Lyun008808.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001556.1:186372-195647[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.041 0.58 10.8 0.1 1 21 64 84 64 85 0.95
2 28 0.0024 0.034 14.7 2.0 1 23 148 170 148 170 0.98
3 28 0.0045 0.064 13.9 7.5 1 23 175 197 175 197 0.99
4 28 0.018 0.26 11.9 0.5 1 23 202 224 202 224 0.98
5 28 0.0014 0.02 15.5 4.6 1 23 229 251 229 251 0.98
6 28 0.00063 0.0089 16.6 0.7 1 23 256 278 256 278 0.98
7 28 5.8e-06 8.2e-05 23.0 1.0 1 23 283 305 283 305 0.99
8 28 0.0046 0.066 13.8 4.5 1 23 310 332 310 332 0.99
9 28 0.0018 0.026 15.1 0.9 1 23 337 359 337 359 0.99
10 28 0.19 2.6 8.8 3.7 1 23 364 386 364 386 0.98
11 28 0.00046 0.0066 17.0 1.8 1 23 391 413 391 413 0.98
12 28 0.0012 0.016 15.7 0.5 1 23 418 440 418 440 0.99
13 28 0.0074 0.1 13.2 0.1 1 21 481 501 481 502 0.95
14 28 4.1 58 4.6 2.8 1 23 508 530 508 530 0.97
15 28 0.12 1.8 9.3 1.2 1 23 562 584 562 584 0.98
16 28 0.0019 0.027 15.0 4.0 1 23 589 611 589 611 0.98
17 28 0.051 0.73 10.5 0.7 1 23 616 638 616 638 0.98
18 28 0.028 0.39 11.4 1.1 1 23 643 665 643 665 0.98
19 28 0.00055 0.0078 16.7 1.3 1 23 670 692 670 692 0.98
20 28 0.0023 0.032 14.8 1.3 1 23 697 719 697 719 0.99
21 28 0.23 3.2 8.5 1.9 1 23 724 746 724 746 0.98
22 28 0.076 1.1 10.0 3.2 1 23 751 773 751 773 0.99
23 28 0.0041 0.058 14.0 1.4 1 23 778 800 778 800 0.99
24 28 0.0061 0.087 13.4 1.6 1 23 805 827 805 827 0.98
25 28 0.094 1.3 9.7 1.8 1 23 832 854 832 854 0.98
26 28 0.0069 0.097 13.3 2.5 1 23 859 881 859 881 0.98
27 28 0.0037 0.052 14.1 4.5 1 23 886 908 886 908 0.99
28 28 0.076 1.1 10.0 0.9 1 23 913 935 913 935 0.98

Sequence Information

Coding Sequence
ATGAATATTGATTCTATTGAAAGTCgtgcaataaaatctgaagtgattttaacagaaacattttgtgGACAATATGGAGATTTTGgggataaagaactaaaaacagAACCAATAGATTACGAtattcaatgtaagaaagaagaTATTTCTGTAGAACAAACGGGGGTGAATGCTGCCCCAATGcaacaattttcttgtaagGAGTGTGACTTTGTGACAGTGGAAAAGGATTCTttaatagaacatttgaaaattactaaaaatgttaaGTGTTCTTGTAAGGAGTGGAACTTTACAACCCAGTTACAATGTTCTATAAAAAATCATTTCAGGATTCACAAAGGAGTGGatgataaatatattattgaagAAAGTAATTTTCAGACGTCACAGAATTTCTGTTTAACACCACAGTCGAAAACTTCAAAAAGTGATGACAAATAtacttgtaatgaatgtaattataccacattAAACAAAAGCTATCTAAGAAGACATGTTAAAATCCATAAAGAggctgaatataagtgtaaacattgtgattataaaacagtgcggaaagattgtctaaagcaacatgtcaaaatgcatacaggtgacaaatatgcatgtaaagaatgtgattataaaacagtgtggcaaagaaGTCTAAACAAACATATcaaaatccatacaggtgatgaatataactgtaaagaatgtaactttaaaacagTGCACAAAGATCACTTAAAggcacatatcaaaattcacacgggtgatgaatataagtgtaaagaatgcgactTTATAACAGTACGAAAAGATTATCTAAAAGCACATGGCAAAATTCATatgggtgatgaatataagtgtaaagaatgtgattataaaacagcaaggCAAAGTAGTTTAAAggcacatatcaaaattcatacaggtgatgaatataaatgtaatcaatgtgattataaaacagtgcgaaagtATTGTCTAAAGgaccatgtcaaaattcacacaggtgataaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtgatttaaagagacatgtcaaaattcatacaggtgttgaatataagtgcaaagaatgtgattttaaaacaacgtGGCATAATAATCTAAAgacacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactttaaaacagtgcgaaaatattatctaaaggcacatgccaaaattcatacgggtgataaatataagtgtaaagaatgtgattataaaacagcatggcaaagTAGTTTAAAggcacatatcaaaattcatacagGTGATGGGGATGAACAACTAAAAACAGAGCCAGTagattacgaagaattttttaagtgtaaggaagaagatatttctgtagaccaaatGAGCGTGCATGCTCCTCAGATGcaacaattttcttgtaatgagtgtGACTTTATGACAACGGACAATGATTCTCTAATAGACCACTTGAATATCAGTAAATGTGTTCAATATTCTTGCAATGAGTGTAACTTTACAAGTCAGTTACAATGTTCAATAAGAACACATGTCAGGATTCACAAAGGGGTGGATGATATTGAAGAATGTAAATTTCAGACGTCAAAGATTTCCTGTTTAACACAACAATGGAAGACTCAAATAAGTGGTGACAAATAtacttgtaatgaatgtaattataccacattaatcaaaaactcactaagaagacatgttaaaattcataaaggtgttgaatataaatgtaaagaatgtgactataaaacagtgcgaaaagattgTCTAAAGGTACATGTCAAAAATCACACAGGTGATAAatacaagtgtaaggaatgtaattataaaacaatatggaaaaacgctctaaaggaacatgtcagaattcatagaggtgatgaatatatgtgtaaagaatgtgattttaaaacaagatggcaaagtagtctacagacacatgtcaaaattcatactggtgataaatatatgtgtaaagaatgtgattataaaacagtacaaaaagatcgtctaaagcaacatatcaaaattcatataggtgatgaatataagtgtaaagaatgtgactataaaactacatggcaaaataatctaaaggaacatattaaaattcatataggtgatgaatataagtgtaaagaatgtgattataaaacaccatggcaAAGTTGTTTAAAgggacatgtcaaaattcataccggtgatgaatataagtgtaccgaatgtgattataaaacagtatggaaaaattgtttaacaaaacatatcaaaattcatactggtgatgaatataaatgtaaagaatgtgactataaaaccaCATggcaaaaaaatctaaaggtacatgtcaaaattcacactgatggtgaatataagtgtaaagaatgtgactataaaacaacatggcaaaaaaatctaaaggaacatgtcaaaattcatataggtaatgaatataagtgtaaagaatgtgattataaaacaccatggcaAAGTTGTTTAAAGGGACAtgtcagaattcatacaggtgatgaatttaagtgtaaagaatgtaactataaaacagtgcgaaaaaatcgtttaaaggaacatgtcaaaattcatgcaggagataaatataagtgtaaagaatgtaattataaaacagtacgaaaagATCGTCTAAAGCACCACGTCAAAATCCATACAGgtcatgaatataagtgtacagaatgtgattataaaacagcatggccAAGTTGTTTAAAGGGACAtgtcagaattcatacaggtgatgaatttaagtgtaaagaatgtgattttaaaacattgtgGCAAGGTTATTTTAAGacgcatgtcaaaattcatacaggtgatgaatataagtgtaatgaatgtaactataaaacgcTATGGAAGAATTGTCTAAAATCACATATCAAAAAACATAGTTGA
Protein Sequence
MNIDSIESRAIKSEVILTETFCGQYGDFGDKELKTEPIDYDIQCKKEDISVEQTGVNAAPMQQFSCKECDFVTVEKDSLIEHLKITKNVKCSCKEWNFTTQLQCSIKNHFRIHKGVDDKYIIEESNFQTSQNFCLTPQSKTSKSDDKYTCNECNYTTLNKSYLRRHVKIHKEAEYKCKHCDYKTVRKDCLKQHVKMHTGDKYACKECDYKTVWQRSLNKHIKIHTGDEYNCKECNFKTVHKDHLKAHIKIHTGDEYKCKECDFITVRKDYLKAHGKIHMGDEYKCKECDYKTARQSSLKAHIKIHTGDEYKCNQCDYKTVRKYCLKDHVKIHTGDKYKCKECDYKTVWQSDLKRHVKIHTGVEYKCKECDFKTTWHNNLKTHVKIHTGDEYKCKECDFKTVRKYYLKAHAKIHTGDKYKCKECDYKTAWQSSLKAHIKIHTGDGDEQLKTEPVDYEEFFKCKEEDISVDQMSVHAPQMQQFSCNECDFMTTDNDSLIDHLNISKCVQYSCNECNFTSQLQCSIRTHVRIHKGVDDIEECKFQTSKISCLTQQWKTQISGDKYTCNECNYTTLIKNSLRRHVKIHKGVEYKCKECDYKTVRKDCLKVHVKNHTGDKYKCKECNYKTIWKNALKEHVRIHRGDEYMCKECDFKTRWQSSLQTHVKIHTGDKYMCKECDYKTVQKDRLKQHIKIHIGDEYKCKECDYKTTWQNNLKEHIKIHIGDEYKCKECDYKTPWQSCLKGHVKIHTGDEYKCTECDYKTVWKNCLTKHIKIHTGDEYKCKECDYKTTWQKNLKVHVKIHTDGEYKCKECDYKTTWQKNLKEHVKIHIGNEYKCKECDYKTPWQSCLKGHVRIHTGDEFKCKECNYKTVRKNRLKEHVKIHAGDKYKCKECNYKTVRKDRLKHHVKIHTGHEYKCTECDYKTAWPSCLKGHVRIHTGDEFKCKECDFKTLWQGYFKTHVKIHTGDEYKCNECNYKTLWKNCLKSHIKKHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-