Lyun007078.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:2198086-2201013[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.031 0.43 11.2 0.1 1 22 66 87 66 87 0.97
2 30 0.34 4.8 8.0 0.6 1 23 152 174 152 174 0.97
3 30 0.00047 0.0067 16.9 3.1 1 23 179 201 179 201 0.99
4 30 0.00025 0.0036 17.8 3.0 1 23 206 228 206 228 0.99
5 30 0.056 0.8 10.4 2.1 1 23 233 255 233 255 0.98
6 30 0.098 1.4 9.7 0.6 1 23 260 282 260 282 0.97
7 30 0.0033 0.047 14.3 1.7 1 23 287 309 287 309 0.99
8 30 0.07 0.99 10.1 0.9 1 23 314 336 314 336 0.98
9 30 0.00027 0.0038 17.7 2.5 1 23 341 363 341 363 0.99
10 30 0.067 0.95 10.2 2.7 1 23 368 390 368 390 0.98
11 30 8.4 1.2e+02 3.6 1.1 1 23 395 417 395 417 0.86
12 30 0.034 0.48 11.1 0.9 1 23 422 444 422 444 0.97
13 30 0.00021 0.003 18.0 3.1 1 23 449 471 449 471 0.99
14 30 0.17 2.5 8.9 1.7 1 23 476 498 476 498 0.98
15 30 0.04 0.57 10.9 0.7 1 23 503 525 503 525 0.98
16 30 0.0048 0.068 13.8 1.5 1 23 530 552 530 552 0.98
17 30 0.086 1.2 9.8 1.2 1 23 557 579 557 579 0.98
18 30 0.00027 0.0038 17.7 2.5 1 23 584 606 584 606 0.99
19 30 0.067 0.95 10.2 2.7 1 23 611 633 611 633 0.98
20 30 8.4 1.2e+02 3.6 1.1 1 23 638 660 638 660 0.86
21 30 0.034 0.48 11.1 0.9 1 23 665 687 665 687 0.97
22 30 0.00021 0.003 18.0 3.1 1 23 692 714 692 714 0.99
23 30 0.04 0.57 10.9 0.7 1 23 719 741 719 741 0.98
24 30 0.0048 0.068 13.8 1.5 1 23 746 768 746 768 0.98
25 30 0.092 1.3 9.7 0.7 1 23 773 795 773 795 0.97
26 30 3.3e-05 0.00046 20.6 0.9 1 23 800 822 800 822 0.99
27 30 0.53 7.6 7.3 4.5 1 23 827 849 827 849 0.98
28 30 0.002 0.028 15.0 5.0 1 23 854 876 854 876 0.99
29 30 9.8e-05 0.0014 19.1 1.5 1 23 881 903 881 903 0.99
30 30 0.0015 0.022 15.3 1.2 1 23 908 930 908 930 0.98

Sequence Information

Coding Sequence
ATGGACGCTGCATATAATGAAAGTTACccaataaaatcagaagtgattgtaaatgaaacattttcctaTTGTGGAAAATATGGAGattatggGAATGTACAATTGAAAACGGAGCCGGTAGATTTTGAAGAATCCTTTAAAGGCAAAGAAGATAATTTTGAAGAGCACACCTCCCATAGTATACCCGTCCATCAATATGTTTGTaacgaatgtaattttattgccACCGAGAAAGATTCTTTAATAGAACATATGAAAACTATCAAGAATGAATATTTTTGCAAGaaatgtaactttacaacccGGTTAGAATGTTCTATAAAACAGCACTTCAAGATTCATAACAGGGTTGGTTCACcacatttaaaaactacaaaaagtgGTGacgaatgtgattacaaaacttCACAGAAATGGACTATgaagaaacagaaaattcatactggtgatcaatataagtgtaccgggtgtgattttaaaacagtatggaaacagagtctaaaggaacatgcaaaaattcatactaataatcaatataagtgtaacgaatgtgattataaaacaattaggAAACacagtctaaaggaacatgtgaaaattcatagtgatgatgaatataagtgtaaagagtgtgattataaaacaatacacaaaaGAAATCTAGTGcaacacataaaaattcatattggtgatcaatataaatgtaatgaatgtgattataaaacaatatggaaacagcatctaaaagaacatgtaaaagttcatactggtgaacaatataagtgtaaggaatgtgattatagaacaatatggaaacaggatctaaaagaacatgtaaaAGCTCATACTGGTGAACaatataagtgcaaggaatgtgattataaaacaatacgaaAACAAAGGCTAacggaacatgtaaaaattcatactggtgatgaatataagtgcaaggaatgtgattacaaaacaatacGGAAACAAAGGATAATTGAACATGTAAAAGTTCATAGCGGTGATCAatacaagtgtaaggaatgtgattacaaaacagtggaGAAACATAATCTAGtgaaacacataaaaattcatactggtgatgaatataagtgcaaggaatgtgattataaaacaatatggaaacatagtctaacacagcatgtgaaaattcacacttgtgatgaatataagtgtaccaagtgtgattttaaaacaatatggaaacagagTATAAAGGAACATgcgaaaattcatacaggtaatcaTTATAAGTGTatcgaatgtgattataaaacaattaggaaacagagtctaaaggaacacgtaaaaattcatagtgatgatgagtataagtgtaaagagtgtgattataaaacaatacacaaaaaaaatctagtgcaacacataaaaattcatattggtgatcaatataagtgtaaggaatgtgattttaaaacatattgGAAACGGGatctaaaagaacatgtaaaAGTTCATACTGGCgaacaatataagtgtaaggaatgtgattatagaacaATATGGAAACAGGATCTAAAAGATCATGTAAAAGTTCATACTGGCgaacaatataagtgtaaggaatgtgattataaaacaatacgaaAACAAAGACTAatggaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattacaaaacaatacGGAAACAAAGGATAatggaacatgtaaaaattcatagtggtgatcaatataagtgtaaggaatgtgattacaaaacagtggaGAAACATAATCTAGtgaaacacataaaaattcatactggtgatgaatataagtgcaaggaatgtgattataaaacaatatggaaacatagtctaacacagcatgtgaaaattcacacttgtgatgaatataagtgtaccaagtgtgattttaaaacaatatggaaacagagTATAAAGGAACATgcgaaaattcatacaggtaatcaTTATAAGTGTatcgaatgtgattataaaacaattaggaaacagagtctaaaggaacacgtaaaaattcatagtgatgatgagtataagtgtaaagagtgtgattataaaacaatacacaaaaaaaatctagtgcaacacataaaaattcatattggtgatcaatataagtgtaaggaatgtgattatagaacaATATGGAAACAGGATCTAAAAGATCATGTAAAAGTTCATACTGGTgaacaatataagtgtaaggaatgtgattataaaacaatacgaaAACAAAGGCTAatggaacatgtaaaaattcatactggtgatgaatataagtgtgaggaATGCGATTACAAAACAATACGGAAACAAAGGATAatggaacatgtaaaaattcatagtggtgatcaatataagtgtgaggaatgtgattacaaaacagtacaGAAACGTAATCTAGtgaaacacataaaaattcatactggtgatcttcataagtgcaaggaatgcgattataaaacaatatggaaacatagtctaacacagcatgtgaaaattcacacttgtgatgaatataagtgtacagaatgcaattataaaacaatacgaaAACATCGTCTGACAcaacacatgaaaattcatactggtgatgaatataaatgcactgagtgtaattataaaacagtacggaaagATACTCTCATGcaacacataaaaattcatactggtgataaatataagtgtaagaactgtgattttaaaacaatacgaaaacaaaatttagtgcaacACATAATACTTCATAGTAACTTTGaagtagagaaaaaaatgcACACATACTTGTAA
Protein Sequence
MDAAYNESYPIKSEVIVNETFSYCGKYGDYGNVQLKTEPVDFEESFKGKEDNFEEHTSHSIPVHQYVCNECNFIATEKDSLIEHMKTIKNEYFCKKCNFTTRLECSIKQHFKIHNRVGSPHLKTTKSGDECDYKTSQKWTMKKQKIHTGDQYKCTGCDFKTVWKQSLKEHAKIHTNNQYKCNECDYKTIRKHSLKEHVKIHSDDEYKCKECDYKTIHKRNLVQHIKIHIGDQYKCNECDYKTIWKQHLKEHVKVHTGEQYKCKECDYRTIWKQDLKEHVKAHTGEQYKCKECDYKTIRKQRLTEHVKIHTGDEYKCKECDYKTIRKQRIIEHVKVHSGDQYKCKECDYKTVEKHNLVKHIKIHTGDEYKCKECDYKTIWKHSLTQHVKIHTCDEYKCTKCDFKTIWKQSIKEHAKIHTGNHYKCIECDYKTIRKQSLKEHVKIHSDDEYKCKECDYKTIHKKNLVQHIKIHIGDQYKCKECDFKTYWKRDLKEHVKVHTGEQYKCKECDYRTIWKQDLKDHVKVHTGEQYKCKECDYKTIRKQRLMEHVKIHTGDEYKCKECDYKTIRKQRIMEHVKIHSGDQYKCKECDYKTVEKHNLVKHIKIHTGDEYKCKECDYKTIWKHSLTQHVKIHTCDEYKCTKCDFKTIWKQSIKEHAKIHTGNHYKCIECDYKTIRKQSLKEHVKIHSDDEYKCKECDYKTIHKKNLVQHIKIHIGDQYKCKECDYRTIWKQDLKDHVKVHTGEQYKCKECDYKTIRKQRLMEHVKIHTGDEYKCEECDYKTIRKQRIMEHVKIHSGDQYKCEECDYKTVQKRNLVKHIKIHTGDLHKCKECDYKTIWKHSLTQHVKIHTCDEYKCTECNYKTIRKHRLTQHMKIHTGDEYKCTECNYKTVRKDTLMQHIKIHTGDKYKCKNCDFKTIRKQNLVQHIILHSNFEVEKKMHTYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-