Lyun008904.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001557.1:150707-153169[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 3.1 44 4.9 0.3 13 23 18 28 16 28 0.91
2 23 5.9e-05 0.00083 19.8 2.3 1 23 33 55 33 55 0.99
3 23 5.9e-05 0.00083 19.8 2.3 1 23 60 82 60 82 0.99
4 23 5.9e-05 0.00083 19.8 2.3 1 23 87 109 87 109 0.99
5 23 5.9e-05 0.00083 19.8 2.3 1 23 114 136 114 136 0.99
6 23 5.9e-05 0.00083 19.8 2.3 1 23 141 163 141 163 0.99
7 23 0.016 0.22 12.2 2.0 1 23 194 216 194 216 0.98
8 23 0.79 11 6.8 0.6 1 23 221 243 221 243 0.97
9 23 0.00022 0.003 18.0 2.8 1 23 248 270 248 270 0.98
10 23 0.00017 0.0024 18.4 1.5 1 23 275 297 275 297 0.98
11 23 0.00036 0.005 17.3 1.1 1 23 329 351 329 351 0.99
12 23 0.016 0.23 12.1 1.9 1 23 356 378 356 378 0.98
13 23 0.093 1.3 9.7 1.6 1 18 383 400 383 400 0.96
14 23 0.005 0.07 13.7 1.4 1 23 410 432 410 432 0.99
15 23 0.0044 0.062 13.9 4.4 1 23 437 459 437 459 0.98
16 23 0.016 0.22 12.1 2.0 1 23 464 486 464 486 0.98
17 23 2.1e-05 0.00029 21.2 2.4 1 23 491 513 491 513 0.99
18 23 0.087 1.2 9.8 0.5 1 23 518 540 518 540 0.98
19 23 0.0018 0.026 15.1 2.9 1 23 555 577 555 577 0.99
20 23 3.6e-05 0.00051 20.4 1.9 1 23 582 604 582 604 0.99
21 23 0.00018 0.0025 18.3 1.5 1 23 609 631 609 631 0.99
22 23 0.011 0.16 12.6 0.7 1 23 636 658 636 658 0.98
23 23 0.0067 0.095 13.3 4.8 1 23 663 685 663 685 0.99

Sequence Information

Coding Sequence
ATGAACATCGACTCAGTAGACTTTATTGAAAGTTCTgcaataaaatcagaaaaaagtaatctaaagaaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattttaaaactggacagaaaagtaatctaaagaaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattttaaaactggacagaaaagtaatctaaagaaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattttaaaactggacagaaaagtaatctaaagaaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattttaaaactggacagaaaagtaatctaaagaaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattttaaaactggacagaaaagtaatctaaagaaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtaattttaagacgcCACAGATTTTCTCTCCATCACCACATTTGGAAAGTGGTGGGAATGAATATGTTTGTAATCaatgtaattacaccacattgaacaaaaattatctaaagagacatgtgaaaattcacaaCAGTGCTGCATATAGTTGCgagaaatgtaattataatacacGGTGGAAAATTGATTTTACAGCACATGCTAAAATTCATTCCGGtaatgaatttaagtgtaaaaaatgtgattataaaacagtgaggaaaagtgatctaatgcaacatgttaaaaatcatacagatgatgaatatatgtgtaaagaatgtgattataaaactgtacggagaaataatctaaagcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacattgtggaTAGATAGTTTAAAgcaacacgtcaaaattcattcaggtgatgaatataagtgtggaatatgtgattataaaacaacgaGGATATATAgtttaaagcaacatgtcaaaattcatactggtgatgaatataaatgtaaggaatgcgactacaaaacaccatggaagcatAATTTAAATgatcatgttaaaattcattcaGGCGAtttatataagtgtaaagaatgtgattttaaaactggacagaaaagtaatctaaagcgacctgtaaaaataaatacacataatgaatataaatgtaaggaatgtgactacaaaacatcatggaaacagagtttaaaggaacacatcaaaattcatataggtgatgaatttaagtgtaaaaaatgtgattataaaacaacgaGGATACATAGtttaaaagaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgactacaaaacaccatggaagcatAATTTAACTgatcatgttaaaattcattcaGGCAAtttatataagtgtaaagaatgtgattttaaaactgtacagaaaagtaatctaaagaaacatgtcaaaattcatactggtgaaaattataagtgtaaagaatgtgattataaaacaatatggatagatagtttaaagcaacatgtcaaaattcatacaggcgacgaatataattgtaaggaatgtgaAGGCGATgtatataagtgtgaagaatgtgattttaaagctgttcagaaatgttatttaaagcgacacatcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattttaaaactatacAGAAAAGTGATCTAAAGCGacacgtcaaaattcacactggtgacaaatataagtgtaaagaatgtgattataaaacgacgAGGATAGATAGTTTGAAgcagcatgtcaaaattcatacaggtgatgaatataaatgtaatgaatgtgactacaaaacgccatggaagcagaatttaaaggatcatgtcaaaattcatactggtgaaaaatataagtgtaaagaatgtaattataaaacaacaagGATACATCGTTTAAagcaacacatcaaaattcatgtCTAA
Protein Sequence
MNIDSVDFIESSAIKSEKSNLKKHVKIHTGDKYKCKECDFKTGQKSNLKKHVKIHTGDKYKCKECDFKTGQKSNLKKHVKIHTGDKYKCKECDFKTGQKSNLKKHVKIHTGDKYKCKECDFKTGQKSNLKKHVKIHTGDKYKCKECDFKTGQKSNLKKHVKIHTGDKYKCKECNFKTPQIFSPSPHLESGGNEYVCNQCNYTTLNKNYLKRHVKIHNSAAYSCEKCNYNTRWKIDFTAHAKIHSGNEFKCKKCDYKTVRKSDLMQHVKNHTDDEYMCKECDYKTVRRNNLKQHVKIHTGDKYKCKECDYKTLWIDSLKQHVKIHSGDEYKCGICDYKTTRIYSLKQHVKIHTGDEYKCKECDYKTPWKHNLNDHVKIHSGDLYKCKECDFKTGQKSNLKRPVKINTHNEYKCKECDYKTSWKQSLKEHIKIHIGDEFKCKKCDYKTTRIHSLKEHVKIHTGDEYKCKECDYKTPWKHNLTDHVKIHSGNLYKCKECDFKTVQKSNLKKHVKIHTGENYKCKECDYKTIWIDSLKQHVKIHTGDEYNCKECEGDVYKCEECDFKAVQKCYLKRHIKIHTGDEYKCKECDFKTIQKSDLKRHVKIHTGDKYKCKECDYKTTRIDSLKQHVKIHTGDEYKCNECDYKTPWKQNLKDHVKIHTGEKYKCKECNYKTTRIHRLKQHIKIHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-