Lyun000452.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000047.1:1899869-1920278[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 3.3 46 4.9 8.6 1 22 64 85 64 96 0.97 2 36 2.1 30 5.4 1.0 1 23 124 146 124 146 0.96 3 36 0.0035 0.05 14.2 1.0 1 23 151 173 151 173 0.98 4 36 0.00017 0.0024 18.3 0.7 2 23 179 200 178 200 0.97 5 36 0.003 0.043 14.4 0.7 2 23 206 227 205 227 0.97 6 36 0.055 0.78 10.4 1.9 2 23 233 254 232 254 0.96 7 36 0.03 0.42 11.3 1.5 2 23 260 281 259 281 0.97 8 36 9.7e-05 0.0014 19.1 1.3 2 23 287 308 286 308 0.97 9 36 4.3 61 4.5 2.8 1 23 313 335 313 335 0.91 10 36 0.35 4.9 7.9 0.8 1 23 494 516 494 516 0.97 11 36 2.8 40 5.1 2.6 1 23 521 543 521 543 0.97 12 36 0.83 12 6.7 3.6 2 23 549 570 548 570 0.96 13 36 0.0002 0.0028 18.1 1.4 2 23 576 597 575 597 0.97 14 36 0.00029 0.0041 17.6 1.3 2 23 603 624 602 624 0.98 15 36 0.0011 0.015 15.8 2.3 2 23 630 651 629 651 0.97 16 36 0.00089 0.013 16.1 2.1 2 23 657 678 656 678 0.97 17 36 0.86 12 6.7 3.1 2 23 684 705 683 705 0.97 18 36 0.00023 0.0033 17.9 1.1 2 23 711 732 710 732 0.97 19 36 0.064 0.91 10.2 1.8 2 23 738 759 737 759 0.97 20 36 0.001 0.015 15.9 0.6 2 23 765 786 764 786 0.97 21 36 0.00053 0.0075 16.8 1.8 2 23 792 813 791 813 0.97 22 36 7.1 1e+02 3.8 3.3 1 23 818 840 818 840 0.91 23 36 0.011 0.15 12.7 0.9 1 23 845 867 845 867 0.97 24 36 0.2 2.8 8.7 0.2 2 23 873 894 872 894 0.97 25 36 0.0002 0.0028 18.1 1.4 2 23 900 921 899 921 0.97 26 36 0.00012 0.0016 18.9 3.2 1 23 926 948 926 948 0.99 27 36 0.042 0.59 10.8 3.2 1 23 1128 1150 1128 1150 0.99 28 36 0.012 0.17 12.5 3.6 2 23 1156 1177 1155 1177 0.96 29 36 0.43 6 7.6 0.5 2 23 1183 1204 1182 1204 0.96 30 36 0.18 2.6 8.8 11.0 1 23 1209 1231 1209 1231 0.95 31 36 0.13 1.9 9.2 0.4 2 23 1237 1258 1236 1258 0.96 32 36 0.0022 0.031 14.9 7.3 1 23 1263 1285 1263 1285 0.98 33 36 0.054 0.76 10.5 0.6 2 23 1291 1312 1290 1312 0.97 34 36 0.52 7.4 7.4 3.6 2 23 1318 1339 1317 1339 0.96 35 36 0.034 0.48 11.1 0.8 2 23 1345 1366 1344 1366 0.97 36 36 0.00042 0.006 17.1 1.1 2 23 1372 1393 1371 1393 0.97
Sequence Information
- Coding Sequence
- ATGGATGTTGATTGCAATGAAAGTTGTCCAATAAAAACTGAGGTGATtctaacagaaacattttctttttgtgcagaATTCCGAGATTATGggaataataaattgaaatcagACCTAGCAGATATCACAGAATATTTTAAATGCAAGGACGAGGATAACCTTGCAGAGCATATGGATCCTGTACAGCAATATACTTGTAATGATTGCAACTTTAGAACAACAGAAAAGGATTGTCTAATGAAACATCTGAAAAAATGTTCTATGAATGTACATTTAAGAATTCATCATGGAGTAGATAGTAAATGTAACTTGACACCTCAAATTATCTCTGCAACACAACAATTGAAAGCTGCTGAAAGTGGTAATTACTATATTTGTAATCAGTGTGGTTTtaaaacacaatggaaaaataaactaaaaatacatataaataatcaCATAGGTAATAAGTAtatgtgtaaggaatgtgattttaaaacagtgtggaaatctAATCTTAAcaatcatatgaaaattcatacaggtgataaattgaagtgtaaagtatgtgactacaaaactcctaGAAAAGATAAATTAGAagaacatatgagaattcatacgggtgataaattgaagtgtaaagaatgtgtcTACAAAACTGCTAGAAAACAAGATCTTaacatacatatgaaaattcatacaggtgatgaattgaagtgtaaagaatgtgagtaCAAAACTCTTAGGAAACGTGACCTTAacacacatatgaaaattcatacaggtggtgaactgaagtgtaaagaatgtgactataaaactgtgtggaaatataattttaacacacatatgaaaattcatacgggtgatgaattgaagtgtaaggaatgtgattacaaaactcctaggaaagataaattaaaagaacatatgagaatacatacaggtgatgaatttaagtgtaaagagtgtgactaCAAGACTCCTTGGAAACATTTATCAAATcaacatatgagaattcatacaggagatgaattgaagtgtaaagaatTTTACATAATGGATATTGATTCCAATGAAAGTTGtccaataaaatctgaagtgattcTAACAGAAACATTTGCTGTTTGTGGAGAATTCAGAGATTATGGTAATAAAGAGTTGAAATCTGAGCCAGTAGATAtcgaagaatcttttaaatgcgAGGAAGAAAATAACTTTGCAGAGCATATGGATATATCTGCTGATCCTTTACAGCAATATGCTTCTAACGTTTGCAACTTTAGAAATACAGAAAAGGattttctaataaaacatttgaaaagtactaaaaacattcaacatttgtgtaaagaatgtaactttaaaactttattaGAATGTTCTATGACTGAACATTCAAGAATTCATCATGGAGTAGacagtaaatataattttaagatatCTCAAATTCCCCCTGCAACACTACAATTGGAAACTGCCAAAGGTGGTAATTACTATATTTGTAATCAGTGTGGTTTtaaaacacaatggaaaaataatctaaaaatacatataaataatcatatagGTAATAAGTATaggtgtaaggaatgtgattttgaAACAGTGTGGAAATGTAATCTTAACAGTCattcaaaaattcatacaggtgatgaattgaactgtaaggaatgtgactacaaaactacTAGGAAATGTATATTAAAAGAACATAccagaattcatactggtgataaattgaagtgtaaagaatgtgactacaaaactcctaGGAAACGTGATCTTAACactcatatgaaaattcatacaggtgataaatcgaagtgtaacgaatgtgattacaaaactgTTCGGAAACAAGATCTTAACactcatatgaaaattcatacaggcgatgaattgaagtgtaaggaatgtgattacaaaacccCTAGGAAACAGGATTTTAACAAACATATGAaacttcatacaggtgatgaattgaaatgtaaggaatgtgattacaaaacccCTAGGAAACAAGATTTTAAGacgcatatgaaaattcatacaggtgatgaattgaagtgtaaagaatgtgactataaaactgtgtggaaatgtaattttaacacgcatataaaaattcatacaggtgttgaattgaagtgtaaagaatgtgactacaaaactcctttgaaagattcattaaaaaaacacatgagaattcatacaggtgatgaattgaaatgtaaagaatgtagttataaaactgtgtggaaatCTAATTTTAACACacacatgaaaattcatacaggtaatgaattgaagtgtaaggaatgtgattacaaaactcCTAGGAAAGGTACATTAGAAGAACATACGAGAATTCATAGAGGTGATGAATtgaagtgtaaggaatgtgattacaaaactcccaagaaatataaattaaaagaacatatgagaattcatacaggtgatgaattcaAGTGTAAcaaatgtgactacaaaactccaTGGAAACATTTATCAAACcaacatatgagaattcatacaggtgatgaattcaAGTGTAACGAGTGTGACTACAAAGCTCTTAGGAAAGATTATCTTATCacgcatatgaaaattcatagagGTAATGAATTGAAATGTATGAAATGTGACTACAAAGCACCTACAGTATATGTATTAAAagaacatatgagaattcatactggtgatgaattgaaatgtaaggaatgtgactataaaactcCTAGAAAACGAGATCTTAacacacatatgaaaattcacacaggtgatgaatttaagtgtaggaaatgtgactataaaactgtgcggaaatataatcttaaaatacatatgaaaattcatactggcgatgaATTAACGTATAAGGAATTTAACTACAAAACTTCAATAGCTTCACATAGAAGTAAATCTTGGATTTATCTAATGGATGTCGAGTGCAATGAAAGTTGtccaataaaatctgaagtgactctaacagaaacattttctttttgtggagaaTACAGTAATTATGGGAATAGTGAATTGAAATCAGACCTGGTAGATATCACAGAATATTTTAAATGCAAGGACGAAAATAACCTTGTAGAGCATATCAATATATCTACTGATCATGTACAGCAATATACTTATAATGATTGCAACTTTAGAACAACAGAAAAGGATTGTCTGCTACAACTTCTGGAAAGTACTAAAAACGTTCAACATgggtgtaaagaatgtaactttaaaactcAACTGGAATGTTCCATgaatgaacatttaaaaattcatcatGAAGTAGatagtacatttaattttaagacaTCTCAAATTATCTCTGCACAACAATGGAAGCATAAACTAAAAGCAcatataaataatcatattggcaataagtataagtgtaaagaatgtgactataaaacaatgtggaaacatttattaaaccaacatatgagaattcatacaggtgatgaatggaagtgtaaagaatgtgactacaaaactcttCGGAAACATAATCTCAacacacatatgaaaattcatacaggtgatgagttGATGTGTAAAGAATGCGACTACAAAACTCCTtggaaacaattattaaaacaacataTGACAATTCACTTAGGTTATAAATTCAAGTGTAAGAAATGTCACCACAAAAGCTTTAGGAAACATGATCTTAacacacatatgaaaattcatactggtgatgaattgaagtgtaaagaatgtgattacaaaactccttggaaacaattattaaaacaacatatgataattcatacaggtgataaattcAACTGTACgaaatgtgactacaaaacttgTAGGAAACATGATCTTAACAGACATATGAacattcatacaggtgatgaattgaagtgtaaagaatgtgactacaaaacaccttGGAAACAATTACTAAAACAACATAtaagaattcatacaggtgatgaattgaagtgtaagaattgtgactacaaaactctcAAGAAACATGATCTTAacacacatataaaaattcatacaggtgatgaattgaagtgtaaggaatgtgactacaagaCTCCATGGAAAGATTCAGTGAAAAAACACATgcgaattcatacaggtgatgaattgaaatgtaaggaatgtgactataaaactgtgCAGACACAAAATCTTAAAAGACATATGGAAGTTCACACAGGTAATGAATCGAAGTGTAAAGAAATTGACTACAAAACTACCAAGAAAGTTTATTAA
- Protein Sequence
- MDVDCNESCPIKTEVILTETFSFCAEFRDYGNNKLKSDLADITEYFKCKDEDNLAEHMDPVQQYTCNDCNFRTTEKDCLMKHLKKCSMNVHLRIHHGVDSKCNLTPQIISATQQLKAAESGNYYICNQCGFKTQWKNKLKIHINNHIGNKYMCKECDFKTVWKSNLNNHMKIHTGDKLKCKVCDYKTPRKDKLEEHMRIHTGDKLKCKECVYKTARKQDLNIHMKIHTGDELKCKECEYKTLRKRDLNTHMKIHTGGELKCKECDYKTVWKYNFNTHMKIHTGDELKCKECDYKTPRKDKLKEHMRIHTGDEFKCKECDYKTPWKHLSNQHMRIHTGDELKCKEFYIMDIDSNESCPIKSEVILTETFAVCGEFRDYGNKELKSEPVDIEESFKCEEENNFAEHMDISADPLQQYASNVCNFRNTEKDFLIKHLKSTKNIQHLCKECNFKTLLECSMTEHSRIHHGVDSKYNFKISQIPPATLQLETAKGGNYYICNQCGFKTQWKNNLKIHINNHIGNKYRCKECDFETVWKCNLNSHSKIHTGDELNCKECDYKTTRKCILKEHTRIHTGDKLKCKECDYKTPRKRDLNTHMKIHTGDKSKCNECDYKTVRKQDLNTHMKIHTGDELKCKECDYKTPRKQDFNKHMKLHTGDELKCKECDYKTPRKQDFKTHMKIHTGDELKCKECDYKTVWKCNFNTHIKIHTGVELKCKECDYKTPLKDSLKKHMRIHTGDELKCKECSYKTVWKSNFNTHMKIHTGNELKCKECDYKTPRKGTLEEHTRIHRGDELKCKECDYKTPKKYKLKEHMRIHTGDEFKCNKCDYKTPWKHLSNQHMRIHTGDEFKCNECDYKALRKDYLITHMKIHRGNELKCMKCDYKAPTVYVLKEHMRIHTGDELKCKECDYKTPRKRDLNTHMKIHTGDEFKCRKCDYKTVRKYNLKIHMKIHTGDELTYKEFNYKTSIASHRSKSWIYLMDVECNESCPIKSEVTLTETFSFCGEYSNYGNSELKSDLVDITEYFKCKDENNLVEHINISTDHVQQYTYNDCNFRTTEKDCLLQLLESTKNVQHGCKECNFKTQLECSMNEHLKIHHEVDSTFNFKTSQIISAQQWKHKLKAHINNHIGNKYKCKECDYKTMWKHLLNQHMRIHTGDEWKCKECDYKTLRKHNLNTHMKIHTGDELMCKECDYKTPWKQLLKQHMTIHLGYKFKCKKCHHKSFRKHDLNTHMKIHTGDELKCKECDYKTPWKQLLKQHMIIHTGDKFNCTKCDYKTCRKHDLNRHMNIHTGDELKCKECDYKTPWKQLLKQHIRIHTGDELKCKNCDYKTLKKHDLNTHIKIHTGDELKCKECDYKTPWKDSVKKHMRIHTGDELKCKECDYKTVQTQNLKRHMEVHTGNESKCKEIDYKTTKKVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -