Lyun007373.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:11185848-11188105[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.1 15 6.4 0.3 1 23 91 113 91 113 0.97
2 19 0.00026 0.0037 17.8 1.6 1 23 141 163 141 163 0.97
3 19 0.14 2 9.2 2.5 1 23 168 190 168 190 0.98
4 19 0.0002 0.0028 18.1 1.0 1 23 195 217 195 217 0.99
5 19 0.00024 0.0035 17.8 2.3 1 23 222 244 222 244 0.99
6 19 2.8e-05 0.0004 20.8 1.9 1 23 249 271 249 271 0.99
7 19 2.1e-05 0.0003 21.2 2.0 1 23 276 298 276 298 0.99
8 19 1.9e-05 0.00026 21.4 1.7 1 23 303 325 303 325 0.99
9 19 0.0027 0.038 14.6 0.9 1 23 330 352 330 352 0.99
10 19 2.1e-05 0.0003 21.2 2.0 1 23 362 384 362 384 0.99
11 19 0.0024 0.034 14.7 1.2 1 23 389 411 389 411 0.99
12 19 0.0064 0.09 13.4 1.0 1 23 416 438 416 438 0.99
13 19 0.0064 0.09 13.4 1.0 1 23 443 465 443 465 0.99
14 19 0.069 0.98 10.1 1.2 1 23 470 492 470 492 0.98
15 19 3.2e-05 0.00045 20.6 1.3 1 23 497 519 497 519 0.99
16 19 0.0064 0.09 13.4 1.0 1 23 524 546 524 546 0.99
17 19 2e-05 0.00028 21.3 2.3 1 23 551 573 551 573 0.99
18 19 6.2e-06 8.8e-05 22.9 1.4 1 23 578 600 578 600 0.99
19 19 2.2 32 5.4 3.1 1 23 605 627 605 627 0.95

Sequence Information

Coding Sequence
atggatGTCGATTCAATAgcaaattgtgcaataaaatccgAAGTGATTATAAAAGAAACATTTGCGTTTTctggaaaatatgaagataGTGGTGAGGGTCAAGAACCGAAACCAGAACTAGCTGTTTATGaagaattgtttaaatgtaaagaagaaGATTCTGTAGAGCACATAGACATACACACTGCTCCGATGCAATGcattaatgaatgtaattttacgacaATGGAAAAGGAAATAGAACAtttggaaattattaaaaatgttcaatattcttGCGAGGAATGTAACTTTATAACACAGTTAGAATCTTCCATAAAagagcatttaaaaattcataatggaGTAGATGGTCAATATATTactgaagaatgtaattttaagatgGCAGAGCTCAAAACTACAAGAATTTGCAAtgaatacatttgtaatgaatgtactTATAAGACATTTGttaaaagtaatctaaagagacatataaaaattcataaaggtgatgaatataattgtaaagaatgtgattataaaactgcatGGAAAAATCATCTAAGGGAACATACCAAAATTCATACacgcgatgaatataagtgtaaagaatgtgattataaaacagtgttgaaaaaacaactaaatgcgcacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggAAGTATcgactaaaggaacacatcaaaattcatacaggtgatgaatataggtgtaaagaatgtgattataaaactgtccggaaatatcaactaaaggaacacatcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcataaaggtgatgaatataagtgtaaagaatgtgattacaaaactgTGCGGCaatatcaactaaaggaacacatcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaactgtatggaaaaatcaactaaaggaacacatcagaattcatacaggtgatgaatataagtgtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtatggaaaaatcaactaaaggaacacatcagaatgcatacaggtgatgaatataaatgtaaagaatgtgattataaaactgtatggaaaaatcaactaaaggaacacatcaaaattcatacaggtgataaatataagtgtaaagaatgtgattataaaactgtatggaaaaatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtatggaaaaatagactaaaggaacacatcaaaattcatacaggtgataaatataaatgtaaagaatgtgattataaagctGTGCAgaaatatcaactaaaggaacacatcagaatgcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtatggaaaaatcaactaaaggaacacatcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaactgggcggaaatatcaactaaagcaacacatcagaattcatacaggtgatgaatataagtgtaacgaatgtgattataaaactgcacGGAAATATCagctaaaggaacacatcagaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtgtggaaaaattgtataaagaaaCATGTTAatattcatacaggtgacaaaatATAA
Protein Sequence
MDVDSIANCAIKSEVIIKETFAFSGKYEDSGEGQEPKPELAVYEELFKCKEEDSVEHIDIHTAPMQCINECNFTTMEKEIEHLEIIKNVQYSCEECNFITQLESSIKEHLKIHNGVDGQYITEECNFKMAELKTTRICNEYICNECTYKTFVKSNLKRHIKIHKGDEYNCKECDYKTAWKNHLREHTKIHTRDEYKCKECDYKTVLKKQLNAHIKIHTGDEYKCKECDYKTVRKYRLKEHIKIHTGDEYRCKECDYKTVRKYQLKEHIKIHTGNEYKCKECDYKTVRKYQLKEHIKIHKGDEYKCKECDYKTVRQYQLKEHIKIHTGNEYKCKECDYKTVWKNQLKEHIRIHTGDEYKCDEYKCKECDYKTVRKYQLKEHIKIHTGDEYKCKECDYKTVWKNQLKEHIRMHTGDEYKCKECDYKTVWKNQLKEHIKIHTGDKYKCKECDYKTVWKNQLKEHIKIHTGDEYKCKECDYKTVWKNRLKEHIKIHTGDKYKCKECDYKAVQKYQLKEHIRMHTGDEYKCKECDYKTVWKNQLKEHIKIHTGNEYKCKECDYKTGRKYQLKQHIRIHTGDEYKCNECDYKTARKYQLKEHIRIHTGDEYKCKECDYKTVWKNCIKKHVNIHTGDKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-