Lyun000108.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:4964253-4966897[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.024 0.35 11.5 1.3 1 23 148 170 148 170 0.97
2 24 0.00031 0.0044 17.5 2.2 1 23 202 224 202 224 0.99
3 24 0.52 7.4 7.4 2.2 1 23 229 251 229 251 0.97
4 24 0.3 4.2 8.1 1.4 1 23 256 278 256 278 0.98
5 24 4.8e-05 0.00068 20.1 2.8 1 23 283 305 283 305 0.98
6 24 8.4e-05 0.0012 19.3 1.9 1 23 310 332 310 332 0.99
7 24 0.0021 0.03 14.9 0.5 1 23 337 359 337 359 0.99
8 24 7.7e-05 0.0011 19.4 1.2 1 23 364 386 364 386 0.98
9 24 0.05 0.71 10.6 1.8 1 23 391 413 391 413 0.98
10 24 0.34 4.8 8.0 3.6 1 23 418 440 418 440 0.98
11 24 0.016 0.23 12.1 1.4 1 23 445 467 445 467 0.99
12 24 0.0019 0.027 15.1 0.4 1 23 472 494 472 494 0.99
13 24 0.00031 0.0044 17.5 2.2 1 23 499 521 499 521 0.99
14 24 0.25 3.5 8.4 2.6 1 23 526 548 526 548 0.98
15 24 0.3 4.2 8.1 1.4 1 23 553 575 553 575 0.98
16 24 2.8e-05 0.0004 20.8 1.0 1 23 580 602 580 602 0.98
17 24 8.4e-05 0.0012 19.3 1.9 1 23 607 629 607 629 0.99
18 24 0.038 0.54 10.9 1.5 1 23 634 656 634 656 0.98
19 24 4.6e-05 0.00065 20.1 4.0 1 23 661 683 661 683 0.99
20 24 0.3 4.2 8.1 1.4 1 23 708 730 708 730 0.98
21 24 2.8e-05 0.0004 20.8 1.0 1 23 735 757 735 757 0.98
22 24 0.00043 0.0061 17.1 2.2 1 23 762 784 762 784 0.99
23 24 0.021 0.29 11.8 0.5 1 23 789 811 789 811 0.98
24 24 0.0075 0.11 13.2 1.0 1 23 816 838 816 838 0.99

Sequence Information

Coding Sequence
ATGAATATCGACTCGGTAGACTTTATTGAAACTtatgctataaaatcagaagtgaaTTTAACGGAGACATTTTCTTCTTGTGGAAACTGCGAAGATTGGGGGAGTCAGGAACTGAAACCGGAAACAGTGGATTGCGAAGAATCGCTTAAACCTAAAGAAGATGATCTTGGAGATTTACATGCTGCTCCGATACAACaagatttttgcaataactcTAATTTTATAACGATTGCAGAAAATTCTCTAATAGAAGTTTTGAAAGTTACTAAAAGCGTTAACTACtcttgtaaggaatgtaactttacaaccGAGTTAGAATGTTCTATAAAAAAGCATACAACGATTCACAGTGACGgatataatattgaagaatgtaattttaaaacaccaGAGATTTTCTTTCTATCGACACAGTTGAAAACTCCAAGAACTGGGAATAAATAtgcttgtaatgaatgtaattacaccacgttgaacaaaaattatctaaGGAAACATGTGAAGATTCACAAAGATGAAACATATAGTTACAAGAAATTGGATTATAATCCAGGGTGGAAAAGTCACTTCATAGcacatggaaaaattcattctggtgatgaatataagtgtacaaaatgtgattataaaactatacagAAAAGTtacctaatgcaacatgtcaaaattcataatggtgacaaatataattgtaaagattgtgattataaaactgtatggagaaattgtctaaaagaacatgtcagaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaactatatggaAAAATCGTCTAAAGGAGCAtgtcagaattcatacaggtgatgaatatatgtgtaatgattgtgattataaaactgtacggaaaagtgatctaaagcatcatctcaaaattcatacaggtgacaaatataagtgtaaagaatgtgagtataaaactgtacggaaaagttatctaaaggaacacattaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaactgtatggaaaagtaatctaatggcacatgtcaaaattcatactggtgacaaatataactgtaaagaatgtgaatataaaactgtacggaaaagtgATTTAatgaaacatattaaaattcatacaggcgatgaatataaatgtaaagagtgcgattataaaacatcatggaaaaataaactaatacaaCATGTCAAAAGTCATACTTgcgacaaatataagtgtaaagaatgtgattataaaagtaaatggagaaattgtctaaaggaacatgtcagaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaactgtatggaaaagtaaactaatgcaacatgttagaattcatacaggtgatgaatataagtgcaaagattgtgattataaaactgtgtggaaaagTGATCTAACGGAACACATCAACATTCattctggtaatgaatataagtgtacaaaatgtgattataaaactatacagAAAAGTtacctaatgcaacatgtcaaaattcataatggtgacaaatataagtgtaaagaatgtgattataaaactgtatggagaaattgtctaaaggaacatgtcagaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaactatatggaAAAATCGTCTAAAGGAGCAtgtcagaattcatacaggtgatgaatatacatgtaatgaatgtgattataaaactgtacggaaaagtgatctaatgcaacatctcaaaattcatacaggtgacaaatataagtgtaaagaatgtgagtataaaactgtacggaaaagttatctaaaggaacacattaaaattcatacaggtgacaaatataagtgtaaagaatgtaattataaaactgtatggaaaagtaaactaatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaactgtacggaaaagtgatctaaagcatcatctcaaaattcatacagaatgtgattataaaactgtatggagaaattgtctaaaggaacatgtcagaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaactatatggaAAAATCGTCTAAAGGAGCAtgtcagaattcatacaggtgatgaatatacatgtaatgaatgtgattataaaactgtacggaaaagtgatctaatgcaacatctcaaaattcatacaggtgacaaatataagtgtaaagaatgtgagtataaaactgtacggaaaagatatctaaaggaacacattaaaattcatacaggtgacaaatataagtgtgaagaatgtgattataaaactgtatggaaaagcAATCTAATGGAACATGCCAAAaatcatactggtgacaaatataagtgtaaagaatgtgtttataaaactgtacggaaaagtgttctaatgcaacatgtcaaaattcatacaggcgataaataa
Protein Sequence
MNIDSVDFIETYAIKSEVNLTETFSSCGNCEDWGSQELKPETVDCEESLKPKEDDLGDLHAAPIQQDFCNNSNFITIAENSLIEVLKVTKSVNYSCKECNFTTELECSIKKHTTIHSDGYNIEECNFKTPEIFFLSTQLKTPRTGNKYACNECNYTTLNKNYLRKHVKIHKDETYSYKKLDYNPGWKSHFIAHGKIHSGDEYKCTKCDYKTIQKSYLMQHVKIHNGDKYNCKDCDYKTVWRNCLKEHVRIHTGDEYKCKECNYKTIWKNRLKEHVRIHTGDEYMCNDCDYKTVRKSDLKHHLKIHTGDKYKCKECEYKTVRKSYLKEHIKIHTGDKYKCKECDYKTVWKSNLMAHVKIHTGDKYNCKECEYKTVRKSDLMKHIKIHTGDEYKCKECDYKTSWKNKLIQHVKSHTCDKYKCKECDYKSKWRNCLKEHVRIHTGDEYKCKECNYKTVWKSKLMQHVRIHTGDEYKCKDCDYKTVWKSDLTEHINIHSGNEYKCTKCDYKTIQKSYLMQHVKIHNGDKYKCKECDYKTVWRNCLKEHVRIHTGDEYKCKECNYKTIWKNRLKEHVRIHTGDEYTCNECDYKTVRKSDLMQHLKIHTGDKYKCKECEYKTVRKSYLKEHIKIHTGDKYKCKECNYKTVWKSKLMQHVKIHTGDKYKCKECDYKTVRKSDLKHHLKIHTECDYKTVWRNCLKEHVRIHTGDEYKCKECNYKTIWKNRLKEHVRIHTGDEYTCNECDYKTVRKSDLMQHLKIHTGDKYKCKECEYKTVRKRYLKEHIKIHTGDKYKCEECDYKTVWKSNLMEHAKNHTGDKYKCKECVYKTVRKSVLMQHVKIHTGDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-