Lyun018317.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002464.1:740966-750751[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00049 0.0069 16.9 1.9 1 23 143 165 143 165 0.99
2 28 0.39 5.5 7.8 0.7 1 23 170 192 170 192 0.95
3 28 0.0029 0.041 14.5 1.5 1 23 197 219 197 219 0.98
4 28 0.0015 0.021 15.4 1.1 1 23 224 246 224 246 0.99
5 28 0.0037 0.053 14.1 3.6 1 23 251 273 251 273 0.99
6 28 0.0069 0.097 13.3 1.7 1 23 278 300 278 300 0.98
7 28 0.063 0.9 10.2 0.6 1 23 305 327 305 327 0.98
8 28 0.0019 0.027 15.0 1.8 1 23 332 354 332 354 0.98
9 28 0.0005 0.007 16.9 1.1 1 23 359 381 359 381 0.99
10 28 0.032 0.45 11.2 2.0 1 21 474 494 474 495 0.96
11 28 0.47 6.7 7.5 1.8 1 23 580 602 580 602 0.94
12 28 0.0026 0.036 14.6 0.5 2 23 608 629 607 629 0.97
13 28 0.005 0.07 13.7 0.3 2 23 635 656 634 656 0.97
14 28 0.015 0.21 12.2 1.8 2 23 662 683 661 683 0.97
15 28 0.006 0.085 13.5 5.9 2 23 689 710 688 710 0.97
16 28 0.0004 0.0057 17.2 1.3 2 23 716 737 715 737 0.97
17 28 0.0078 0.11 13.1 2.6 2 23 743 764 742 764 0.97
18 28 0.039 0.55 10.9 0.6 2 23 770 791 769 791 0.97
19 28 0.048 0.69 10.6 1.1 2 23 797 818 796 818 0.97
20 28 0.00036 0.0051 17.3 0.7 2 23 824 845 823 845 0.97
21 28 0.012 0.18 12.5 1.1 2 23 851 872 850 872 0.97
22 28 0.0014 0.02 15.5 1.0 2 23 878 899 877 899 0.97
23 28 0.00086 0.012 16.1 0.7 2 23 905 926 904 926 0.97
24 28 0.02 0.28 11.8 0.9 2 23 932 953 931 953 0.97
25 28 0.022 0.32 11.7 1.4 2 23 959 980 958 980 0.97
26 28 0.00034 0.0048 17.4 0.8 2 23 986 1007 985 1007 0.97
27 28 0.013 0.19 12.4 0.3 2 23 1013 1034 1012 1034 0.97
28 28 0.21 3 8.6 4.1 2 23 1040 1061 1039 1061 0.97

Sequence Information

Coding Sequence
ATGAATATTAATTGTAGTGAAAGTTGTACAATAAAAtctgaaattattttaacagaaacattttgtgAAAACTATGAAGATTGTCATAATGAAGTACTAAAAACGGAGCTAATAGATTACAAAGAATTGTTTAGGTGTAAGGAAGAAGATGATCCTGCAGAGCACATGGATACATCTGTTGCTCCAATACAACAATGTTCTGGTAATGAGCGTAACTTTACAACAATGGAAAATGATTCTCTGCTAGaacatttaaaaactacaaaaaatgttcaatatttttgtaagcaatGTAACTTTAGAACTCGTTTGGAATGTTTCATAAAAAAGCATTCGAAAATTCACGAGGGAGTAGAAGACACTTATGTTGttaaggaatgtaattttaagacgcCACAGAGTTTTTCTTTAGCACCAGGtcaggaatataagtgtaacgaatgtgattataaaacagtgcggaaacaaaatatgaagaatcatgtcaaaattcacacaggtgataaatataaatgtaaagaatgtgattatacaaCAGTGTGGAAATATCTTATGAAGggtcatgtcaaaattcatactggtgacgaatataaatgtaaagaatgtgattataaaacagtgtcaAAATATCTTATGaaggatcatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgtggaaaagtaatCTGAAGGTtcatcttaaaattcatacaggtgaagaatataaatgtaaagtatgtgattataagacagtgcagaaatatcatatgaaggatcatgtcaaaattcatacaggcgataaatataaatgtaaagaatgtgattataaaacagtacgaaaagATCGTATGaaggatcatgtcaaaattcatacaggtgatgagtataaatgtaaagaatgtgattatacaaCTGTGTGGAAAGATAGTATGaaggatcatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgaggaaataTCTTATGAAGgatcatgtaaaaattcatagaggcgatgagtataaatgtaaagaatgtgattataaaacagtgcggaaacttaatctaaatgaacatgtcaagattcatacagTATCTCATGTTGACAGCACGTTTTGTTTGCGACCGTCAACAAATTATAGAAGTAAATCTTGGGTGTATATAATGGATGTCGATTGCACTGAAAGTTGtccaataaaatctgaagtgattgTAACAGAAATATTTTCGTTTTGTGGAGAATTCAGAGGTTATggaaataaagaattgaaatcaGAACCAGTAGATAttgaagaatcttttaaatgcaaGGAGGAAGATAATGTTGCAGAGCATATGGATATATCTGCTGATACTATACAGCAATATACTTGTAATGATTGTAACTTTAGCACAACTGAAAGGGAATGTCTAATAAAACATCTGAAAAGTACTGAAAACATTCAACatttgtgtaaagaatgtaactttGAAACTCTATTGAAATGTTCCATGaatgaacatttaagaattcatCATGGAGTAGatagtaaatgtaatttttggacACCTCAAATTATCTCTGAAACACAACAATTGAAAACTACTGAAAGTgatgattattatatttgtaatcaatttgGTTTTGAAACACAATCAAAACATGaactaaaaatacatttaaataatgatATAGATAATAAGTAtatgtgtaaggaatgtgattttaaaacattgtgGAAATCTAATCTTTacaaacatatgaaaattcacaccgGTGATAGattgaagtgtaaagaatgtgactacatAACCGTGTGGAAATCTAATCTTAAcaatcatatgaaaattcacactggtgataaattgaagtgtaaagaatgtgactatataACTGTGTGGAAATCTAATCTCATcacacatatgaaaattcatacaggtgttgaattgaagtgtaaagaatgtgactacaaaactcgtacgagatttatattaaaagaacatatgagaattcatacggGTGACAAATtgaagtgtaaggaatgtgactacaaaactcaTCGGAAACATGATCTTAGTacacatatgagaattcatacaggtaacgAATTGacatgtaaggaatgtgattataaaactattagGAAACAGGATCTTAAgatgcatatgaaaattcacataGGTGAAaaattgaagtgtaaagaatgtgactacaaaactacTAGGATTCGAGAACTTCActtgcatatgaaaattcacacaggtgatgaattaaagtgcaaggaatgtgactataaaactcctagggaatttatattaaaagaacatatgagaattcatacaggcgatgaattgaagtgtaaggaatgtgactacaaaactcctaagaaatttatattaaaagaacatatgagaattcacACAGGTAATGAATTGAAGTGTgcagaatgtgactacaaaacttcTAGGAAACAAGACCTTAACTTGcacatgaaaattcacacaggtgataaattgaaatgtaaagaatgtgattacaaaactcctaggaaatttatattaaaagaacatatgagaattcatacaggtgatgaattgaagtgtaaggaatgtgactacaaaactcctaggaaatttgtattaagggaacatatgagaattcacACAGGTAATGAATTGAAGTGTACAGattgtgactacaaaactcctaGGAAACAAGATCTTAACTTGCACttgaaaattcacacaggtgataaattgaaatgtaaagaatgtgattacaaaactcctagtaagtttatattaaaagaacatatgagaattcatacaggtgatgaattgaagTGTAAGGAATGCAATTACAAAACTCCtaggaaatttatattaaaagaacatatgagaattcacacaggtgatgaattgaagtgtacagaatgtgactacaaaactcctaGGAAACAAGATCTTAActtgcatatgaaaattcacacaggtgacaAATTGAAATGTGAAGTATGTGACTACCAAACTCCTaggaaatatatattaaaagaacatatgagaattcatacaggcaACGAATtgaagtgtaaggaatgtgactacaaaactcaTAGGAAACAGGTTTATAACACACATATGAAGATTCACAcagatgaaaaattaaattgtaaagaatatgACTACAAAACTTCTAGGAAACAGGATGTTATGACAATTAATGCAGGTGATGAGActttaaaacagtgtggaaatataatttttaaaaacacggAAGTTGTTGATAATAAACACCTTAATCTCaactattaa
Protein Sequence
MNINCSESCTIKSEIILTETFCENYEDCHNEVLKTELIDYKELFRCKEEDDPAEHMDTSVAPIQQCSGNERNFTTMENDSLLEHLKTTKNVQYFCKQCNFRTRLECFIKKHSKIHEGVEDTYVVKECNFKTPQSFSLAPGQEYKCNECDYKTVRKQNMKNHVKIHTGDKYKCKECDYTTVWKYLMKGHVKIHTGDEYKCKECDYKTVSKYLMKDHVKIHTGDEYKCKECDYKTVWKSNLKVHLKIHTGEEYKCKVCDYKTVQKYHMKDHVKIHTGDKYKCKECDYKTVRKDRMKDHVKIHTGDEYKCKECDYTTVWKDSMKDHVKIHTGDEYKCKECDYKTVRKYLMKDHVKIHRGDEYKCKECDYKTVRKLNLNEHVKIHTVSHVDSTFCLRPSTNYRSKSWVYIMDVDCTESCPIKSEVIVTEIFSFCGEFRGYGNKELKSEPVDIEESFKCKEEDNVAEHMDISADTIQQYTCNDCNFSTTERECLIKHLKSTENIQHLCKECNFETLLKCSMNEHLRIHHGVDSKCNFWTPQIISETQQLKTTESDDYYICNQFGFETQSKHELKIHLNNDIDNKYMCKECDFKTLWKSNLYKHMKIHTGDRLKCKECDYITVWKSNLNNHMKIHTGDKLKCKECDYITVWKSNLITHMKIHTGVELKCKECDYKTRTRFILKEHMRIHTGDKLKCKECDYKTHRKHDLSTHMRIHTGNELTCKECDYKTIRKQDLKMHMKIHIGEKLKCKECDYKTTRIRELHLHMKIHTGDELKCKECDYKTPREFILKEHMRIHTGDELKCKECDYKTPKKFILKEHMRIHTGNELKCAECDYKTSRKQDLNLHMKIHTGDKLKCKECDYKTPRKFILKEHMRIHTGDELKCKECDYKTPRKFVLREHMRIHTGNELKCTDCDYKTPRKQDLNLHLKIHTGDKLKCKECDYKTPSKFILKEHMRIHTGDELKCKECNYKTPRKFILKEHMRIHTGDELKCTECDYKTPRKQDLNLHMKIHTGDKLKCEVCDYQTPRKYILKEHMRIHTGNELKCKECDYKTHRKQVYNTHMKIHTDEKLNCKEYDYKTSRKQDVMTINAGDETLKQCGNIIFKNTEVVDNKHLNLNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-