Lyun008919.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001557.1:287660-300865[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.35 4.9 7.9 0.4 1 23 152 174 152 174 0.96
2 28 0.0005 0.007 16.9 4.2 1 23 205 227 205 227 0.99
3 28 1.2 17 6.2 2.5 1 23 232 254 232 254 0.98
4 28 0.32 4.6 8.0 4.4 1 23 259 281 259 281 0.96
5 28 0.006 0.085 13.5 1.6 1 23 286 308 286 308 0.98
6 28 0.027 0.38 11.4 2.5 1 23 313 335 313 335 0.98
7 28 0.27 3.8 8.3 1.5 1 23 340 362 340 362 0.98
8 28 0.097 1.4 9.7 0.9 1 23 367 389 367 389 0.98
9 28 0.49 6.9 7.5 3.3 1 23 394 416 394 416 0.98
10 28 0.61 8.6 7.2 3.3 1 23 421 443 421 443 0.98
11 28 0.0053 0.075 13.6 2.9 1 23 448 470 448 470 0.99
12 28 0.98 14 6.5 3.6 1 23 475 497 475 497 0.98
13 28 0.023 0.33 11.6 0.9 1 23 502 524 502 524 0.98
14 28 0.035 0.5 11.0 2.8 1 23 639 661 639 661 0.98
15 28 0.0036 0.052 14.2 1.0 1 23 693 715 693 715 0.98
16 28 9e-05 0.0013 19.2 1.7 1 23 720 742 720 742 0.98
17 28 0.00099 0.014 15.9 1.1 1 23 774 796 774 796 0.98
18 28 0.00021 0.0029 18.1 1.1 1 23 801 823 801 823 0.98
19 28 0.27 3.8 8.3 0.5 1 23 828 850 828 850 0.98
20 28 0.00012 0.0017 18.8 1.4 1 23 855 877 855 877 0.99
21 28 0.0039 0.055 14.1 0.7 1 23 882 904 882 904 0.98
22 28 0.00051 0.0073 16.8 1.2 1 23 909 931 909 931 0.99
23 28 5.9e-05 0.00084 19.8 1.9 1 23 936 958 936 958 0.99
24 28 5.1e-05 0.00072 20.0 1.7 1 23 963 985 963 985 0.99
25 28 0.01 0.14 12.8 0.7 1 23 990 1012 990 1012 0.98
26 28 4.9e-05 0.00069 20.0 1.1 1 23 1017 1039 1017 1039 0.99
27 28 8.5e-05 0.0012 19.3 1.9 1 23 1044 1066 1044 1066 0.99
28 28 0.00039 0.0055 17.2 2.0 1 23 1071 1093 1071 1093 0.99

Sequence Information

Coding Sequence
ATGGATATCGACTCGGTAgactttattgaaagttgtgcaataaaatcagaagtgaatttaacagaaacattttctttttatgggaAGTATGAAGattGTGGGATTAAGGGGCTGAAACCGGAGCCAGTAGATTACGAAGAATCGTTTAAacctaaagaagaaaatgacGTGACAGAACCCATAAATACCCATGCTACTCTCAAACAACGAGATTTTTGTAATAActctaattttataacaatcaGGGAAAATTctgtaatagaatttttaaaagttaataaaaatgttgaatactCTTGTATGGAATGTAACTTTTCAACCCAGTTAGAATGTACGATAAAAGAGCATACGAAGATTCACAATGATGgatataatattgaagaatgtaatattaAGTCTCCACAGATTTTCTCTCTATCACCACAGTTGAAACCTAGAAAACGTGGGAATAAATAtgcttgtaatgaatgtaattacatcgcattgaacaaaaattatctaaGGAAACACGTGAAGATTCACAATGGTGCATCATGTAGTGAGAAATTTGATTATAGTACAGGGAGGAATGGTCACTTCACAGCACATAGAAAAATGAATtctggtgatgaatacaagtgtacaaagtgtgattataaaacaggaaggaaagataatttaaagcatcatgtcaaaattcatacgggtgatgaatataagtgtaaagaatgtgtttataaaacagtatggaaacatCTTCTAaaacaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaacatcttctaacacaccatgtcaaaattcatactcataatgaatataagtgtgtagaatgtaattataaaacagcgaGGATAGATAGTTTGAAgcatcatgtcaaaattcacacaagtgataaatataagtgtgcagaatgtgattataaaacagggtcgaaaaaatgtttaaaagaacatgtcaaaattcatacagttgatgaatataggtgtaaacaatgtgattataaaacagaatggaaaaatcttctaaagcaacatgtcaaaattcatacgaGTGATCgatttaagtgtaaagaatgtgattataaaacagtatggaagaAGTCTCTaatggaacatgtcaaaattcatactggtgatgaatacaagtgtaaagaatgtgattataaaacagtatggaaaaaatgtctaaaggaacatgttaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaagtgtttaaaggaacatgttaaaattcatactggcgatgaatataagtgtgaacaATGTGACTATAAATCAGTACGATTAAGTTGTCTACgtcaacatgtcaaaattcatagtggtgatgaatataagtgtaaagaatgtgagtataaaacagtatggaaaaagtgtctaaaggaacatctcaaagttcatagtggtgatgaatttaagtgtaaagaatgtgccTATAAAACAGTGTCAAAAAATGGCCTAAAGCAACAtgccaaaattcatactggcaatgaatataaatgtaaagaatgtgactataaaacatttgttACAATGGATATTGACTCCGTAgacttttatgaaagttgtgctataaaatcagaagtgattgTAACCgagactttttctttttgtgggaagTACGAAGATTGTACGAGTAATCAACTGAAGCCGGAGCCAGTAGGTTACGAAGAATCGCTTCAAtgtgaagaagaaaatgatttaGCAGAGCCCATAGATTCATGTGCTACTGCGATGCAAAGAGATGATTGTAAAgactataattttataacaattggaGAAAATTCTGAAGTAGATCTTGTGAAAGCTTCTAAAAGTGTTAAATACTCTtgtaagaaatgtaattttacaactgaatcagaattttctataaaaaagcATATGAAGATTCACAATGATGGATATAATgttgaagaatgtaattttaagacgcCACAGATTTTCTCTCTATCACCACAGTTGAATATTCCAACAGGTGGGAATAAAtatgtttgtaatgaatgtaattacaccacattgAATGAAAGTTACTTAAAGAGACATTTAAAGATTCACAAAAGTGCTACATATAATTGcgagaaatgtgattataaaacagtgaggaaaagtaatctaaagcaacatgtcaaaattcatactggtgacaaatataagtgtgaagaatctgattataaaacaatacagaaaagtaatctaaagcaacttgttaaaatttatactggtgacaaatatacgTGTAACGAGTGTGATTACAAAACGGTTTCGAAAagtcgtctaaaggaacatgttaaaattcatattggtgACAAGTatatgtgtaaagaatgtgattataaaacaatattgaaaagtaatctaaaacaacatatcaaaattcatacaggtgacaaatatacatgtagagagtgtgattataaaacagtatggaaaaatgatctaatgcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacggTGCGGAAATGGCAGctaaaggaacatctcaaaattcatagtggtgacaaatataagtgtaaagaatgtgattataaaacggtatggaaaagtaatctaattcaacatgtcaaaattcatactggtgacaaatataagtgtgaagaatgtgattataaaactgtacggaaaagtcgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtgcggaaaaatCAACTGAaccaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaagtGTAAggaaaagtgatctaatgcaacatgtcaaaactcatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtatggaaaagtgatctaatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagagtgtgattataaaacagtacagaaaagtaatctagtgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataagacagTACGGAAATGGCaattaaagaaacatgtcaaaattcatagtgattacaaatataagtgtaaagattgtgattataaaactgtacggaaaagtagactaaaggaacatgtcaaaattcatactggtgactaa
Protein Sequence
MDIDSVDFIESCAIKSEVNLTETFSFYGKYEDCGIKGLKPEPVDYEESFKPKEENDVTEPINTHATLKQRDFCNNSNFITIRENSVIEFLKVNKNVEYSCMECNFSTQLECTIKEHTKIHNDGYNIEECNIKSPQIFSLSPQLKPRKRGNKYACNECNYIALNKNYLRKHVKIHNGASCSEKFDYSTGRNGHFTAHRKMNSGDEYKCTKCDYKTGRKDNLKHHVKIHTGDEYKCKECVYKTVWKHLLKQHVKIHTGDEYKCKECDYKTIWKHLLTHHVKIHTHNEYKCVECNYKTARIDSLKHHVKIHTSDKYKCAECDYKTGSKKCLKEHVKIHTVDEYRCKQCDYKTEWKNLLKQHVKIHTSDRFKCKECDYKTVWKKSLMEHVKIHTGDEYKCKECDYKTVWKKCLKEHVKIHTGDEYKCKECDYKTIWKKCLKEHVKIHTGDEYKCEQCDYKSVRLSCLRQHVKIHSGDEYKCKECEYKTVWKKCLKEHLKVHSGDEFKCKECAYKTVSKNGLKQHAKIHTGNEYKCKECDYKTFVTMDIDSVDFYESCAIKSEVIVTETFSFCGKYEDCTSNQLKPEPVGYEESLQCEEENDLAEPIDSCATAMQRDDCKDYNFITIGENSEVDLVKASKSVKYSCKKCNFTTESEFSIKKHMKIHNDGYNVEECNFKTPQIFSLSPQLNIPTGGNKYVCNECNYTTLNESYLKRHLKIHKSATYNCEKCDYKTVRKSNLKQHVKIHTGDKYKCEESDYKTIQKSNLKQLVKIYTGDKYTCNECDYKTVSKSRLKEHVKIHIGDKYMCKECDYKTILKSNLKQHIKIHTGDKYTCRECDYKTVWKNDLMQHVKIHTGDEYKCKECDYKTVRKWQLKEHLKIHSGDKYKCKECDYKTVWKSNLIQHVKIHTGDKYKCEECDYKTVRKSRLKEHVKIHTGEEYKCKECDYKTVRKNQLNQHIKIHTGDEYKCKECDYKSVRKSDLMQHVKTHTGDEYKCKECDYKTVWKSDLMQHVKIHTGDKYKCKECDYKTVQKSNLVQHVKIHTGDKYKCKECDYKTVRKWQLKKHVKIHSDYKYKCKDCDYKTVRKSRLKEHVKIHTGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-