacatcagaatccatactggtgatgaatataaatgtaatgaatgcaaCTATAAAGCAGTAAAGAAAGATCGACTTAACGCACACATCAAAATCCATACTGGCGATGAATATATGTGTAAGCAATGTGagtacaaaacaccatggaaccAGAGTTTTAAGCTACATATAAAAATGCATACTGGTGATGgctataaatgtaatgaatgttactttaaaacagtgagaaaagatcatcttaaagcacacatcagaattcatactggtgatgaatataagtgtaaagaatgtgagtacaaaacaccatggaagaaGAGTTTTaaggaacatataaaaatgcatactggtgatgactataaatgtaatgaatgtgactttaaaacagtgagaaaagaTCATCTTAAAGCACACATTAGAACCCACAGGGGCGATGTATATAAGTGTatggaatgtgactacaaaacaccatggaaacagatTTTTAaggtacatataaaaattcatactggtgatgagtataaatgtaatgaatgttgCTATAAAACAGTAAGGAAAGATCAACTTAAAGCAcacatcagaatccatactggtgatgaatttaaatgtaatgaatgtgactttaaaacagtgaggaaagatCGACTTAACGCACACATCAAAATCCATACTGGCGATGAATATATGTGTAAGCAATGTGagtacaaaacaccatggaaccAGAGTTTTAAGCTACATATAAAAATGCATACTGGTGATGgctataaatgtaatgaatgttactttaaaacagtgagaaaagatcatcttaaagcacacatcagaattcatactggtgatgaatataagtgtaaagaatgtgagtacaaaacaccatggaagaaGAGTTTTaaggaacatataaaaatgcatactggtgatgactataaatgtaatgaatgtgactataaaacagtcaGAAAAGAACAACTTAAAGCACACATTAGAACCCACAGGGGCGATGTATATAAGTGTatggaatgtgactacaaaacaccatggaaacagatTTTTAAGGTACATATAAAAATGCATACTGGTGATGactataaatgtaatgaatgtgactataaaacagtgagaaaatATCTACTTAAAGCACACACCagaattcatactggcgatgaatataagtgtaaggaatgtaactacaaaacaccatggaagcagaATTTTAAGGTACATATAAAAATGCATACTGGTGATGactataaatgtaatgaatgtgactataaaacagtgaaaaAGAATCTACTTAAAGCACACAccagaatccatactggtgatgaatataagtgtaacgaatgtgactacaaaacaccatggcaGGGGTGTTTTATGGGTCATATAAAACTGCATACTGGTGTTGactataaatgtaatgaatgtaactataaaacagtgagaaaagaTCTACTTAAAGCACACAccagaatccatactggtgatgaatataagtgtaagcaatgtgactacaaaacaccatggaagcagaGTTTTATGGAACATATAAAACTGCATACTGGTGATGgctataaatgtaatgaatgtaactttaaaacagtgaggaaaggTCGACTTAACGCACACTCTAGAATCCATAGTGGCGATGAgcataagtgtaatgaatgtgactacaaaacaccttGGAAGCAGAAATTAAAggtacatgtaaaaattcatacccgtgatgagtataaatgtaatgaatgtatcTTTAAAACAACGAGCGAAAATCAACTTAAAGCACATGCCAGAATCCATACTggcaatgaatataagtgtgaagaatgtgattttaaaacaatatggcaacatagtctaaagaaacatttaaatattcacagtggtaaaaaataa
Protein Sequence: MDVDCNESYPIRKEIKQEVVVNETFSFSGKYEDYGSEELPANFGAAFKQERDMDMEHTNTSKYEYICNECSYKTTCKHSLKDHAKTHTSNENKCKECDYKTPWKQSFKEHIKIHTGDEYKCNECNYKAVKKDNLKAHIRIHTGDEFQCNKCNYKTRWKHCLKDHVKTHTSNEYKCKECDYKTPWKQNFKNHVKIHTGDEYKCNECCYKTVRKDQLKAHIRIHTGDEYKCNECNYKAVKKDRLNAHIKIHTGDEYMCKQCEYKTPWNQSFKLHIKMHTGDGYKCNECYFKTVRKDHLKAHIRIHTGDEYKCKECEYKTPWKKSFKEHIKMHTGDDYKCNECDFKTVRKDHLKAHIRTHRGDVYKCMECDYKTPWKQIFKVHIKIHTGDEYKCNECCYKTVRKDQLKAHIRIHTGDEFKCNECDFKTVRKDRLNAHIKIHTGDEYMCKQCEYKTPWNQSFKLHIKMHTGDGYKCNECYFKTVRKDHLKAHIRIHTGDEYKCKECEYKTPWKKSFKEHIKMHTGDDYKCNECDYKTVRKEQLKAHIRTHRGDVYKCMECDYKTPWKQIFKVHIKMHTGDDYKCNECDYKTVRKYLLKAHTRIHTGDEYKCKECNYKTPWKQNFKVHIKMHTGDDYKCNECDYKTVKKNLLKAHTRIHTGDEYKCNECDYKTPWQGCFMGHIKLHTGVDYKCNECNYKTVRKDLLKAHTRIHTGDEYKCKQCDYKTPWKQSFMEHIKLHTGDGYKCNECNFKTVRKGRLNAHSRIHSGDEHKCNECDYKTPWKQKLKVHVKIHTRDEYKCNECIFKTTSENQLKAHARIHTGNEYKCEECDFKTIWQHSLKKHLNIHSGKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -