Lyun006829.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001168.1:1062150-1064384[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.2 2.9 8.7 0.1 1 21 67 87 67 88 0.95
2 21 0.023 0.32 11.6 2.8 1 23 146 168 146 168 0.98
3 21 0.00054 0.0077 16.7 1.2 1 23 173 195 173 195 0.99
4 21 6.8e-05 0.00096 19.6 1.6 1 23 200 222 200 222 0.99
5 21 0.029 0.42 11.3 0.3 1 23 227 249 227 249 0.98
6 21 0.00071 0.01 16.4 3.2 1 23 254 276 254 276 0.99
7 21 0.01 0.15 12.7 1.6 1 23 281 303 281 303 0.99
8 21 0.011 0.16 12.6 1.3 1 23 308 330 308 330 0.99
9 21 1.5e-05 0.00022 21.6 1.5 1 23 335 357 335 357 0.99
10 21 0.00076 0.011 16.3 0.9 1 23 362 384 362 384 0.98
11 21 0.00026 0.0037 17.8 0.7 1 23 389 411 389 411 0.98
12 21 0.016 0.23 12.1 3.1 1 23 416 438 416 438 0.99
13 21 3e-05 0.00042 20.7 1.8 1 23 443 465 443 465 0.99
14 21 0.017 0.23 12.1 1.1 1 23 470 492 470 492 0.98
15 21 0.0016 0.022 15.3 3.4 1 23 497 519 497 519 0.99
16 21 1.2e-05 0.00017 22.0 2.0 1 23 524 546 524 546 0.99
17 21 2.6e-05 0.00037 20.9 0.9 1 23 565 587 565 587 0.99
18 21 7.1e-05 0.001 19.5 1.1 1 23 592 614 592 614 0.99
19 21 0.0016 0.023 15.3 2.5 1 23 619 641 619 641 0.99
20 21 0.88 12 6.7 0.4 2 23 647 668 646 668 0.96
21 21 0.19 2.6 8.8 0.9 1 21 673 693 673 694 0.94

Sequence Information

Coding Sequence
atggatATTCATCCCGTTgcaagttgtgaaataaaatccgaagtaattttaacacaaacattttcattttgtggaAATTATGAAGattatggGGGTCAAGAACTGAAAACAGAACCAGAAGATTATGAAGaatcaattaaatgtaaagaatatgatGCTGCAGAGGACATGGATGCACATGCTGGTTCCATTCAACAATATTATTGTaacgaatgtaattttacggCAGTGGAAAGagattctctaatagaacatttgaaaattaatagtaaagatcaatatttttgtgagaaatgtaactttaaaacgcATTTAGAATGTTCTAAAAAAGAGCATTTGGGAATTCACAACTTAGTAGGTGATAAAAATGTCGAAGACTGTAACACACAATGGATTTTCTCTTTAAGATCACAGTTCAAAACTCATGGCAatgaatatatttgtaatgaatgtaactataccacattaaaaaaacataatctaATGAGACACGtaaaaattcatgcaggtgatcaatataagtgtacagaatgcgattataaaacggtgcggAAAAGTCGTCTAATGGAACATGTTAAagttcatacaggcgatgaatataagtgcaaagaatgtgattataaaacagtgcgcaAAAGTTATCTAacggaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtggttataaaacagtatggaaagcTCTTCTAAGGGATCATGCCAAAGTTCATGCAGGTGccgaatataagtgcaaagaatgtgattataagactGTGCGGAAAAGCTGTCTAatggaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaatatcttctaaagcaacatttaaagattcatacaggtgatgagtataagtgtacagaatgtgattataaaacagtgtggaaatatCTTCTGAAGCagcatttaaaaatccatacaagtgatgaatataagtgtaaagaatgtggttataaaactGTGCGAAAATATCTCCTAAACCAACATATAAAAATCCATGCagatgataaatataagtgtaaagaatgtgattataaaacggtgcaaAAAAGTCGTCTGATGGAACACGTTAacattcatacaggtgacgaatataagtgtaaagaatgtgattacaaaacagtgcggaaagctcttctaaaggaacatgccAAAGTTCAtgcaggtgacgaatataagtgcaaggaatgtgattataaaacggtgcgaAAAAGGTGTGTAATGGAACATGttagaattcatacaggtgatgaatataagtgtaaagaatgtggttataaaactGTGCGAAAATATCTCCTAaaccaacatttaaaaattcatgctggtgataaatataagtgtaaagaatgtgattacaaaacagtgtggaaaagttcTCTAATGCAACATGTAAAACTTCACgtaggtgatgaatataagtgcaaagaatgtgattataagacgGTGCGAAAAAGGTGTCTAATGGAACATGTTAGAATTCATAcaagtgatgaatataagtgtaaagaatgtggttataaaactGTGCGGAAATATCTCCTAAAccgacatttaaaaattcatgcagtgtggccatatcttctaaagcaacatttaaaaattcaggcaggtgatgaatataagtgtaaagaatgtgattataaaacagcgcagaaaagtaatctaatggaacatgttaaaattcatacaggcgataaatataagtgtaaagaatgtgattataaaacagcgcaGAAAGCTCttctaaagcaacatttaaaaattcatgcaggggatgaatataagtgcaaagaatgtgattataaaacagtgtcgaaaagaaaagtaaagcaacatttaagaattcatacaggtgatgaaagtaaatgtaaagaatgtgcttataaaacagtgtggccatatcttctaaagcaacatttaaaaattcacgcaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaacgtCTTCTTAATCAACATCAACAAagattcatacaggcgatgactataactgtaaagaatgtgattataagacagTGCAGAAAAGCTGTCTaa
Protein Sequence
MDIHPVASCEIKSEVILTQTFSFCGNYEDYGGQELKTEPEDYEESIKCKEYDAAEDMDAHAGSIQQYYCNECNFTAVERDSLIEHLKINSKDQYFCEKCNFKTHLECSKKEHLGIHNLVGDKNVEDCNTQWIFSLRSQFKTHGNEYICNECNYTTLKKHNLMRHVKIHAGDQYKCTECDYKTVRKSRLMEHVKVHTGDEYKCKECDYKTVRKSYLTEHVKIHTGDEYKCKECGYKTVWKALLRDHAKVHAGAEYKCKECDYKTVRKSCLMEHVKIHTGDEYKCKECDYKTVWKYLLKQHLKIHTGDEYKCTECDYKTVWKYLLKQHLKIHTSDEYKCKECGYKTVRKYLLNQHIKIHADDKYKCKECDYKTVQKSRLMEHVNIHTGDEYKCKECDYKTVRKALLKEHAKVHAGDEYKCKECDYKTVRKRCVMEHVRIHTGDEYKCKECGYKTVRKYLLNQHLKIHAGDKYKCKECDYKTVWKSSLMQHVKLHVGDEYKCKECDYKTVRKRCLMEHVRIHTSDEYKCKECGYKTVRKYLLNRHLKIHAVWPYLLKQHLKIQAGDEYKCKECDYKTAQKSNLMEHVKIHTGDKYKCKECDYKTAQKALLKQHLKIHAGDEYKCKECDYKTVSKRKVKQHLRIHTGDESKCKECAYKTVWPYLLKQHLKIHAGDEYKCKECDYKTVWKRLLNQHQQRFIQAMTITVKNVIIRQCRKAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-