Lyun007065.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:2014257-2022296[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 8.3 1.2e+02 3.6 0.0 1 21 67 87 67 88 0.91
2 32 1.4 20 6.0 1.2 2 23 176 197 176 197 0.96
3 32 0.12 1.7 9.4 0.9 1 23 229 251 229 251 0.98
4 32 0.00011 0.0016 18.9 1.6 1 23 256 278 256 278 0.98
5 32 1.5 22 5.9 0.9 1 23 283 305 283 305 0.93
6 32 0.25 3.5 8.4 1.5 1 23 310 332 310 332 0.98
7 32 9.2e-05 0.0013 19.2 1.8 1 23 337 359 337 359 0.99
8 32 5.6 80 4.1 0.6 1 23 364 386 364 386 0.87
9 32 0.12 1.7 9.4 0.8 1 23 391 413 391 413 0.98
10 32 0.082 1.2 9.9 1.0 1 23 418 440 418 440 0.98
11 32 0.00027 0.0038 17.7 4.3 1 23 445 467 445 467 0.99
12 32 0.014 0.2 12.3 1.8 1 23 472 494 472 494 0.98
13 32 0.00089 0.013 16.1 1.5 1 23 499 521 499 521 0.98
14 32 0.00015 0.0021 18.6 2.5 1 23 526 548 526 548 0.99
15 32 0.039 0.55 10.9 0.6 1 23 553 575 553 575 0.98
16 32 0.44 6.2 7.6 0.1 2 21 673 692 672 693 0.93
17 32 1.5 21 5.9 1.6 1 21 756 776 756 777 0.94
18 32 0.22 3.2 8.5 1.3 1 23 783 805 783 805 0.98
19 32 0.072 1 10.1 0.3 1 23 810 832 810 832 0.98
20 32 0.0055 0.078 13.6 5.1 1 23 837 859 837 859 0.99
21 32 7.6e-05 0.0011 19.4 3.9 1 23 864 886 864 886 0.99
22 32 8.2e-05 0.0012 19.3 3.6 1 23 891 913 891 913 0.99
23 32 0.08 1.1 9.9 0.7 1 23 918 940 918 940 0.98
24 32 0.0016 0.022 15.3 2.5 1 23 945 967 945 967 0.99
25 32 1.2 17 6.2 0.6 1 23 972 994 972 994 0.93
26 32 0.00027 0.0038 17.7 3.5 1 23 999 1021 999 1021 0.99
27 32 0.023 0.32 11.6 0.4 1 23 1026 1048 1026 1048 0.99
28 32 0.00019 0.0027 18.2 1.6 1 23 1053 1075 1053 1075 0.99
29 32 0.021 0.3 11.7 1.7 1 23 1080 1102 1080 1102 0.99
30 32 0.00013 0.0018 18.7 3.0 1 23 1107 1129 1107 1129 0.99
31 32 0.069 0.97 10.1 1.7 1 23 1134 1156 1134 1156 0.98
32 32 8.7e-05 0.0012 19.3 2.1 1 23 1161 1183 1161 1183 0.99

Sequence Information

Coding Sequence
ATGGACTTCGATGATAATAAGAGTAATCTAATAAAATCGGAAGTGATTGTTGatgaaacattttcttattgTCGAAAATATGGAGGTTATGGAAATGAAGAATTGAAAACGGAACCGGTAAATTTTGAGGAATCTTTTAATtgtaaagaagaagataatTTTGGTGATCACACTGCCCAAAGTATACCCATGCATCAATATATTTGTaacgaatgtaattttattgcaattgagaaaaattctctaatagaacataagaaaatccttaaaaatgttcaatatttttgccAGGAATGCGACTTTAAAACCCTGGTAGAATGTTCAATAAAGCAGCATTTCAGAATTCATAACAGAGTTGGTTGTAAACTAACCACTAAAAAATATGACTATAAGACGACACAAATTTTTCCTCTTGCACCAAAATTGAAAACTCCGAAGAgtggtgatgagtataagtaCAATTATAAAACATGGTGGGAACgcagtctaaaggaacatgtaaagtGCCATGCCGGCGATAAAAAtgaatgtaaggaatgtgaatataaaacaatatggaaactgAACTTAAAGAAACATGTAAAACGTCACACTGGTGAGGAATATAAATGcaaggaatgtaattataaaacatggTGGAAGTGGTGTCTAAGGGAACATGTAAAAACTCATACTGacgatgaatacaagtgtaaggaatgcgattataaaacgatATGGAAACAGAGTTTAATGGAACATGTAAAAATGCATACTGGCGATGAGTACAAATGTAACgagtgtgattttaaaacaccaagaaaaaataatctaTCGAGACATATGACAATTCATATTGGTGTTCTATATGACTGcaaggaatgtaattataaaacattgtggaaaGAAAGCCTTcagaaacatataaaaattcatactaatgatgaatataagtgtaaggaatgtgattataaaacaatatggaaacggAGTCTAATGgaacacaaaaaaattcatactggtgatgaatataaatgtaatgagtgtgattttaaaaccccaagaaaaaataatctaTTGAGACATATGACAATGCATATTGGTAATGAGTAtgagtgtaaggaatgtgattataaaacttggtggaaacagagtctaaaggagcacgttaaaattcatactgatgatgagtataagtgtaaggaatgtgattataaaacaatatggaaacggAGTCTAATGGagcatgtgaaaattcatactgatgatgaatataagtgtaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatgtgaaaattcatactgacgatgaatataagtgtgagaaatgtgattataaaacaatacggaAACATAATCTAACACAACATCTAaagattcatactggtgatgcatatacgtgtaaagaatgtgattataaaacgtgGCGGAAATATAGTCTAACACagcatgtaaaaattcatactgacaatgaatttaagtgtacggaatgtgattacaaaacaatacggaaacagagtctaatgcaacacgtaaaaattcatactggcgatcaatataagtgtactgaatgtaattataaaacaatacggaAACAAAGTCTAACGcaacacatgaaaattcatactggtgatgaatatgagtgtaaggaatgtaattataaaacaccgtgGAAAGAAAGCCTAAAAAGACATgcgaaaattcatactgatgatcAATTAAGTCTAAGTGAATGGAGCTCGCCACCTTACGTAGTGCGACATGTACGTGAAGTCGTGAACTATGTAAACATAGTTTCTATAGATACGTTACGTTATATAATGGACATCGAATATAATGAGAATTATCCCTTAAAATCGGAAGtgattgtaaatgaaacattttcccATTGTGGAATAtatagagattatggGAATGAACAATTGAAAATGGAACCAGTAGATTTTGAAGAATCTTTTACATGCAAAGAAGAAGCCAATCTTGGGAAGCAGCAATGTATTTGTAATGGATGTGATTTCGTTGCAAAGGCTAaagattctctaatagaacatatgaaaattactaaaaatgttcaatatttttgcaaGGAATGTAACTTAACAACCCTGTTAGAATGTTCTATAAAACAGCATTTCAAGATTCATAAGAGGGTTGGTTGTAAACATACCACTAGAAAATATAACTATAAGACATCACAAATTTTCTCTTTAGCACCTCACttgaaaactacaaaaagtggtgataaatataattgtaagaaatgtgattataaaacaatatggaaacataATCTAGTGCAacacttaaaaaattatacaggtgatgaatataagtgtaaagaatgcgattataaaacagtatggaaacagAATATAAAAGAACATGTGAAAActcatactggtgacgaatataagtgtatggaatgtgattataaaacaatatggaaaaataatcttGCACAACACATAAATATTCATAATGGTGATGTATATAAGTGTAAGatctgtgattataaaacaatacagaaACATTGTTTAGTGcaacacataaaaattcatacaggttatgaatataagtgtaaggaatgtgattataaaacaatacggaAACATAATCTAACgcaacacatcaaaattcatattgATGATccatataagtgtaaggaatgtgattataaaacaacacagAAACATAATCTAgtgcaacatataaaaattcatactggtgatcagtataagtgtaatgaatgtaattataaaacaatatggaaacaagGTCTGcaggaacatatcaaaagtcATACTGAcaatgagtataagtgtaaggaatgtgattataaaacaatacgaaAATATAGGCTAACGCAACATGTAAaagttcatactggtgatgaatataagtgtaacgaatgtgactataaaacaatatggatacagagtctaaaggaacacgtGAAAAATCAtactgatgatgaatataagtgtaaggagtgtgattataaaacagtacacaaaaaaaatttactgcaacacataaaaattcatattggtgatcaatataagtgtaaggaatgtgattataaaacaatatggaaacaggGTCTACAggcacatataaaaattcatactgacattgaatacaagtgtaaggaatgtgattataaaacaatacagaaACGTAATCTAGTGCAAcacttaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatatggaaatatAAACTAACGcaacacataaaaattcatGCTGGTAgtcaatataagtgtaaggaatgtgattataaaacaatacggaAACATAATCTAGTGcaacacataaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatatggaaatatAAACTAACGCAAcacgtaaaaattcatactggtagtctatataagtgtaaggattgTGATTATGAAACAATACGGAAACATAATCTAGTGcaacacataaaaattcatattggtgaTAAGAAATTTGACTTTAAGACAGTGAAGAAAGCTAATTTAAAAGGTGGCAAATCATATGAGTGA
Protein Sequence
MDFDDNKSNLIKSEVIVDETFSYCRKYGGYGNEELKTEPVNFEESFNCKEEDNFGDHTAQSIPMHQYICNECNFIAIEKNSLIEHKKILKNVQYFCQECDFKTLVECSIKQHFRIHNRVGCKLTTKKYDYKTTQIFPLAPKLKTPKSGDEYKYNYKTWWERSLKEHVKCHAGDKNECKECEYKTIWKLNLKKHVKRHTGEEYKCKECNYKTWWKWCLREHVKTHTDDEYKCKECDYKTIWKQSLMEHVKMHTGDEYKCNECDFKTPRKNNLSRHMTIHIGVLYDCKECNYKTLWKESLQKHIKIHTNDEYKCKECDYKTIWKRSLMEHKKIHTGDEYKCNECDFKTPRKNNLLRHMTMHIGNEYECKECDYKTWWKQSLKEHVKIHTDDEYKCKECDYKTIWKRSLMEHVKIHTDDEYKCKECDYKTIWKQSLKEHVKIHTDDEYKCEKCDYKTIRKHNLTQHLKIHTGDAYTCKECDYKTWRKYSLTQHVKIHTDNEFKCTECDYKTIRKQSLMQHVKIHTGDQYKCTECNYKTIRKQSLTQHMKIHTGDEYECKECNYKTPWKESLKRHAKIHTDDQLSLSEWSSPPYVVRHVREVVNYVNIVSIDTLRYIMDIEYNENYPLKSEVIVNETFSHCGIYRDYGNEQLKMEPVDFEESFTCKEEANLGKQQCICNGCDFVAKAKDSLIEHMKITKNVQYFCKECNLTTLLECSIKQHFKIHKRVGCKHTTRKYNYKTSQIFSLAPHLKTTKSGDKYNCKKCDYKTIWKHNLVQHLKNYTGDEYKCKECDYKTVWKQNIKEHVKTHTGDEYKCMECDYKTIWKNNLAQHINIHNGDVYKCKICDYKTIQKHCLVQHIKIHTGYEYKCKECDYKTIRKHNLTQHIKIHIDDPYKCKECDYKTTQKHNLVQHIKIHTGDQYKCNECNYKTIWKQGLQEHIKSHTDNEYKCKECDYKTIRKYRLTQHVKVHTGDEYKCNECDYKTIWIQSLKEHVKNHTDDEYKCKECDYKTVHKKNLLQHIKIHIGDQYKCKECDYKTIWKQGLQAHIKIHTDIEYKCKECDYKTIQKRNLVQHLKIHTGDEYKCKECDYKTIWKYKLTQHIKIHAGSQYKCKECDYKTIRKHNLVQHIKIHTGDEYKCKECDYKTIWKYKLTQHVKIHTGSLYKCKDCDYETIRKHNLVQHIKIHIGDKKFDFKTVKKANLKGGKSYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-