Lyun002261.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
ECU03_0790
Assembly
GCA_013368075.1
Location
JABVZV010000335.1:10233680-10258861[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.7 24 5.7 0.6 1 23 91 113 91 113 0.97
2 21 0.00085 0.012 16.1 1.0 1 23 148 170 148 170 0.97
3 21 0.028 0.39 11.4 1.2 1 23 180 202 180 202 0.97
4 21 0.053 0.74 10.5 0.6 1 23 207 229 207 229 0.98
5 21 0.0013 0.018 15.6 0.7 1 23 234 256 234 256 0.99
6 21 0.00024 0.0033 17.9 2.1 1 23 261 283 261 283 0.99
7 21 0.00082 0.012 16.2 0.8 1 23 288 310 288 310 0.98
8 21 0.00016 0.0022 18.5 2.2 1 23 315 337 315 337 0.99
9 21 9.5e-05 0.0014 19.1 2.4 1 23 342 364 342 364 0.99
10 21 0.021 0.29 11.8 4.3 1 23 369 391 369 391 0.98
11 21 1.3 19 6.1 0.2 1 23 396 418 396 418 0.97
12 21 0.0003 0.0042 17.6 2.5 1 23 423 445 423 445 0.99
13 21 0.00057 0.0081 16.7 2.0 1 23 450 472 450 472 0.99
14 21 0.00016 0.0023 18.4 1.8 1 23 477 499 477 499 0.99
15 21 0.00032 0.0045 17.5 1.0 1 23 504 526 504 526 0.99
16 21 0.034 0.48 11.1 1.1 1 23 531 553 531 553 0.97
17 21 1.8e-05 0.00026 21.4 0.5 1 23 785 807 785 807 0.99
18 21 0.0021 0.029 14.9 2.0 1 23 813 837 813 837 0.97
19 21 0.0027 0.039 14.5 3.1 1 23 850 872 850 872 0.98
20 21 0.00023 0.0032 17.9 3.7 1 23 878 902 878 902 0.98
21 21 5e-06 7.1e-05 23.2 1.1 1 23 916 938 916 938 0.99

Sequence Information

Coding Sequence
ATGGATGTTGTTTCAGTAGAAAATGTTGCAATCAAATccgaagtgattttaacagaaacattttcgtTTTCTGCAAAATACGAAGATTGTGAGAGTCAAGAACTGAAAACAGAACCAACACTTTATGaagatttgtttaaatgtaaagaagATTCTGTAGAGCACATTGATATACACGCTGCTCCCacacaatgtattaatgaatgtaattttacgacaATAGAAAAGGATTGTCTCACAGAACATTTGaatattactaaaaatgttcaatattcttGCAAGGAATGTAACTTTATAACGCAGTTAGAATATTCCATAAAAGAGCATATAAAAATTCACAATGGAGTAGATGGTCAATATATTACTgaggaatgtaattttaagatgcCAAGGATTTTGTCTTTGATACCAGAACTCAAAACTCCAAGAATTCGcaacaaatacatttgtaatgaatgtaattatactacATTCATCAAAAGTAATCTAAGAAGACATATAACCATTCATAAAGGTGATGACTATATtcgtgacaaatataagtgtgaagaatgtgattataaaactttgCAGAAAAATCTACTGaagcaacatgttaaaattcatacaggtcaCAAATATGAGTgtcaagaatgtgattataaaacagtgtggaaaaatcaactgaagcaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtttggaacagtaatctaaaggaacacattaaaattcatacaggtgatgaatttaaatgtaaagaatgtaattataaaacagtgttgcaaagtagtctaaagaaacatatcaaaatCCATACAGGTCACAAATATGAGTGtcaagaatgtaattataaaacagtacggaaaaatgaactaaaagagcatgttaaaattcataccgatgacgaatataagtgtaaagaatgtgattataaaacagtgcgaaaaaatcaactgaagcaacatgtcaaaattcatacagatgatgaatataaatgtaaagattgtgattataaatctGTGCGGAAATATCAACtgaagcaacatgtcaaaattcatacaggtaatgaatataaatgtaaagaatgtgattataaaacagtacggaaatgtcgactaaaggaacatgtcaaaattcatacaggtgatgaatataattgTGCagtatgtgattataaaactgtgtggaaaagTCGACTacaggaacatgtcaaaattcatacaggcgataaatataagtgtaaagaatgtgattataaaacagtgcggaaaaatcaactaaaggagCATACCAAGATTCATACTGGCGAtacatataagtgtaaagaatgtgattataaaacagtgcgcaAAGATCgactaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaaaatCAACTGaatcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgcccttataaaacggtgcggaaaaatgaactaaaagagcatgtcaaaattcataccggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaataatctaaaacaaCATGTCACAATTCATACAGTGATAGGAGACACTACTGACTGCCCAACATGTGCCGGTAACACACaaatcaatttgaataaaatggaCATAGCCTTAAAATTTATAGAGAAtggtaaaaatacaaataaaataaagaatgaaattaaaacagaaaaacaaattgACGTTGGCCTAGAAAGTGTTGAAGTTAATAATATGTCATTCAAAGAACAGATTAATGAGGTTTGTCGCACTTGTCTAACGAAGTACTCAAATTTTCAATCAATATTTGAGAAGGACTTGCATAATATGTTAATGGAGTTTACATCGGTgaagATTATTGAGGGGGATGGGTTATCTTCGATCATCTGTCAAGATTGTGTTCTTCAGATATATCAGACATATATATTTAAGCAACGAGTGGAACATTCAGATAATGTTCTAAAGCAAGATTGTTTTTATATAGATAGAGAAGGAGAAATAAATGAACCTTCGAAAAAGTATTCAGAAAATGTTACTAGTGTGAGAGTTGATTGTGATCAATCATTAAGCAATCAATTAGATATTGATATAGTTGAAAATGATTATTTAGAAGACATCAGCAATACTGAAATTATAAATGCAGAAAAGGAGAATATGATGACAACAAccaaagcaaaagaaaatattcaaattgaagaaaatttaataggaAGCAACAAGATTGACTGTgggaaagcaaaaaaaaactatgtttgTTCTATTTGTGGGAAAAGATTGTATAAACCACGTGGATTAAAGGATCACATGAGAACTCATGCTAAAGAAAAGCCATACAAATGTGACATTTCTAGCTGTAACAAAAGTTTTGTAACAATCAAGAACTTAAAATACCATAAAAGACTTCATGGAGGAAGTTATAAAATGAaggataaaaatacaaaatatgtctGTACCGTTTGTGCGATTAAGTGTACTAAACTATCTCACTTAAAAattcatatgaaaattcacataGGTGAGAAACCGTTCAAGTGTGAAATTTCCAACTGCAGCAAGAGTTTTAAATCCAGCAGAAAATTAAATCGTCATAAAAGAAGTCATACAGgaagcaacaaaattgaccctgtgaaagaaaaaaaatatgtttgttcTATTTGTGGAAAAAAATTGTCTAAACCACATGGATTAAAGGATCATATGAGAACTCATACTGAAGAAAAACCATAG
Protein Sequence
MDVVSVENVAIKSEVILTETFSFSAKYEDCESQELKTEPTLYEDLFKCKEDSVEHIDIHAAPTQCINECNFTTIEKDCLTEHLNITKNVQYSCKECNFITQLEYSIKEHIKIHNGVDGQYITEECNFKMPRILSLIPELKTPRIRNKYICNECNYTTFIKSNLRRHITIHKGDDYIRDKYKCEECDYKTLQKNLLKQHVKIHTGHKYECQECDYKTVWKNQLKQHVKIHTGDEYKCKECDYKTVWNSNLKEHIKIHTGDEFKCKECNYKTVLQSSLKKHIKIHTGHKYECQECNYKTVRKNELKEHVKIHTDDEYKCKECDYKTVRKNQLKQHVKIHTDDEYKCKDCDYKSVRKYQLKQHVKIHTGNEYKCKECDYKTVRKCRLKEHVKIHTGDEYNCAVCDYKTVWKSRLQEHVKIHTGDKYKCKECDYKTVRKNQLKEHTKIHTGDTYKCKECDYKTVRKDRLKQHVKIHTGDEYKCKECDYKTVRKNQLNQHVKIHTGDEYKCKECPYKTVRKNELKEHVKIHTGDEYKCKECDYKTVWKNNLKQHVTIHTVIGDTTDCPTCAGNTQINLNKMDIALKFIENGKNTNKIKNEIKTEKQIDVGLESVEVNNMSFKEQINEVCRTCLTKYSNFQSIFEKDLHNMLMEFTSVKIIEGDGLSSIICQDCVLQIYQTYIFKQRVEHSDNVLKQDCFYIDREGEINEPSKKYSENVTSVRVDCDQSLSNQLDIDIVENDYLEDISNTEIINAEKENMMTTTKAKENIQIEENLIGSNKIDCGKAKKNYVCSICGKRLYKPRGLKDHMRTHAKEKPYKCDISSCNKSFVTIKNLKYHKRLHGGSYKMKDKNTKYVCTVCAIKCTKLSHLKIHMKIHIGEKPFKCEISNCSKSFKSSRKLNRHKRSHTGSNKIDPVKEKKYVCSICGKKLSKPHGLKDHMRTHTEEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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