Lyun015155.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002131.1:2897211-2907669[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.22 3.1 8.6 0.1 1 21 60 80 60 81 0.95
2 26 0.00016 0.0022 18.5 1.2 1 23 135 157 135 157 0.99
3 26 0.0024 0.033 14.7 1.8 1 23 184 206 184 206 0.99
4 26 0.12 1.7 9.4 1.8 1 23 211 233 211 233 0.98
5 26 0.21 2.9 8.6 0.4 1 23 238 260 238 260 0.97
6 26 0.065 0.92 10.2 1.4 1 23 265 287 265 287 0.98
7 26 0.065 0.92 10.2 1.4 1 23 292 314 292 314 0.98
8 26 0.063 0.89 10.3 0.6 1 23 319 341 319 341 0.98
9 26 3.6e-05 0.0005 20.5 2.1 1 23 346 368 346 368 0.99
10 26 0.013 0.18 12.5 0.3 1 21 429 449 429 450 0.96
11 26 0.057 0.81 10.4 1.0 1 23 461 483 461 483 0.98
12 26 0.021 0.3 11.7 0.6 1 23 488 510 488 510 0.98
13 26 0.0013 0.019 15.5 3.6 1 23 515 537 515 537 0.99
14 26 0.00016 0.0022 18.5 1.6 1 23 542 564 542 564 0.99
15 26 0.00012 0.0017 18.8 1.9 1 23 569 591 569 591 0.99
16 26 0.0032 0.045 14.3 2.1 1 23 596 618 596 618 0.99
17 26 1.1e-05 0.00016 22.1 2.1 1 23 623 645 623 645 0.99
18 26 0.092 1.3 9.7 3.6 1 23 650 672 650 672 0.99
19 26 0.00058 0.0082 16.7 1.0 1 23 677 699 677 699 0.99
20 26 0.13 1.8 9.3 1.9 1 23 704 726 704 726 0.98
21 26 0.11 1.6 9.5 3.1 1 23 731 753 731 753 0.98
22 26 0.19 2.7 8.7 2.4 1 23 758 780 758 780 0.98
23 26 3.6e-05 0.0005 20.5 2.1 1 23 785 807 785 807 0.99
24 26 0.02 0.28 11.8 3.4 1 23 812 834 812 834 0.99
25 26 0.0011 0.016 15.8 3.3 1 23 839 861 839 861 0.99
26 26 0.00016 0.0022 18.4 4.7 1 23 866 888 866 888 0.98

Sequence Information

Coding Sequence
ATGGATGTTGAATCCATTGAAACTTTTGCAATTAAATCTGAAGTGAATTTAACAGAAACTTTTTCGTCTTGTGGAGAATACAGAGATTGTGAGAATGCAGAATTGAAAACTGAAGTAGTAAATTATGAAGAATCGtttaaatgtaaggaagaagGTGATTCTGTTCCATTGCCACAATATTCTTGCAATGAGTGTAATTTTATGACAATGGAAAaagattctctaatagaacatttaaaaattactaaaaatgttgaatatttttgtaaaaaatgtaactttAGAACCTGGATGGAGTGTTCTACAAAAATCCATTTGCGGATTCATAATGAAGTATATATTAGATTTATTCCTGAAGGAAGTAATTTTAAGACACCCTGGATTTTTCCATTAAGCGATATATATAAGTGtcaggaatgtgattataaaacagcacgGAAACCTAGTCTCAAgaaacacgtcaaaattcacactggtaaagaaggtatttataaaacagtgcagaaaaATAACCTGAAAGATCATGCTAAAATACacacaggcgatgaatataaatgtaaagaatgtaattataaaacggtgCTGAAAAGGAATCTGAAGgatcatgttaaaattcatacaggtgatgaatataaatgtaaagaatgtaattataaaacagtgtggaaacgttatttaaaggaacatgttaaaattcacactggtgatgtatataaatgtaaagaatgtgattataaaacagtgtggaaaagtgtTCTAAATGAACatgccaaaattcatacagatgataaatataaatgtaaagaatgtgattacaaaactgtgtggaaacgttatttaaaggaacatgttaagattcacactggtgatgaatataaatgtaaagaatgtgattataaaacagtatggaaacgttatctaaaggaacatgttaaaattcacactggtgaggaatataagtgtaaagaatgtaattataaaacagtgtggaaagggcttctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtaattacaaaacagtgcgTAAAAGTAATCTGAAGGATcatgttaaaattcacacagGATGTATAATGGATGTTGAATCCATTGaaagttttgcaattaaatCTGAAGTGAATGTAACAGAAACCTTTTCCTTTTATGGAGattgtcAGAATGGAGAATTGAAAACTGAACCAGTAAATTATGaagaattgtttaaatgtaaggaagaaCATGACCCTGTTCTACTGCAACAATATACTTgtaatgagtgtaattttaTGACGATGGACAAAGATTCTTTAAtgcaacatttgaaaattactaaaaatgttgaatatttttgtaataaatatgaatgtacagaatgtgattataaaacagtgtggaaaaatagtCTAAAACAACATACCAAGATTCATACatatgatgaatataagtgtgaagaatgtgattataaaacagtatggaaaaataatctaaaactaCATGTCAAGATTCATACAGATGATCAATATaagtgtgcagaatgtgattataaaacaatgcgGAAAGATTGTTTAAAGAAACACATAAAGATTCAcactggcgatgaatataaatgtgaagaatgtaattataaaacagtgcggaaaaggAATCTGAAGGATcatgttaaaattcacacaggtgatgaatataagtgtaatgaatgtgattataaaacaatacagaaagtttatttaaagaaacacCTTAAAATTCACACGGGTGATTAttacaagtgtaaagaatgcaattataaaacagtacgtaaactttatttaaaagaacacgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtaattataaaactgtgcgaAAAAGCAATCTGAAGGatcatattaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacggtatggaaagattgtttaaataaacatgTCAAGAGTCATACgggcgatgaatataaatgtgaagaatgtaattacaaaacagtgAGGGAAAGTAAACTgaaggaacatgttaaaattcacacaggtgatgaatataagtgtacagaatgtagttataaaacagtgtggaaaggtcatctaaaagaacatgttaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaagaCTGTTTAAAGAAACATgccaaaattcacacaggtgctgaatataattgtaaagagtgtgattataaaacagtatggaaagattgtttaaataaacatgtcaagattcatacaggtgatgaatataaatgtaaagaatgtaattataaaacagtgcggaaaagtAATCTGAAAGATcatgttaaaattcacactggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaagaCTGTTTAAAGAAACACATCAAGATTCATACACGTggtgaatataaatgtaaagaatgtgaccatacaacagtgcgaaaagatcgTCTAaaacaacatgtcaaaattcatacaggtggtgaatataagtgtaatgattgtgactataaaacagtacggaaagATTGTTTAAAGAGACACATCAAAaatcacacaggtgatgaatataaatgtcaaCAATAG
Protein Sequence
MDVESIETFAIKSEVNLTETFSSCGEYRDCENAELKTEVVNYEESFKCKEEGDSVPLPQYSCNECNFMTMEKDSLIEHLKITKNVEYFCKKCNFRTWMECSTKIHLRIHNEVYIRFIPEGSNFKTPWIFPLSDIYKCQECDYKTARKPSLKKHVKIHTGKEGIYKTVQKNNLKDHAKIHTGDEYKCKECNYKTVLKRNLKDHVKIHTGDEYKCKECNYKTVWKRYLKEHVKIHTGDVYKCKECDYKTVWKSVLNEHAKIHTDDKYKCKECDYKTVWKRYLKEHVKIHTGDEYKCKECDYKTVWKRYLKEHVKIHTGEEYKCKECNYKTVWKGLLKEHVKIHTGDEYKCKECNYKTVRKSNLKDHVKIHTGCIMDVESIESFAIKSEVNVTETFSFYGDCQNGELKTEPVNYEELFKCKEEHDPVLLQQYTCNECNFMTMDKDSLMQHLKITKNVEYFCNKYECTECDYKTVWKNSLKQHTKIHTYDEYKCEECDYKTVWKNNLKLHVKIHTDDQYKCAECDYKTMRKDCLKKHIKIHTGDEYKCEECNYKTVRKRNLKDHVKIHTGDEYKCNECDYKTIQKVYLKKHLKIHTGDYYKCKECNYKTVRKLYLKEHVKIHTGDEYKCKECNYKTVRKSNLKDHIKIHTGDEYKCKECDYKTVWKDCLNKHVKSHTGDEYKCEECNYKTVRESKLKEHVKIHTGDEYKCTECSYKTVWKGHLKEHVKIHTGDEYKCKECDYKTVWKDCLKKHAKIHTGAEYNCKECDYKTVWKDCLNKHVKIHTGDEYKCKECNYKTVRKSNLKDHVKIHTGDEYKCKECDYKTVWKDCLKKHIKIHTRGEYKCKECDHTTVRKDRLKQHVKIHTGGEYKCNDCDYKTVRKDCLKRHIKNHTGDEYKCQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-