Lyun015180.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
PCED1A
Assembly
GCA_013368075.1
Location
JABVZV010002131.1:5063847-5083412[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.035 0.49 11.1 1.6 1 23 152 174 152 174 0.98
2 24 0.5 7.1 7.4 0.9 1 23 206 228 206 228 0.97
3 24 4.4e-05 0.00062 20.2 1.3 1 23 233 255 233 255 0.99
4 24 0.0062 0.088 13.4 1.4 1 23 260 282 260 282 0.98
5 24 0.0086 0.12 13.0 0.8 1 23 287 309 287 309 0.98
6 24 0.0019 0.027 15.0 1.9 1 23 314 336 314 336 0.99
7 24 0.0001 0.0015 19.0 1.0 1 23 341 363 341 363 0.99
8 24 0.52 7.4 7.4 2.2 1 23 368 390 368 390 0.98
9 24 0.00055 0.0078 16.7 1.6 1 23 395 417 395 417 0.99
10 24 0.0063 0.09 13.4 1.7 1 23 574 596 574 596 0.98
11 24 0.00018 0.0026 18.2 3.6 1 23 601 623 601 623 0.98
12 24 0.11 1.6 9.5 1.4 1 23 628 650 628 650 0.98
13 24 0.00027 0.0039 17.7 1.3 1 23 655 677 655 677 0.99
14 24 0.017 0.24 12.0 2.2 1 23 682 704 682 704 0.98
15 24 6.5e-05 0.00093 19.6 1.2 1 23 709 731 709 731 0.99
16 24 0.058 0.83 10.4 2.5 1 23 736 758 736 758 0.98
17 24 0.0066 0.094 13.3 0.5 1 23 763 785 763 785 0.98
18 24 0.00062 0.0088 16.6 2.0 1 23 790 812 790 812 0.99
19 24 0.0034 0.048 14.2 3.5 1 23 817 839 817 839 0.99
20 24 0.0016 0.022 15.3 1.0 1 23 844 866 844 866 0.99
21 24 4.5e-05 0.00063 20.2 3.1 1 23 871 893 871 893 0.99
22 24 0.03 0.42 11.3 0.4 1 23 898 920 898 920 0.98
23 24 0.00062 0.0088 16.6 2.0 1 23 925 947 925 947 0.99
24 24 0.0083 0.12 13.0 0.8 1 23 952 974 952 974 0.98

Sequence Information

Coding Sequence
ATGGATATCGACTCTGTAGAGTTTATTCAAAGTCGTGCTATAAAATCGGAAGTGATTTTAAcggagaaattttctttttgtgggaaatacGAAGATTGTGAGAGTAAGGAACTGAAACCGGAACCATTAGATTACGAAGAATTgcttaaacttaaaaaagaaaatgatatggCAGAACCCATAGATACGCATGCTGCTCCGATGCAACGAGATTTTTGTAATGActctaattttataacaattgcAGAAAACTCTATAAAAGAACTTTTGAAAGTTactaaaaacgttaaatacTCTTGCaaggaatgtaactttacaacccAGTTAGAATGTTTTATAAAAGAGCATGTGAGGATTCACAATGATGGATATAATATtgaagaaagtaattttaagaTGTCACAGATTTCCTCCCTATCATCACAGTTGAAAACTCCAAGAAGTGGGAATGAAtatgtttgtaatgaatgtaattacactacttggaataaaaattatctaaagaaacatgtgaaGCTTCACACAAGTGCTGTATATAGTTGCGAGAAATGTGGCTATAATGCATGGTGGAAAAGTCAGTTCACAGcacatcttaaaattcatactggtgagaaatataagtgtatagaatgtgattataaaacagtatcaAAACaacgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgagaaaagataatctaaaggaacatgtcaaaattcatactggcatCAAATAcaagtgtacagaatgtgattataaaacagtatcaAAACaacgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaggaatgtgattataaaacagtgagaattgatcgtctaaaggaacatgtcaaaattcatactggtgataaatataagtgtaccgaatgtgattataaaacagtgagaaaatatcgtctaaaggaacatgtcaaaattcatactagtgatgaatataagtgtcaagaatgtgattataaaacagtacggaaaagtgacctaatgcaacatgtcaaaattcattcaggtgacgagtataagtgtaaagaatgcgtttttaaaacagcatggaaaagtcatctaaaggaacatgtcaaaattcatactggtaacgaatataagtgtaaagaatgtgattataaaaccgtGCGGAAAAATTATCTacaggaacatgtcaaaattcatactggtgacaaaattATATCTTGTACAATGGATATCGACTCAGTAGAGTTTAATCATAGTCGTGCTATAAAATcggaagtgattttaacagagacCTTTTCTTTCTGTGGGAGTTACGAAGattGTGGGAGTAAGGAATTTAAACAAGAGCCAGTAGATTATGAAGAATCGCTTAAacctaaagaagaaaatgataaagtagaacCCATAGATATGCATGCTGCTCCGatgcaacaaaatttttgtaatgactctaattttataacaattggaGAAAACTCTGTAGTAGAATTTTTGAAAGTTactaaaaacgttaaatactcttgtaaggaatgtaactttaaaacccAGTTAGAATGTTCTATAAAAGAGCATACGTGGATTCACAATGATGGatataatattgaagaaaataattttaagatgcCAGCATCATCACAGTTGAAAACTTCAAGAAGCGAGAATGGATATgattgtaatgaatgtaattatactacATGGAACAAAAATTATCTAAGGAAACATATGAAGGTCCACAAAAGTGTTGCATATAGTTGcaagaaatgtgattataaaactgtacggaaaagtcatctaaaggcacatgtcaaaattcatactggtgacaaatataactgtaaagaatgtgattataaaacagtatggaaaggtcatctaaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtacggaaaactgatctaatgcaacatgtcaaaattcattcaggtgatgaatataagtgtaaaggatgtgattataaaacagtatggaaaagtcatctaaaggaacatgtcaaaattcacacagatgatgaatataagtgtaaagaatgtgattataaaactgtacggaaaagtgatctaatgcaacatgttaaaattcattcaggtgacgaatataagtgtaaagattgtgattataaaacagtatggaaacgtcatctaacggaacacgtcaaaattcatacaggtgatgaatataagtgtttagaatgtgtttataaaactgtacgaaAAAGTgctctaatgcaacatgtcaaaattcattcaggtgacgaatataagtgtaaagaatgtgattataaaacggtacggaaaaattatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatcaAAACaatgtctaaaggaacatgtcagaATTCAcaccggtgatgaatataagtgtcaagaatgtgattataaaacagtatcaAAACAACTTCTCaaggaacacgtcaaaattcatacgggtgatgaatataaatgtaaagaatgtgattataaaactgtacggaaaagtcatctaaaggcacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaactgtatggaaaagtgGTCTAatacaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacggtacggaaaaattatctaaaggaacatgtcaaaattcatactggtgataaatataagtgtaaagaatgtgattataaaacagtatggagaagtaatctaatgcaacatgtgaaaattcattcAGgaaGAATGGTTTGTGGTATCTTTTCAATTGAGCACGCAACTGAATTATTACGAGGCAAGTACATTTACTTTTTTGGAGATTCGAATGTGAGAGGCATTTATAAAGATCTACTGTGGTTAGTCGAATACGGACAGTTAACACCTGATGAAAATTTGAAATCGAAAAACGAGCTCTCATACGCCAACGATCTACGTGTGTCCAACTGTGCGGCCCATAATGGCTGCAATTATCAGGAGAGGCGTGAATACTATGGAAGCGCAACtattaaattccattttttaacgaaattattCGATACTGAATTTATCAAATTGATTCAAAGTTTAAAAACTCACCCAGACATTATCTTTATAAACAGTTGCCTGTGGGATTTGAGCCGATGGGGTAACAACGGGGTGGAACAATACAAGAGCAACATTTTTCAcactttgcattttttaaaacagactcTTCCACAAACTCGTATCGTTTGGCTTTTAAGTCAGCCTCTCAGTTTCTTCACCAACGGGGGTTTTCTGAcgaaaaaagtcaaatttatgAGATCGATGCTACCGTGGCACGTAGTTTTTGCAAACAAGTACGCTGCAAGAGTTGCCGCCTATTTTTCAATTGACGTGTTGGATTTCCACTATTATCTTcggtttttgcaaaattttcactCGTCCGACGGTGTGCATTGGGTGTCAGTGATAATGcgatttataacaaatttgttgCTAACCCATATCGCTTTAATATACAGGCAGCATTTGCCCACCTTCCTTCCGTTAAAGACGAATTTTTTAACCgtacaaaaaatacaaccacCAAGTTCCACTTTTTTTGATTCCTTCTTACAAGATCGGTATCTGAGAAAAGCTATCTCTCAAAATAGatcaattttattaagaaaatcaaAAGATTTAAGACACtatttgagaagaaaaagaaaacttacgAACCGAATTCGTAAGACATTAACATTTAACTTATAA
Protein Sequence
MDIDSVEFIQSRAIKSEVILTEKFSFCGKYEDCESKELKPEPLDYEELLKLKKENDMAEPIDTHAAPMQRDFCNDSNFITIAENSIKELLKVTKNVKYSCKECNFTTQLECFIKEHVRIHNDGYNIEESNFKMSQISSLSSQLKTPRSGNEYVCNECNYTTWNKNYLKKHVKLHTSAVYSCEKCGYNAWWKSQFTAHLKIHTGEKYKCIECDYKTVSKQRLKEHVKIHTGDEYKCKECDYKTVRKDNLKEHVKIHTGIKYKCTECDYKTVSKQRLKEHVKIHTGDEYKCKECDYKTVRIDRLKEHVKIHTGDKYKCTECDYKTVRKYRLKEHVKIHTSDEYKCQECDYKTVRKSDLMQHVKIHSGDEYKCKECVFKTAWKSHLKEHVKIHTGNEYKCKECDYKTVRKNYLQEHVKIHTGDKIISCTMDIDSVEFNHSRAIKSEVILTETFSFCGSYEDCGSKEFKQEPVDYEESLKPKEENDKVEPIDMHAAPMQQNFCNDSNFITIGENSVVEFLKVTKNVKYSCKECNFKTQLECSIKEHTWIHNDGYNIEENNFKMPASSQLKTSRSENGYDCNECNYTTWNKNYLRKHMKVHKSVAYSCKKCDYKTVRKSHLKAHVKIHTGDKYNCKECDYKTVWKGHLKEHVKIHTGDEYKCKECDYKTVRKTDLMQHVKIHSGDEYKCKGCDYKTVWKSHLKEHVKIHTDDEYKCKECDYKTVRKSDLMQHVKIHSGDEYKCKDCDYKTVWKRHLTEHVKIHTGDEYKCLECVYKTVRKSALMQHVKIHSGDEYKCKECDYKTVRKNYLKEHVKIHTGDEYKCKECDYKTVSKQCLKEHVRIHTGDEYKCQECDYKTVSKQLLKEHVKIHTGDEYKCKECDYKTVRKSHLKAHVKIHTGDEYKCKECDYKTVWKSGLIQHVKIHTGDEYKCKECDYKTVRKNYLKEHVKIHTGDKYKCKECDYKTVWRSNLMQHVKIHSGRMVCGIFSIEHATELLRGKYIYFFGDSNVRGIYKDLLWLVEYGQLTPDENLKSKNELSYANDLRVSNCAAHNGCNYQERREYYGSATIKFHFLTKLFDTEFIKLIQSLKTHPDIIFINSCLWDLSRWGNNGVEQYKSNIFHTLHFLKQTLPQTRIVWLLSQPLSFFTNGGFLTKKVKFMRSMLPWHVVFANKYAARVAAYFSIDVLDFHYYLRFLQNFHSSDGVHWVSVIMRFITNLLLTHIALIYRQHLPTFLPLKTNFLTVQKIQPPSSTFFDSFLQDRYLRKAISQNRSILLRKSKDLRHYLRRKRKLTNRIRKTLTFNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-