Lyun014081.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002062.1:331181-335295[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 0.27 3.9 8.3 3.0 1 23 151 173 151 173 0.98
2 37 0.21 3 8.6 2.6 1 23 178 200 178 200 0.98
3 37 0.0025 0.035 14.7 2.2 1 23 205 227 205 227 0.99
4 37 0.06 0.85 10.3 0.8 1 23 232 254 232 254 0.98
5 37 0.39 5.5 7.8 3.0 1 23 259 281 259 281 0.98
6 37 0.00059 0.0084 16.6 1.9 1 23 286 308 286 308 0.99
7 37 0.0041 0.058 14.0 2.9 1 23 313 335 313 335 0.99
8 37 0.00027 0.0038 17.7 3.8 1 23 340 362 340 362 0.99
9 37 0.3 4.2 8.1 2.5 1 23 367 389 367 389 0.98
10 37 0.0063 0.089 13.4 3.0 1 23 394 416 394 416 0.99
11 37 0.0031 0.044 14.4 2.5 1 23 421 443 421 443 0.99
12 37 0.27 3.9 8.3 3.0 1 23 448 470 448 470 0.98
13 37 0.0041 0.058 14.0 2.9 1 23 475 497 475 497 0.99
14 37 0.0031 0.044 14.4 2.5 1 23 502 524 502 524 0.99
15 37 0.73 10 6.9 0.8 1 23 529 551 529 551 0.95
16 37 0.00059 0.0084 16.6 1.9 1 23 556 578 556 578 0.99
17 37 0.27 3.9 8.3 3.0 1 23 591 613 591 613 0.98
18 37 0.0041 0.057 14.0 1.9 1 23 618 640 618 640 0.99
19 37 0.049 0.69 10.6 0.8 1 23 645 667 645 667 0.98
20 37 0.00048 0.0068 16.9 1.6 1 23 672 694 672 694 0.99
21 37 0.00027 0.0038 17.7 3.8 1 23 699 721 699 721 0.99
22 37 0.00019 0.0026 18.2 2.7 1 23 726 748 726 748 0.99
23 37 0.0063 0.089 13.4 3.0 1 23 753 775 753 775 0.99
24 37 0.065 0.92 10.2 2.1 1 23 780 802 780 802 0.98
25 37 0.0031 0.044 14.4 2.5 1 23 807 829 807 829 0.99
26 37 0.058 0.82 10.4 2.5 1 23 834 856 834 856 0.98
27 37 0.67 9.4 7.0 0.6 1 23 861 883 861 883 0.95
28 37 0.014 0.2 12.3 4.0 1 23 888 910 888 910 0.99
29 37 0.67 9.4 7.0 0.6 1 23 915 937 915 937 0.95
30 37 0.002 0.028 15.0 3.0 1 23 942 964 942 964 0.99
31 37 0.5 7.1 7.4 0.8 1 23 969 991 969 991 0.95
32 37 0.5 7.1 7.4 0.8 1 23 996 1018 996 1018 0.95
33 37 0.065 0.92 10.2 2.1 1 23 1023 1045 1023 1045 0.98
34 37 0.0031 0.044 14.4 2.5 1 23 1050 1072 1050 1072 0.99
35 37 0.5 7.1 7.4 0.8 1 23 1077 1099 1077 1099 0.95
36 37 0.5 7.1 7.4 0.8 1 23 1104 1126 1104 1126 0.95
37 37 0.06 0.84 10.3 3.5 1 23 1131 1153 1131 1153 0.99

Sequence Information

Coding Sequence
ATGGATATTAATTCTACTGAAAGTTGTACAATAAAATCcgaaattattttaacagaaacattttgtgGAAGCTACGAAGattgtggTAATGAAGAACTGAAAAAGGAGCCAGTAGATTACAAAGAATTGATTAAGTGTAAGGAGAAGATGATCCTGCAGAGCACATGGATACATCTGCTGCCCcaGCATGGTAACTTTTCAAACTTCAATTTGGAATGTTTCataaaaaagcatttgaaagTTCACAAGGGTGTAGATAATACTTATATTACTAAGGAACGTAATTTTAAGACGCCACAGAGTTTCTCTACAGCACCACATGTAAAAACGTCAGAAGTGAtgaatacatttgtaatgaatgtgaggaatataagtgtaaagaatgtgattataaaacagtgcggaaaacatagtttaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacaatgtggaaacatagtttaaaggaacatgttaaaattcatacaggtgaggaatataagtgtaacgattgtgattataaaacaatgtggaaacatagtttaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtatggaaatataatctaaagaaacatctcaaaattcatacaggggaggaatataagtgtaaagaatgtgattataaaacagtgtggcaacaaagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatgtggaaacatagtttaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgcggaaaagtaggctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacatcagcgaaacatagtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaacgaatgtgattataaaacatcgcgtaaacatagtctaaaggaacatgttaaaattcatacaggtgaacaatataagtgtaacgaatgtgattataaaacaatgtggaaacatagtttaaaggaacatgtcaaaattcatacaggcgaggaatataagtgtaatgaatgtaattataaaacatcggcgaaacatagtctaaaggaacatgtcaaaattcatacaaatgatgaatataagtgtaatgaatgtgattataaaacatcagcgaaacatagtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacaatgtggaaacatagtttaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacatcagcgaaacatagtctaaaggaacatgtcaaaattcatacaaatgatgaatataagtgtaacgaatgtgattataaaacatcagcgaaacatagtctaaaggaacatgtcaaaattcatacaggtgaacaatataagtgtaaagaatgtgattataaaacagtatggaaacaaagtgtaaaggaacatgtcaaaattcatacaggtgaacaatataagtgtaaagaatgtgattataaaacagtgcggaaaagtaggctaaaggaacatgttaaaattcatacaggggaggaatataagtgtaaagaatgtgaacaatataagtgtaaagattgtgattataaaacaatgtggaaacatagtttaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtatggaaatataatctaaagaaacatgtcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattataaaacagtgtggaaaaaacttctaaagcaacatgtcaaaattcatacaggtgaggaatataagtgtaacgaatgtgattataaaacagtgcggaaaagtaggctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaacgaatgtgattataaaacatcgcgtaaacatagtctaaaggaacatgttaaaattcatacaggtgaacaatataagtgtaacgaatgcggttataaaacagtgcggaaacaTAGTTTAaaggaacacgtcaaaattcatacaggcgaggaatataagtgtaatgaatgtaattataaaacatcggcgaaacatagtctaaaggaacatgtcaaaattcatacaaatgatgaatataagtgtaatgaatgtgattataaaacagtatggaaacatAGTCttaaggaacatgtcaaaattcataccggtgaggaatataagtgtaacgaatgtgattataaaacatcagcgaaacatagtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacagtatggaaacatagtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaacgaatgtgattataaaacagtatggaaacaaagtgtaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaataaatgtaattataaaacatcagCGAAACatagtttaaaggaacatgtcaaaattcatacaaatgatgaatataagtgtaatgaatgtgattataaaacagtatggaaacaaagtgtaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacatcagggaaacatagtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacagtatggaaacaaagtgtaaaggaacatgtcaaaattcataccggtgcggaatataagtgtaaagattgtgactataaaacagtatggaaacaaagtgtaaaggaacatgtcaaaattcatacaaatgatgaatataagtgtaatgaatgtgattataaaacagtatggaaacatAGTCttaaggaacatgtcaaaattcataccggtgaggaatataagtgtaacgaatgtgattataaaacatcagcgaaacatagtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacagtatggaaacaaagtgtaaaggaacatgtcaaaattcataccggtgaggaatataagtgtaaagattgtgactataaaacagtatggaaacaaagtgtaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtaattataaaacagtgtggaaaaaacaactaaaatcaCATTTGAAAAAACATATAGATGATGTACATATCTGA
Protein Sequence
MDINSTESCTIKSEIILTETFCGSYEDCGNEELKKEPVDYKELIKCKEKMILQSTWIHLLPQHGNFSNFNLECFIKKHLKVHKGVDNTYITKERNFKTPQSFSTAPHVKTSEVMNTFVMNVRNISVKNVIIKQCGKHSLKEHVKIHTGEEYKCKDCDYKTMWKHSLKEHVKIHTGEEYKCNDCDYKTMWKHSLKEHVKIHTGEEYKCKECDYKTVWKYNLKKHLKIHTGEEYKCKECDYKTVWQQSLKEHVKIHTGDEYKCKECDYKTMWKHSLKEHVKIHTGEEYKCKECDYKTVRKSRLKEHVKIHTGEEYKCKECDYKTSAKHSLKEHVKIHTGEEYKCNECDYKTSRKHSLKEHVKIHTGEQYKCNECDYKTMWKHSLKEHVKIHTGEEYKCNECNYKTSAKHSLKEHVKIHTNDEYKCNECDYKTSAKHSLKEHVKIHTGEEYKCKDCDYKTMWKHSLKEHVKIHTGEEYKCKECDYKTSAKHSLKEHVKIHTNDEYKCNECDYKTSAKHSLKEHVKIHTGEQYKCKECDYKTVWKQSVKEHVKIHTGEQYKCKECDYKTVRKSRLKEHVKIHTGEEYKCKECEQYKCKDCDYKTMWKHSLKEHVKIHTGEEYKCKECDYKTVWKYNLKKHVKIHTGDEYKCEECDYKTVWKKLLKQHVKIHTGEEYKCNECDYKTVRKSRLKEHVKIHTGEEYKCNECDYKTSRKHSLKEHVKIHTGEQYKCNECGYKTVRKHSLKEHVKIHTGEEYKCNECNYKTSAKHSLKEHVKIHTNDEYKCNECDYKTVWKHSLKEHVKIHTGEEYKCNECDYKTSAKHSLKEHVKIHTGEEYKCKDCDYKTVWKHSLKEHVKIHTGEEYKCNECDYKTVWKQSVKEHVKIHTGEEYKCNKCNYKTSAKHSLKEHVKIHTNDEYKCNECDYKTVWKQSVKEHVKIHTGEEYKCKECDYKTSGKHSLKEHVKIHTGEEYKCKDCDYKTVWKQSVKEHVKIHTGAEYKCKDCDYKTVWKQSVKEHVKIHTNDEYKCNECDYKTVWKHSLKEHVKIHTGEEYKCNECDYKTSAKHSLKEHVKIHTGEEYKCKDCDYKTVWKQSVKEHVKIHTGEEYKCKDCDYKTVWKQSVKEHVKIHTGDEYKCKECNYKTVWKKQLKSHLKKHIDDVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-