Lyun000038.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:471458-474135[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0019 0.028 15.0 1.3 1 23 141 163 141 163 0.98
2 25 1.5 22 5.9 2.0 1 23 168 190 168 190 0.97
3 25 0.0063 0.089 13.4 2.8 1 23 195 217 195 217 0.98
4 25 0.0011 0.016 15.7 1.3 1 23 222 244 222 244 0.99
5 25 0.0014 0.019 15.5 2.0 1 23 249 271 249 271 0.99
6 25 0.011 0.15 12.7 2.6 1 23 276 298 276 298 0.98
7 25 0.0014 0.019 15.5 2.0 1 23 303 325 303 325 0.99
8 25 0.00079 0.011 16.2 1.4 1 23 330 352 330 352 0.99
9 25 0.00081 0.012 16.2 1.6 1 23 357 379 357 379 0.99
10 25 0.0063 0.089 13.4 2.8 1 23 384 406 384 406 0.98
11 25 0.0011 0.016 15.7 1.3 1 23 411 433 411 433 0.99
12 25 0.0011 0.016 15.7 1.3 1 23 438 460 438 460 0.99
13 25 0.0004 0.0057 17.2 2.2 1 23 465 487 465 487 0.99
14 25 0.0015 0.021 15.4 1.9 1 23 492 514 492 514 0.99
15 25 0.0012 0.017 15.7 1.6 1 23 519 541 519 541 0.99
16 25 0.026 0.37 11.5 1.2 1 23 546 568 546 568 0.99
17 25 0.043 0.61 10.8 2.6 2 23 574 595 573 595 0.96
18 25 0.0011 0.016 15.7 1.3 1 23 600 622 600 622 0.99
19 25 0.0025 0.036 14.7 1.7 1 23 627 649 627 649 0.98
20 25 0.0014 0.019 15.5 2.0 1 23 654 676 654 676 0.99
21 25 0.0086 0.12 13.0 1.0 1 23 681 703 681 703 0.99
22 25 0.018 0.25 12.0 1.7 1 23 708 730 708 730 0.99
23 25 0.55 7.8 7.3 1.4 1 23 735 757 735 757 0.97
24 25 0.0014 0.019 15.5 2.0 1 23 762 784 762 784 0.99
25 25 0.24 3.5 8.4 2.4 1 23 789 811 789 811 0.98

Sequence Information

Coding Sequence
ATGGATGTTGATTCGATAAAAAATTGTGCAATCaaatctgaagtgattttaacagaaacatttatgttttctgtaaaatatgaagATTGTGGTGACGGTCAAGAATCGCTAACAGAATCAGTAGTTTATGAAGATTCCATTAAATGTAAAGAAGAAGATTCTGTAGAGCACATTGACATACACGCTACTCCACGCCAATGTATTgatgaatataattttacaacaaCGCAAAGGAATTGTCCgatagaacatttgaaaattactaaaaatgttttgtattcttgtaaggaatgtaacttcACAACGCAGTTGGAAATTTCCATAAAAgagcatttaaaatttcacaacGGAGTAGATGGTCAGTATATCATTGTGGAATGTAAAATACCAAAGCCCGAAACTCAAAGAATTCGTgacaaatacatttgtaatgaatgtaactatAGCACATTCATCAAAAGAAATCTAAAgaatcatataaaaattcacacaggtgatgaatataagtgtaaagcatgtgattataaaacactgcaGAAATATcgactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgcagaaatatcgactaaaggaacatgtcaaacttcatacaggtgatgaatataaatgtaaagaatgtgattataaaactgtgtggaaagATCAACTAaagaaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcagaaatatcgactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgcagaaatatcgactaaaggaacatgccaaacttcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcagaaatatcgactaaaggaacatgtcaagattcatacaggtgatgaatataagtgtaaagattgtgattataaaactgtgtggaaagATCAACTAaagaaacacatcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagtggaTAAGTATCgattaaaggaacatgtcaaaatacacacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgcagaaatatcgactaaaggaacatgtcaaacttcatacaggtgatgaatataaatgtaaagaatgtgattataaaactgtgtggaaagATCAACTAaagaaacacatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaactgtgtggaaagATCAACTAaagaaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcagaaaaGTCGACttaagcaacatgtcaaaattcatactggtgatgaatataagtgtaaagattgtgattataaaacagtacagagaTATaggctaaaggaacatgtcaaaatacacacaggtgatgaatataagtgtaaagaatgtgattataaaacagtggaTAAGTATCgattaaaggaacatgtcaagattcatacaggtgatgaatataagtgtaaaaaatgtgattataagactGCGTGGAAAAATCtactaaaggaacacatcaaaattcatgcaggtgatgaatgtaagtgtaatgaatgtgattataaaacagtgcaattGTATcggctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaagATCAACTAaagaaacacatcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtgcagaaaaatcgactaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgcagaaatatcgactaaaggaacatgtcaaaatacacacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaatcaactaaaagaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtgtggaaatatcaattaaaggaacatgtcaaaagtcatacgggtgatgaatataagtgtaaagaatgtaattataagacCGTGTGGAAAAATCGACTAagggaacatgtcaaaattcatacgggtatagaatataagtgtaaagaatgtgattataagacagtgcagaaatatcgactaaaggaacatgtcaaaattcatacaggtgatgaatacaagtgtaatgggtgtgattataaaacggtgtggaaaaAATGTCTAGtgaaacatgttaaaattcatacaggtgacaaattaAGTGTagacactaattattaa
Protein Sequence
MDVDSIKNCAIKSEVILTETFMFSVKYEDCGDGQESLTESVVYEDSIKCKEEDSVEHIDIHATPRQCIDEYNFTTTQRNCPIEHLKITKNVLYSCKECNFTTQLEISIKEHLKFHNGVDGQYIIVECKIPKPETQRIRDKYICNECNYSTFIKRNLKNHIKIHTGDEYKCKACDYKTLQKYRLKEHVKIHTGDEYKCKECNYKTVQKYRLKEHVKLHTGDEYKCKECDYKTVWKDQLKKHIKIHTGDEYKCKECDYKTVQKYRLKEHVKIHTGDEYKCKECNYKTVQKYRLKEHAKLHTGDEYKCKECDYKTVQKYRLKEHVKIHTGDEYKCKDCDYKTVWKDQLKKHIKIHTGDEYKCKDCDYKTVDKYRLKEHVKIHTGDEYKCKECNYKTVQKYRLKEHVKLHTGDEYKCKECDYKTVWKDQLKKHIKIHTGDEYKCKECDYKTVWKDQLKKHIKIHTGDEYKCKECDYKTVQKSRLKQHVKIHTGDEYKCKDCDYKTVQRYRLKEHVKIHTGDEYKCKECDYKTVDKYRLKEHVKIHTGDEYKCKKCDYKTAWKNLLKEHIKIHAGDECKCNECDYKTVQLYRLKEHVKIHTGDEYKCKECDYKTVWKDQLKKHIKIHTGDEYKCKECDYKTVQKNRLKEHVKIHTGDEYKCKECDYKTVQKYRLKEHVKIHTGDEYKCKECDYKTVWKNQLKEHIKIHTGDEYKCKECDYKTVWKYQLKEHVKSHTGDEYKCKECNYKTVWKNRLREHVKIHTGIEYKCKECDYKTVQKYRLKEHVKIHTGDEYKCNGCDYKTVWKKCLVKHVKIHTGDKLSVDTNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-