Lyun017178.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002341.1:1771304-1782000[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0021 0.03 14.9 1.0 1 23 89 111 89 111 0.98
2 19 0.041 0.58 10.8 0.5 1 23 116 138 116 138 0.98
3 19 0.033 0.47 11.1 0.6 1 23 143 165 143 165 0.98
4 19 4.2e-06 6e-05 23.4 1.8 1 23 170 192 170 192 0.99
5 19 4.2e-06 6e-05 23.4 1.8 1 23 197 219 197 219 0.99
6 19 2.4e-05 0.00034 21.0 0.8 1 23 224 246 224 246 0.99
7 19 0.0012 0.017 15.7 2.0 1 23 251 273 251 273 0.99
8 19 1.8e-05 0.00025 21.4 1.6 1 23 278 300 278 300 0.99
9 19 4.2e-06 6e-05 23.4 1.8 1 23 305 327 305 327 0.99
10 19 0.0018 0.026 15.1 1.4 1 23 332 354 332 354 0.99
11 19 0.23 3.3 8.5 1.1 1 23 486 508 486 508 0.97
12 19 0.00077 0.011 16.3 0.7 1 23 513 535 513 535 0.99
13 19 0.018 0.26 11.9 2.5 1 23 540 562 540 562 0.98
14 19 0.18 2.6 8.8 2.0 1 23 572 594 572 594 0.97
15 19 0.011 0.16 12.6 3.6 1 23 599 621 599 621 0.98
16 19 7.9e-05 0.0011 19.4 0.8 1 23 626 648 626 648 0.99
17 19 0.036 0.51 11.0 0.6 1 23 653 675 653 675 0.98
18 19 1.9e-05 0.00027 21.3 1.6 1 23 680 702 680 702 0.99
19 19 5.4e-05 0.00076 19.9 2.6 1 23 707 729 707 729 0.99

Sequence Information

Coding Sequence
atgGATGTCGATTGTGTCCAAAgtagtgcaataaaatctgaagtgattttaacagaaacgtttTCGTTTTGCGAACAAACCAGAGATTATGGGGAAATAGAACTAAAAACAGAGCCAGTAGATTatgaagaatcttttaaatgtaaggaagaagATGTTTTTGTAGAGCAGATGGACATGCATGCTGCTCCGATGCAAAAATTTTCTTGTGATAAGTATGATTTTATGAcgatggaaaaaaattgtatacaagaacactcaaaatatatttgtaatgaatgtaattataccacatCAATCAAAAGATATCTAATgagacatgttaaaattcatacaagtgatgtatataactgtaaagaatgtgattataaaacaatatggcaAAGGAGTCTacaggaacatatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattttaagacACCATGGCAAAgaaatctaaaggaacatgtcaacaTCCATacaggtgttgaatataagtgtaaagaatgtgattataaaacagtgcgaaaaggtaatctaaagaaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcgaaaaggtaatctaaagaaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaaagATGCCCTGAAGGaccatatcaaaattcatacaggtgttgaatataagtgtaaagaatgtgattataaaacggtgcagAAAtatcgtctaaaggaacatgtaaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacagtgcaaaaaggtaatctaaagaaacatgtcaaaatccatacggttgatgaatataagtgtaaagaatgtgattataaaacagtgcgaaaaggtaatctaaagaaacatatcaaaattcatacaggcgacaaatatgagtgtaaagaatgtgattataaaacaatgtggcaaagtaatctaaacaaacatattaaaagaCACAGACCCGGAGTAAAATTAATCTCTACAATGGATGTCGATTCTATTGAAAGTTGttcaataaaatctgaagtggTTTTAACAGAAACGTTTTCGTTTTCTGGACAATACAGAGATTATGGggaaaaagaactaaaaacagaAGCAGTAGATTAccaagaatcttttaaatgtaaggaagaagATATTTTTGTAGAGCAGATAGACGTGCATGCTGCTCCGATGCAACAATTTTCTTATGACGAATATGATTTTAtgacaatggaaaaaaattctctactagaacatttgaaaattattaaaaacgttaCAACGCAGTTAGAATGTTCAGTAAAAAAGCGTTTCGGGATTCATAAGAGGGTAGATGATAAAGATATTTCAAAAAGTgataacaaatatatttgtaatgaatgtaattataccacattAATCAAAAGATATCTAAgaagacatgttaaaattcataaagaggctgaatataagtgtaaagtatgtgattataaaacagtatggcaaagtaatctaaaccaacatatcaaaattcatgcaggtgatgaacataaatgtaaagaatgtgactacaaaacagtgCGAATAGAtcgtctaaagcaacatgtcaaaattcataaaggagctgaatataaatgtgttgaatataagtgtaacaaatgtgattataaaacagcatggcaaagTAGGCTAAAGAAACATGGCAAACTTCATACAAATAATGaacataaatgtaaagaatgtgactacaaaacggTGCGGAAATATCGCCTAAAGGaacatgcaaaaattcatacagatgatgaatataagtgtaaagaatgtgattataaaacagtacgcaAAGATGCTCTGAAGgaccatgtcaaaattcatacaggtgttgcgtataagtgtaaagaatgtgattataatacagTGTGGCAAAGGGCTCttaagcaacatgtcaaaattcatacaggcgacaaatataagtgtaaagaatgtgagtataaaacagtgcaaaaaggCAATCTAAAGaagcatataaaaattcatacaggtgacaaatatgagtgtaaagaatgtgattataaaacaatgtataaaagtaatctaaacaaacatattaaaagGCACAGGTGA
Protein Sequence
MDVDCVQSSAIKSEVILTETFSFCEQTRDYGEIELKTEPVDYEESFKCKEEDVFVEQMDMHAAPMQKFSCDKYDFMTMEKNCIQEHSKYICNECNYTTSIKRYLMRHVKIHTSDVYNCKECDYKTIWQRSLQEHIKIHTGDEYKCKECDFKTPWQRNLKEHVNIHTGVEYKCKECDYKTVRKGNLKKHIKIHTGDEYKCKECDYKTVRKGNLKKHIKIHTGDEYKCKECDYKTVRKDALKDHIKIHTGVEYKCKECDYKTVQKYRLKEHVKIHTGDEYKCKECDYKTVQKGNLKKHVKIHTVDEYKCKECDYKTVRKGNLKKHIKIHTGDKYECKECDYKTMWQSNLNKHIKRHRPGVKLISTMDVDSIESCSIKSEVVLTETFSFSGQYRDYGEKELKTEAVDYQESFKCKEEDIFVEQIDVHAAPMQQFSYDEYDFMTMEKNSLLEHLKIIKNVTTQLECSVKKRFGIHKRVDDKDISKSDNKYICNECNYTTLIKRYLRRHVKIHKEAEYKCKVCDYKTVWQSNLNQHIKIHAGDEHKCKECDYKTVRIDRLKQHVKIHKGAEYKCVEYKCNKCDYKTAWQSRLKKHGKLHTNNEHKCKECDYKTVRKYRLKEHAKIHTDDEYKCKECDYKTVRKDALKDHVKIHTGVAYKCKECDYNTVWQRALKQHVKIHTGDKYKCKECEYKTVQKGNLKKHIKIHTGDKYECKECDYKTMYKSNLNKHIKRHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-