Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001223.1:11281810-11284467[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0061 0.086 13.5 2.5 1 23 139 161 139 161 0.98

2 27 0.071 1 10.1 1.0 1 23 166 188 166 188 0.98

3 27 0.012 0.17 12.5 1.2 1 23 193 215 193 215 0.98

4 27 0.046 0.66 10.7 2.1 1 23 220 242 220 242 0.98

5 27 5.1e-05 0.00073 20.0 1.5 1 23 247 269 247 269 0.99

6 27 0.01 0.14 12.7 2.5 1 23 274 296 274 296 0.98

7 27 0.00046 0.0065 17.0 2.4 1 23 301 323 301 323 0.99

8 27 0.059 0.83 10.4 1.6 1 23 328 350 328 350 0.98

9 27 0.021 0.3 11.8 0.4 1 23 355 377 355 377 0.98

10 27 7.1e-05 0.001 19.5 2.0 1 23 382 404 382 404 0.98

11 27 0.78 11 6.8 4.4 1 23 409 431 409 431 0.98

12 27 0.0055 0.078 13.6 4.3 1 23 436 458 436 458 0.98

13 27 0.21 2.9 8.6 3.9 1 23 463 485 463 485 0.98

14 27 0.26 3.6 8.3 2.1 1 23 490 512 490 512 0.97

15 27 0.00043 0.006 17.1 1.0 1 23 517 539 517 539 0.98

16 27 0.00014 0.002 18.6 2.5 1 23 544 566 544 566 0.98

17 27 0.005 0.071 13.7 2.7 1 23 571 593 571 593 0.98

18 27 1.6e-05 0.00022 21.6 1.6 1 23 598 620 598 620 0.99

19 27 0.78 11 6.8 4.4 1 23 625 647 625 647 0.98

20 27 0.0023 0.032 14.8 4.0 1 23 652 674 652 674 0.99

21 27 0.077 1.1 10.0 2.9 1 23 679 701 679 701 0.98

22 27 0.37 5.2 7.8 2.1 1 23 706 728 706 728 0.97

23 27 0.032 0.45 11.2 0.5 1 23 733 755 733 755 0.98

24 27 0.00014 0.002 18.6 2.5 1 23 760 782 760 782 0.98

25 27 0.005 0.071 13.7 2.7 1 23 787 809 787 809 0.98

26 27 0.15 2.1 9.1 0.5 1 23 814 836 814 836 0.97

27 27 0.15 2.1 9.1 0.2 1 23 841 863 841 863 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0061	0.086	13.5	2.5	1	23	139	161	139	161	0.98
2	27	0.071	1	10.1	1.0	1	23	166	188	166	188	0.98
3	27	0.012	0.17	12.5	1.2	1	23	193	215	193	215	0.98
4	27	0.046	0.66	10.7	2.1	1	23	220	242	220	242	0.98
5	27	5.1e-05	0.00073	20.0	1.5	1	23	247	269	247	269	0.99
6	27	0.01	0.14	12.7	2.5	1	23	274	296	274	296	0.98
7	27	0.00046	0.0065	17.0	2.4	1	23	301	323	301	323	0.99
8	27	0.059	0.83	10.4	1.6	1	23	328	350	328	350	0.98
9	27	0.021	0.3	11.8	0.4	1	23	355	377	355	377	0.98
10	27	7.1e-05	0.001	19.5	2.0	1	23	382	404	382	404	0.98
11	27	0.78	11	6.8	4.4	1	23	409	431	409	431	0.98
12	27	0.0055	0.078	13.6	4.3	1	23	436	458	436	458	0.98
13	27	0.21	2.9	8.6	3.9	1	23	463	485	463	485	0.98
14	27	0.26	3.6	8.3	2.1	1	23	490	512	490	512	0.97
15	27	0.00043	0.006	17.1	1.0	1	23	517	539	517	539	0.98
16	27	0.00014	0.002	18.6	2.5	1	23	544	566	544	566	0.98
17	27	0.005	0.071	13.7	2.7	1	23	571	593	571	593	0.98
18	27	1.6e-05	0.00022	21.6	1.6	1	23	598	620	598	620	0.99
19	27	0.78	11	6.8	4.4	1	23	625	647	625	647	0.98
20	27	0.0023	0.032	14.8	4.0	1	23	652	674	652	674	0.99
21	27	0.077	1.1	10.0	2.9	1	23	679	701	679	701	0.98
22	27	0.37	5.2	7.8	2.1	1	23	706	728	706	728	0.97
23	27	0.032	0.45	11.2	0.5	1	23	733	755	733	755	0.98
24	27	0.00014	0.002	18.6	2.5	1	23	760	782	760	782	0.98
25	27	0.005	0.071	13.7	2.7	1	23	787	809	787	809	0.98
26	27	0.15	2.1	9.1	0.5	1	23	814	836	814	836	0.97
27	27	0.15	2.1	9.1	0.2	1	23	841	863	841	863	0.98

Sequence Information

Coding Sequence: ATGGATATAGACTCAGTAGACTTTATTAAAAGTTGTGCcataaaatcagaagtgattttaaccgaaacattttctttcagTGGGAAGTACGAAGattGGGGGAGTAGGGAATTTAAACCGGAGCCACTGAATTATGAAGAATTGCTTAAacctaaagaagaaaatgatctgGCACAACCCATAGATACACATGCTGCTTCGATGCAACATGATTTTTGTAATGTctctaattttataacaattggaGAAAATTCTCTAATACAACCTTTGCAAGTTAGTAAAAGcgttaaatttactatgaaCGAGAATACGAGGATTTACAATGATGAATATAATATtggagaatgtaattttaaggtGCCACAGATTTTATCTCTATCACCGCAGTTCCAAACTCCAAGAAGTGGGAATGCATATGTTTGTAATCAATGTTTTTATACcacatttaacaaaaatgatctaaagaaacatgtgaaGATTCACAAAAGTGCTGCATATAGTTGCAAGATTTGTGAATACACTACACGTTGGAAAAGTTCCTTCACAGTACATGCAAAAATTCATTCGGGtaatgaatacaagtgtaaaaaatgtgattataaaacagtatggaaaagtgatctaatgcaacatgtcaaaattcataccggtgataaatttgagtgtaaagaatgtgattataaaacagtatggaaaaatcatctaaaggaacatcttaaaattcatacaggtgatgaatataagtgcaaaggatgtgattataaaacgatacGGAAAAGTCAGctgaaggaacatgtcaaaattcatacgggtgatgaatataagtgtaaagaatgtgattataagacggtatggaaaagtcatctaaaggaacatgtgaaaattcatactggtgacgaatataagtgcaaagaatgtgattataaaacagtacggataagtcatctaaaggaacatgtcaaaattcatgcaggtgacGAATATATGTGTAAACAGTGTAactataaaacggtatggaaaagtaGTCTGaagcaacatgttaaaattcatactggtgaccaatataagtgtaaagaatgtgattataaaagtgtatggaaaagtgatctagtgcaacatgtcaaaattcatacaggtgatgaatatgtGTGTAAACAGTGTAACTATAAAACGGTAcgaaaaagtaatctaaagcaacatgttaaaattcataccggtgacaaatataagtgtaaagaatgtgattttaaaacagtatgcaaaagtcgtctaaaggaacatcttaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagtacggaaaaactgtttaaaggaacatgtcaaacttcatacgggtgatgaatataagtgtaaagaatgtgattataaaactgtatggaaaaattgtctaaagaaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagtatggaaaaattctctaaaggaacatttcaaACTTCATActaatgatgaatataagtgtaaagaatgtgattttaaaactgtacggaaaagtgGTCTACtacaacatgtcaaaattcatacaggtgatgaatatatgtgtaaacagtgtaattataaaacggtacggaaaagtaatctaaagcaacatgttaaaattcatactggtgacaaatataagtgtaaagaatgtgattatgaaacagTACGGAAAAactgtctaaaggaacatgccaaaattcatacaggtgatgaatataagtgtacaggttgtgattataaaacagtacgaaaaagtaatctaaagcaacatgttaaaattcataccggtgacaaatataagtgtaaagaatgtgattttaaaacagtatgcaaaagtcgtctaaaggaacatcttaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagtacggaaaaactgtttaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaactatatggaAAGATTGCCTAaataaacatgtcaaaattcataaaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaattctctaaaggaacatttcaaACTTCATActaatgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtggTCTACtacaacatgtcaaaattcatacaggtgatgaatatatgtgtaaacagtgtaattataaaacggtacggaaaagtaatctaaagcaacatgttaaaattcatactggtgacaaatataagtgtaaagaatgtgattatgaaacagTACGGAAAAactgtctaaaggaacatgccaaaattcatacaggtgatgaatataagtgtacaggttgtgattataaaacagtatggaaaaatgctctaaaggaacatgtcaaacttcatacaagtgatgaatataagtgtaatgaatgtgattttaaaactgtatggGAAAGTGATCTAATgctacatgtcaaaattcatacaagtgtcTAG
Protein Sequence: MDIDSVDFIKSCAIKSEVILTETFSFSGKYEDWGSREFKPEPLNYEELLKPKEENDLAQPIDTHAASMQHDFCNVSNFITIGENSLIQPLQVSKSVKFTMNENTRIYNDEYNIGECNFKVPQILSLSPQFQTPRSGNAYVCNQCFYTTFNKNDLKKHVKIHKSAAYSCKICEYTTRWKSSFTVHAKIHSGNEYKCKKCDYKTVWKSDLMQHVKIHTGDKFECKECDYKTVWKNHLKEHLKIHTGDEYKCKGCDYKTIRKSQLKEHVKIHTGDEYKCKECDYKTVWKSHLKEHVKIHTGDEYKCKECDYKTVRISHLKEHVKIHAGDEYMCKQCNYKTVWKSSLKQHVKIHTGDQYKCKECDYKSVWKSDLVQHVKIHTGDEYVCKQCNYKTVRKSNLKQHVKIHTGDKYKCKECDFKTVCKSRLKEHLKIHTGDEYKCKDCDYKTVRKNCLKEHVKLHTGDEYKCKECDYKTVWKNCLKKHVKIHTGDEYKCKDCDYKTVWKNSLKEHFKLHTNDEYKCKECDFKTVRKSGLLQHVKIHTGDEYMCKQCNYKTVRKSNLKQHVKIHTGDKYKCKECDYETVRKNCLKEHAKIHTGDEYKCTGCDYKTVRKSNLKQHVKIHTGDKYKCKECDFKTVCKSRLKEHLKIHTGDEYKCKDCDYKTVRKNCLKEHVKIHTGEEYKCKECDYKTIWKDCLNKHVKIHKGDEYKCKECDYKTVWKNSLKEHFKLHTNDEYKCKECDYKTVWKSGLLQHVKIHTGDEYMCKQCNYKTVRKSNLKQHVKIHTGDKYKCKECDYETVRKNCLKEHAKIHTGDEYKCTGCDYKTVWKNALKEHVKLHTSDEYKCNECDFKTVWESDLMLHVKIHTSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -