Lyun009364.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001723.1:13433-17253[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.1 1.4 9.6 4.0 1 23 131 153 131 153 0.98
2 36 0.016 0.23 12.1 0.2 1 23 158 180 158 180 0.98
3 36 0.55 7.8 7.3 2.9 1 23 185 207 185 207 0.98
4 36 0.0054 0.076 13.6 3.6 1 23 212 234 212 234 0.99
5 36 0.082 1.2 9.9 0.8 1 23 239 261 239 261 0.98
6 36 0.0019 0.027 15.0 3.9 1 23 266 288 266 288 0.99
7 36 0.031 0.43 11.2 0.4 1 23 293 315 293 315 0.98
8 36 0.00056 0.0079 16.7 2.0 1 23 320 342 320 342 0.99
9 36 0.0044 0.062 13.9 3.9 1 23 347 369 347 369 0.99
10 36 0.099 1.4 9.6 0.4 1 23 374 396 374 396 0.98
11 36 0.012 0.17 12.5 4.6 1 23 401 423 401 423 0.99
12 36 0.0033 0.046 14.3 2.9 1 23 428 450 428 450 0.99
13 36 0.013 0.18 12.4 0.8 1 23 455 477 455 477 0.98
14 36 0.32 4.5 8.1 1.3 1 23 482 504 482 504 0.96
15 36 0.016 0.23 12.1 4.0 1 23 509 531 509 531 0.99
16 36 1.4 20 6.0 0.6 1 23 536 558 536 558 0.93
17 36 0.3 4.3 8.1 1.6 1 23 563 585 563 585 0.96
18 36 0.55 7.8 7.3 2.9 1 23 590 612 590 612 0.98
19 36 0.0054 0.076 13.6 3.6 1 23 617 639 617 639 0.99
20 36 0.082 1.2 9.9 0.8 1 23 644 666 644 666 0.98
21 36 0.0019 0.027 15.0 3.9 1 23 671 693 671 693 0.99
22 36 0.031 0.43 11.2 0.4 1 23 698 720 698 720 0.98
23 36 0.00056 0.0079 16.7 2.0 1 23 725 747 725 747 0.99
24 36 0.3 4.3 8.1 1.6 1 23 752 774 752 774 0.96
25 36 0.55 7.8 7.3 2.9 1 23 779 801 779 801 0.98
26 36 0.013 0.18 12.4 4.7 1 23 806 828 806 828 0.99
27 36 0.082 1.2 9.9 0.8 1 23 833 855 833 855 0.98
28 36 0.0092 0.13 12.9 3.5 1 23 860 882 860 882 0.98
29 36 0.0031 0.043 14.4 4.0 1 23 914 936 914 936 0.99
30 36 0.3 4.3 8.1 1.6 1 23 941 963 941 963 0.96
31 36 0.0046 0.065 13.8 4.0 1 23 968 990 968 990 0.99
32 36 0.0038 0.053 14.1 2.9 1 23 995 1017 995 1017 0.99
33 36 0.16 2.2 9.0 0.6 1 23 1022 1044 1022 1044 0.98
34 36 0.011 0.16 12.6 2.3 1 23 1049 1071 1049 1071 0.99
35 36 0.013 0.18 12.4 0.8 1 23 1076 1098 1076 1098 0.98
36 36 0.19 2.7 8.7 0.3 1 23 1103 1125 1103 1125 0.98

Sequence Information

Coding Sequence
ATGGATATCGACACGGTAgactttattgaaagttgtactataaaatcagaagtgatgTTAACAGGGACATTTTCTGTTTGTGGGAAATGCGAAGattGTGGGAATAAGGAACTGAAATTAGAGCCAGTAGAATCGCTTAAacctaaagaagaaaatgatttgGCAGAATCCATGGATACTTATGCTGCTCCGATGCAACGACATTTGTGTAATGACTCTAATGTTCTAACAGTCAGAGATAATTCTCTAATAGAACTTTTGAAAGTTACTAAAAGCGTTAAATACtcttgtaaggaatgtaactttacaactCGTTCCGAGAAATGTGATTATTATACACGAAGGAAAAGTCACATCACAGCACATTCTAAAATTCATTCAGAtaatgaatttaagtgtaaagaatgtgattataaaacggcatGGAAAACACATCTAAAGCAACAtaccaaaattcatacaggtgatgaatataagtgtggagaatgtggttataaaacaatatggaaaggaaatctaaaggaacacgtcaaaattcatacaggtgacgaatataagtgtaaagagtgtgattataaaacggtgtggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgcgattataaaacggtgcagaaaaattgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtatggaaaaatcttctaaaggaacatgttaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaactgtgcggAAAAATTGTCTagagaaacatgtcaaaattcatacaggagatgaatataagtgtgaagaatgtgattataaaacagtgtggaaaaatcttctaaaggaacatatcaaaattcatacaggtgaagaatataagtgtaaagaatgcgattataaaacggtgcggaaaaattatctaaaggaccatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattacaaaactgtgcggaaaaattgtctaaaggaacatgtcaaaattcatacaggagatgaatataagtgtgaagaatgtgattataaaacagtatggaaaaatcttctaaaggaacatgtaaaaatccatacaggtgacaaatataagtgtaagcaatgtgattataaaactgtgcggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattataaaactgtgcggaaaaattgtctaaaggaacatgtcaaaattcatacggaTGATAAATacaagtgcaaagaatgtgattttaaaactatatGGAAAAGTGCTCTAAcgcgacatgtcaaaattcatacaggttatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaatcttctaaagcaacataacaacattcatacaggtgaggaatataagtgtaacgaatgtgattataaaacgatgcggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtgaagaatgtgattataaaacattatggaaaagttatctaatacaacatgtcaaaattcatacaggtaatgaatataagtgtaaagaatgcgattataaaacagtatggaaaaatcttctaaagcaacataacaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtgtggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgcgattataaaacggtgcagaaaaattgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtatggaaaaatcttctaaaggaacatgttaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaactgtgcggAAAAATTGTCTagagaaacatgtcaaaattcatacaggagatgaatataagtgtgaagaatgtgattataaaacagtgtggaaaaatcttctaaaggaacatatcaaaattcatacaggtgaagaatataagtgtaaagaatgcgattataaaacggtgcggaaaaattatctaaaggaccatgtcaaaattcatacaggtaatgaatataagtgtaaagaatgcgattataaaacagtatggaaaaatcttctaaagcaacataacaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtgtggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaaaaatgcgattataaaacggtgcagaaaaattgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtatggaaaaatcttctaaaggaacatgtcaaaattcatacaggagaaaaatataattgtaaagattgtgattataaaacggtgcggaaaaattgtctaaaggaccatgtcaaaattcatacaggtgacaaatataagtgtgaagcatgtgattataaaacattatggaAAAGTTATCTAAcacaacatgtcaaaattcatacaggtgataaatataagtgtaaagactgtgattataaaacggtgcggaaaaattgtctaaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtatggaaaaatcttctaaagcaacataacaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacggtgcggaaaaattgtctaaaggaccatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaactgtgcggAAAAATTGTCTagaggaacatgtcaaaattcatacaggagatgaatataagtgtgaagaatgtaattataaaacagtatggaaaaatcttctaaaggaacatgtaaaaatccatacaggtgacaaatataagtgtaaacaatgtaattataaaacagtattgaAATATTctctaaaagaacatgtcaaaattcatacgggtgatgaatacaagtgcaaagaatgtgattttaaaactatatGGAAAAGTGCTCTAAcgcgacatgtcaaaattcataaaggtgatgaatataagtgtgaaaaatgtgattataaaacaatctgGAAAAGTGCTCTAATgggacatgtcaaaattcatactggtgattaa
Protein Sequence
MDIDTVDFIESCTIKSEVMLTGTFSVCGKCEDCGNKELKLEPVESLKPKEENDLAESMDTYAAPMQRHLCNDSNVLTVRDNSLIELLKVTKSVKYSCKECNFTTRSEKCDYYTRRKSHITAHSKIHSDNEFKCKECDYKTAWKTHLKQHTKIHTGDEYKCGECGYKTIWKGNLKEHVKIHTGDEYKCKECDYKTVWKNCLKEHVKIHTGEEYKCKECDYKTVQKNCLKEHVKIHTGEEYKCKECDYKTVWKNLLKEHVKIHTGEEYKCKECDYKTVRKNCLEKHVKIHTGDEYKCEECDYKTVWKNLLKEHIKIHTGEEYKCKECDYKTVRKNYLKDHVKIHTGEEYKCKECDYKTVRKNCLKEHVKIHTGDEYKCEECDYKTVWKNLLKEHVKIHTGDKYKCKQCDYKTVRKNCLKEHVKIHTGDEYKCEECDYKTVRKNCLKEHVKIHTDDKYKCKECDFKTIWKSALTRHVKIHTGYEYKCKECDYKTVWKNLLKQHNNIHTGEEYKCNECDYKTMRKNCLKEHVKIHTGDEYKCEECDYKTLWKSYLIQHVKIHTGNEYKCKECDYKTVWKNLLKQHNKIHTGDEYKCKECDYKTVWKNCLKEHVKIHTGEEYKCKECDYKTVQKNCLKEHVKIHTGEEYKCKECDYKTVWKNLLKEHVKIHTGEEYKCKECDYKTVRKNCLEKHVKIHTGDEYKCEECDYKTVWKNLLKEHIKIHTGEEYKCKECDYKTVRKNYLKDHVKIHTGNEYKCKECDYKTVWKNLLKQHNKIHTGDEYKCKECDYKTVWKNCLKEHVKIHTGEEYKCKKCDYKTVQKNCLKEHVKIHTGEEYKCKECDYKTVWKNLLKEHVKIHTGEKYNCKDCDYKTVRKNCLKDHVKIHTGDKYKCEACDYKTLWKSYLTQHVKIHTGDKYKCKDCDYKTVRKNCLKEHVKIHTGDEYKCKECDYKTVWKNLLKQHNKIHTGEEYKCKECDYKTVRKNCLKDHVKIHTGEEYKCKECDYKTVRKNCLEEHVKIHTGDEYKCEECNYKTVWKNLLKEHVKIHTGDKYKCKQCNYKTVLKYSLKEHVKIHTGDEYKCKECDFKTIWKSALTRHVKIHKGDEYKCEKCDYKTIWKSALMGHVKIHTGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-