Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002375.1:3532604-3535522[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0045 0.064 13.8 1.0 1 23 152 174 152 174 0.98

2 26 0.0056 0.079 13.6 3.0 1 23 179 201 179 201 0.98

3 26 1.7e-05 0.00024 21.5 1.8 1 23 206 228 206 228 0.99

4 26 0.015 0.21 12.2 2.4 1 23 233 255 233 255 0.98

5 26 0.00026 0.0036 17.8 2.1 1 23 260 282 260 282 0.99

6 26 0.0051 0.073 13.7 2.6 1 23 287 309 287 309 0.98

7 26 4.8e-05 0.00069 20.1 1.1 1 23 314 336 314 336 0.98

8 26 0.00037 0.0052 17.3 3.5 2 23 342 363 341 363 0.96

9 26 0.041 0.57 10.9 0.7 1 23 368 390 368 390 0.98

10 26 0.0014 0.019 15.5 0.7 1 23 395 417 395 417 0.98

11 26 0.011 0.16 12.6 2.5 1 23 422 444 422 444 0.98

12 26 0.011 0.16 12.6 0.6 1 23 449 471 449 471 0.98

13 26 0.088 1.2 9.8 0.8 1 17 476 492 476 493 0.94

14 26 0.003 0.043 14.4 1.1 1 23 503 525 503 525 0.99

15 26 0.041 0.57 10.9 0.7 1 23 530 552 530 552 0.98

16 26 0.0052 0.074 13.7 0.5 1 23 557 579 557 579 0.97

17 26 0.00081 0.012 16.2 0.6 1 23 584 606 584 606 0.98

18 26 0.004 0.056 14.0 1.0 1 23 638 660 638 660 0.99

19 26 0.022 0.31 11.7 0.6 1 23 665 687 665 687 0.98

20 26 0.85 12 6.7 0.3 1 23 692 714 692 714 0.96

21 26 0.025 0.35 11.5 1.0 1 17 719 735 719 736 0.95

22 26 0.003 0.043 14.4 1.1 1 23 746 768 746 768 0.99

23 26 0.041 0.57 10.9 0.7 1 23 773 795 773 795 0.98

24 26 1.7 24 5.8 0.4 1 23 800 822 800 822 0.96

25 26 0.00081 0.012 16.2 0.6 1 23 854 876 854 876 0.98

26 26 0.00038 0.0054 17.2 1.2 1 21 911 931 911 932 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0045	0.064	13.8	1.0	1	23	152	174	152	174	0.98
2	26	0.0056	0.079	13.6	3.0	1	23	179	201	179	201	0.98
3	26	1.7e-05	0.00024	21.5	1.8	1	23	206	228	206	228	0.99
4	26	0.015	0.21	12.2	2.4	1	23	233	255	233	255	0.98
5	26	0.00026	0.0036	17.8	2.1	1	23	260	282	260	282	0.99
6	26	0.0051	0.073	13.7	2.6	1	23	287	309	287	309	0.98
7	26	4.8e-05	0.00069	20.1	1.1	1	23	314	336	314	336	0.98
8	26	0.00037	0.0052	17.3	3.5	2	23	342	363	341	363	0.96
9	26	0.041	0.57	10.9	0.7	1	23	368	390	368	390	0.98
10	26	0.0014	0.019	15.5	0.7	1	23	395	417	395	417	0.98
11	26	0.011	0.16	12.6	2.5	1	23	422	444	422	444	0.98
12	26	0.011	0.16	12.6	0.6	1	23	449	471	449	471	0.98
13	26	0.088	1.2	9.8	0.8	1	17	476	492	476	493	0.94
14	26	0.003	0.043	14.4	1.1	1	23	503	525	503	525	0.99
15	26	0.041	0.57	10.9	0.7	1	23	530	552	530	552	0.98
16	26	0.0052	0.074	13.7	0.5	1	23	557	579	557	579	0.97
17	26	0.00081	0.012	16.2	0.6	1	23	584	606	584	606	0.98
18	26	0.004	0.056	14.0	1.0	1	23	638	660	638	660	0.99
19	26	0.022	0.31	11.7	0.6	1	23	665	687	665	687	0.98
20	26	0.85	12	6.7	0.3	1	23	692	714	692	714	0.96
21	26	0.025	0.35	11.5	1.0	1	17	719	735	719	736	0.95
22	26	0.003	0.043	14.4	1.1	1	23	746	768	746	768	0.99
23	26	0.041	0.57	10.9	0.7	1	23	773	795	773	795	0.98
24	26	1.7	24	5.8	0.4	1	23	800	822	800	822	0.96
25	26	0.00081	0.012	16.2	0.6	1	23	854	876	854	876	0.98
26	26	0.00038	0.0054	17.2	1.2	1	21	911	931	911	932	0.95

Sequence Information

Coding Sequence: ATGGATATCGACTCGGTAgactttattgaaagttgtgttATAAAATCGGAAGTGATTTTtacagaaacattttctttttgtgggaaatacGAAGatTGTGGAAGTAAGGAACTGAAACAGGAGTCAGTAGATTACGAAGAATCACTTCAacctaaagaagaagaagatctaGCAGAACCCATAGATACACATGCTACTACAATGCAAAAAGATTTTTGTAATGACTATAATTTTACAACAATTGGAGAAAATTCTCTAGTAGAACTTTTGAAAGCTCCTAAAAGCATTCAATACTCTTGTAGAGAATGTGACTTTACAAACCAGttagaattttcaataaaagaccATACGAGCATTCACAATGGTGgatataatattgaagaatgtaattttaaaactccACAGATATTCTCTTCATCACCACagttgaaaattcaaaaaagtgagaATGAATAcgtttgtaatgaatgtaattacaccacattgAACAAAAATGATCTAAAGAGACATGTGAAGATTCACAAAAGTGCTACATATTGTTGcgagaaatgtgattataaaacagtgagtaAAAGTTATCTattgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgatttcaaaacagtacagaaaagtaatctaacgcaacatattaaaattcatactggtgacaaatataggtgtaaagagtgtgattataaaacagtatggaaaagtcatctaaaggaacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtaattataaaacagtacagaaaagttatctaatgcaacatgtcaaaattcatactggtgacaaatttaagtgtaaagagtgtgattataaaacggtatggaaaagtcatctaaaggaacatatcaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaatcagtacgaaaaagtaatctaatggaacatgtcaaaattcatactggtgatgaatgtaaatgtaaagaatgtgattataaaacagtgcagaaaagtaatttaacgcaacatgtaaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaaacaatatggaaaagtaatataataaaacatgtcaaaattcatactggtgacaagtatatgtgtaaagagtgtgcttataaaacagtacagaaaagtagtctaatgcaacatgtcagaattcatactggtgacaaatataagtgtaaagagtgtgattataaaactgtatggaaaagtcatctaaaagagcatgtcaaaattcatactggcgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaagtaatctattggaacatgtcaaaattcatactggtgttgaatataactgtaaagaatgtgattataaaacagtacagaaaagtaatctaacgCAACCTGCACAAATTCATActagtgatgaatataagtgtaaagaatgcgattataaaacaatatggaaaagtaatctaacgcaacatgtaaaaattcatactggtgacgaatataaatgtaaagaatgtgattataaaacaatatggaaaagtaatataataaaacatgtcaaaattcatactggtgacaaatataagtgcatagaatgtgattataaatcagtaCGGAAGAGTAATCTaatggaacatgtcaaaattcatactggcgacgaatataagtgtaaagaatgtgattataaatcagtaccgaaaagtaatctaatggaACATGTCAAACTTCATACTGGTAACAAATATATGTCTAAAGAGTGTgcttataaaacagtacagataaataatataatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacaatatggaaaagtaatctaaaggaacatgtcaaaattcatactggcgacgaatataagtgtaaagaatgtgattataaaacagtacagataaataatataatgcaacatgtcaaaattcatactggtgacaaatataagtgcatagaatgtgattataaaacaatatggaaaagtaatctaatggaacatgtcaaaattcatactggcgacgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaacgCAACCTGCACAAATTCATActagtgatgaatataagtgtaaagaatgcgattataaaacaatatggaaaagtaatctaacgcaacatgtaaaaattcatactggtgacgaatataaatgtaaagaatgtgattataaaacaatatggaaaagtaatataataaaacatgtcaaaattcatactggtgacaaatataagtgcatagaatgtgattataaaacaatatggaaaagtaatctaatggaACATGTCAAACTTCATACTGGTAACAAATATATGTCTAAAGAGTGTgcttataaaacagtacagataaataatataatgcaacatgtcaaaattcatactggcgacgaatataagtgtaaagaatgtgattataaatcagtaccgaaaagtaatctaatggaACATGTCAAACTTCATACTGGTAACAAATATATGTCTAAAGAGTGTgcttataaaacagtacagataaataatataatgcaacatgtcaaaattcatactggtcatactggtgacaaatataaatgtaaagaatgtgattataaaacggtacagaaaagtaatctaaaggaacatgtcaaattttatacatgTGTCGAAATGCATGTAAGTGATGAATATAAAGTAAAGAATGATTTTAAGACACTATGA
Protein Sequence: MDIDSVDFIESCVIKSEVIFTETFSFCGKYEDCGSKELKQESVDYEESLQPKEEEDLAEPIDTHATTMQKDFCNDYNFTTIGENSLVELLKAPKSIQYSCRECDFTNQLEFSIKDHTSIHNGGYNIEECNFKTPQIFSSSPQLKIQKSENEYVCNECNYTTLNKNDLKRHVKIHKSATYCCEKCDYKTVSKSYLLQHVKIHTGDKYKCKECDFKTVQKSNLTQHIKIHTGDKYRCKECDYKTVWKSHLKEHVKIHTGDEYKCKECNYKTVQKSYLMQHVKIHTGDKFKCKECDYKTVWKSHLKEHIKIHTGDEYKCKECDYKSVRKSNLMEHVKIHTGDECKCKECDYKTVQKSNLTQHVKIHTGDEYKCKECDYKTIWKSNIIKHVKIHTGDKYMCKECAYKTVQKSSLMQHVRIHTGDKYKCKECDYKTVWKSHLKEHVKIHTGDEYKCKECDYKTIWKSNLLEHVKIHTGVEYNCKECDYKTVQKSNLTQPAQIHTSDEYKCKECDYKTIWKSNLTQHVKIHTGDEYKCKECDYKTIWKSNIIKHVKIHTGDKYKCIECDYKSVRKSNLMEHVKIHTGDEYKCKECDYKSVPKSNLMEHVKLHTGNKYMSKECAYKTVQINNIMQHVKIHTGDKYKCKECDYKTIWKSNLKEHVKIHTGDEYKCKECDYKTVQINNIMQHVKIHTGDKYKCIECDYKTIWKSNLMEHVKIHTGDEYKCKECDYKTVQKSNLTQPAQIHTSDEYKCKECDYKTIWKSNLTQHVKIHTGDEYKCKECDYKTIWKSNIIKHVKIHTGDKYKCIECDYKTIWKSNLMEHVKLHTGNKYMSKECAYKTVQINNIMQHVKIHTGDEYKCKECDYKSVPKSNLMEHVKLHTGNKYMSKECAYKTVQINNIMQHVKIHTGHTGDKYKCKECDYKTVQKSNLKEHVKFYTCVEMHVSDEYKVKNDFKTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -