Lyun007276.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:8572085-8577381[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 2.5 36 5.2 2.7 1 23 9 31 9 31 0.97
2 29 5.5e-05 0.00079 19.9 2.0 1 23 36 58 36 58 0.99
3 29 0.4 5.7 7.7 1.9 1 23 63 85 63 85 0.98
4 29 0.0086 0.12 13.0 2.0 1 23 90 112 90 112 0.98
5 29 0.0078 0.11 13.1 1.0 1 23 117 139 117 139 0.98
6 29 6.1e-05 0.00086 19.7 1.1 1 23 144 166 144 166 0.98
7 29 1.8 25 5.7 0.6 1 12 171 182 171 188 0.81
8 29 5.5e-05 0.00079 19.9 2.0 1 23 226 248 226 248 0.99
9 29 0.4 5.7 7.7 1.9 1 23 253 275 253 275 0.98
10 29 0.0038 0.053 14.1 1.7 1 23 280 302 280 302 0.99
11 29 0.005 0.07 13.7 1.0 1 23 307 329 307 329 0.98
12 29 6.1e-05 0.00086 19.7 1.1 1 23 334 356 334 356 0.98
13 29 2.7 38 5.1 0.3 1 10 361 370 361 377 0.86
14 29 5.5e-05 0.00079 19.9 2.0 1 23 434 456 434 456 0.99
15 29 0.0038 0.053 14.1 1.7 1 23 469 491 469 491 0.99
16 29 0.15 2.1 9.1 2.4 1 23 496 518 496 518 0.98
17 29 5.1e-05 0.00072 20.0 1.5 1 23 523 545 523 545 0.99
18 29 0.23 3.2 8.5 0.3 1 23 550 572 550 572 0.95
19 29 0.0033 0.047 14.3 0.9 1 23 623 645 623 645 0.98
20 29 5.5e-05 0.00079 19.9 2.0 1 23 650 672 650 672 0.99
21 29 0.45 6.4 7.6 1.2 1 23 677 699 677 699 0.98
22 29 0.0038 0.053 14.1 1.7 1 23 704 726 704 726 0.99
23 29 0.0023 0.033 14.8 1.3 1 23 731 753 731 753 0.99
24 29 0.00017 0.0024 18.4 1.2 1 23 758 780 758 780 0.98
25 29 0.0019 0.026 15.1 1.2 1 23 785 807 785 807 0.99
26 29 5.5e-05 0.00079 19.9 2.0 1 23 812 834 812 834 0.99
27 29 6.8 96 3.9 0.9 1 23 839 861 839 861 0.91
28 29 0.0038 0.053 14.1 1.7 1 23 866 888 866 888 0.99
29 29 0.23 3.2 8.5 0.3 1 23 920 942 920 942 0.95

Sequence Information

Coding Sequence
atgaaaattcatactactgccaaatacaagtgtaaagagtgtgagtATAAATCAGTGTGGAAgaattgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattttaagacTGTACGGAAAAATAATCTAcagcaacatatcaaaattcatactggtgacaaatataagtgtaatgagtGTGAGTacaaaacagtatggaaagattgtctaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattttaaaactgtatggaaaagtaatctaaagcaacatctCAAACTTCATAgaggtgatgaatataattgtaaagaatgcgattataaaactgtatggaaaagcaatctaaagcaacatgtcaaaatacatacaggcgatgaatataattgtaaagaatgcgattataaaactgtacggaaaagtgatctaatgcgacatgtcaaaattcatgcgggtgacgaatataagtgtaaagattgtggttataaaacagtgaagaatataagtgtaaagaatgtgattataagacgGTATGGAAATATTGTGCATaggaaaatgcaaaaattaatgcaacatatgaaaattcatactactgcaaatacaagtgtaaagagtgtgagtgaagaatataagtgtaaagaatgtgattttaaaactgtacggaaaaataatctacagcaacatatcaaaattcatactggtgacaaatataagtgtaatgagtGTGAGTacaaaacagtatggaaagattgtctaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattttaaaactgtatggaaaagtaatttaaagcaacatctcaaaattcatagagGCGATGAATATAgttgtaaagaatgcgattataaaactgtatggaaaagtaatctaaagcaacatgtcaaaatacatacaggcgatgaatataattgtaaagaatgcgattataaaactgtacggaaaagtgatctaatgcgacatgtcaaaattcatgcgggtgatgaatataagtgtaaagattgtggttataaaacagtaatgaatataagtgtaaaaaatgtgattataagacgGTATGGAAATATTGTGCATaggaaaatgcaaaaattaatgcaacatatgaaaattcatactagtGCCAAATGCAAGTGTAAAGACTGTgagtataaaacagtgtggaagaattgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattttaaaactgtacggaaaaataatctacagcaacatatcaaaattcatactggtgacaaatataagtgtaatgagtgtgacgaatataagtgtaaagaatgtgattttaaaactgtatggaaaagtaatctaaagcaacatctcaaaattcatagaggcgatgaatataagtgtaaagaatgtgattataaaacagtatggaaagattgtctaaaggaacatgtcaaaattcatacaggtgatgagtataaatgtaaagaatgtgattttaaaactgtacggaaaagtgatctaatgcgacatgtcaaaattcatacaggtgatgagtataaatgtaaagaatgtgattataaaacagtatggaaatatGGTTTACAGGAACATGCCGAAATTCATACAGGTcatgaatataattgtaaagaatatgattataaaactgtatggaaaagtgatctaatgcgacatgtcaaaattcatgcagttgattttaaaactgtatggaaaagtaatctaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtatggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattttaaaactgtacggaaaaataatctacagcaacatatcaaaattcatactggtgacaaatataagtgtaatgagtGTGAGTACGAAACAGTATGGAAagattgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattttaaaactgtatggaaaagtaatctaaagcaacatctcaaaattcatagaggcgatgaatataagtgtaaagaatgtgattataaaactgtatggaaaagtaatctaaagcaacatgtcaaaattcatacaggtgatgaatataattgtaaagaatgtgattttaaaactgtacggaaaagtgatctaatgcgacatgtcaaaattcatgcaggtgatgaatataagtgtaaagaatgtgattataaaactgtatggaaaagtaatctaaaagaacacttaaaaattcatacaggtgaagaatataagtgtaaagaatgtgattttaaaactgtacggaaaaataatctacagcaacatatcaaaattcatactggtgacaaatataagtgtaatgagtGTGAGTACGAAACAGTATGGAATGATTGtgtaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgatttcaaaactgtatggaaaagtaatctaaagcaacatctcaaaattcatagaggtgatgaatataattgtaaagaatgtgattataaaactgtatggaaaagtgatctaatgcgacaagtcaaaattcatacaggtgatgagtataaatgtaaagaatgtgattataaaacagtatggaaatatGGTTTACAGGAACATGCCGAAATTCATACAGGTcatgaatataattgtaaagaatatgattataaaactgtatggaaaagtgacatgtcaaaattcatgcaggtgatgaataaaagtgtaaagaatgtgattataaaactgtatggaaaagtaatctaa
Protein Sequence
MKIHTTAKYKCKECEYKSVWKNCLKEHVKIHTGEEYKCKECDFKTVRKNNLQQHIKIHTGDKYKCNECEYKTVWKDCLKEHVKIHTGDEYKCKECDFKTVWKSNLKQHLKLHRGDEYNCKECDYKTVWKSNLKQHVKIHTGDEYNCKECDYKTVRKSDLMRHVKIHAGDEYKCKDCGYKTVKNISVKNVIIRRYGNIVHRKMQKLMQHMKIHTTANTSVKSVSEEYKCKECDFKTVRKNNLQQHIKIHTGDKYKCNECEYKTVWKDCLKEHVKIHTGDEYKCKECDFKTVWKSNLKQHLKIHRGDEYSCKECDYKTVWKSNLKQHVKIHTGDEYNCKECDYKTVRKSDLMRHVKIHAGDEYKCKDCGYKTVMNISVKNVIIRRYGNIVHRKMQKLMQHMKIHTSAKCKCKDCEYKTVWKNCLKEHVKIHTGEEYKCKECDFKTVRKNNLQQHIKIHTGDKYKCNECDEYKCKECDFKTVWKSNLKQHLKIHRGDEYKCKECDYKTVWKDCLKEHVKIHTGDEYKCKECDFKTVRKSDLMRHVKIHTGDEYKCKECDYKTVWKYGLQEHAEIHTGHEYNCKEYDYKTVWKSDLMRHVKIHAVDFKTVWKSNLKQHVKIHTGDEYKCKECDYKTVWKSNLKEHVKIHTGEEYKCKECDFKTVRKNNLQQHIKIHTGDKYKCNECEYETVWKDCLKEHVKIHTGDEYKCKECDFKTVWKSNLKQHLKIHRGDEYKCKECDYKTVWKSNLKQHVKIHTGDEYNCKECDFKTVRKSDLMRHVKIHAGDEYKCKECDYKTVWKSNLKEHLKIHTGEEYKCKECDFKTVRKNNLQQHIKIHTGDKYKCNECEYETVWNDCVKEHVKIHTGDEYKCKECDFKTVWKSNLKQHLKIHRGDEYNCKECDYKTVWKSDLMRQVKIHTGDEYKCKECDYKTVWKYGLQEHAEIHTGHEYNCKEYDYKTVWKSDMSKFMQVMNKSVKNVIIKLYGKVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-