Lyun009392.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001723.1:310439-317300[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 1 14 6.5 1.5 1 23 98 120 98 120 0.98
2 28 0.0015 0.022 15.3 0.9 1 23 152 174 152 174 0.98
3 28 0.22 3.1 8.6 0.4 1 23 179 201 179 201 0.98
4 28 0.00017 0.0024 18.3 2.8 1 23 206 228 206 228 0.99
5 28 0.5 7.1 7.4 2.4 1 23 233 255 233 255 0.98
6 28 0.00014 0.002 18.6 1.3 1 23 260 282 260 282 0.98
7 28 1.3e-05 0.00019 21.8 1.3 1 23 287 309 287 309 0.98
8 28 0.0041 0.057 14.0 1.4 1 23 314 336 314 336 0.98
9 28 1.2e-05 0.00016 22.0 2.0 1 23 341 363 341 363 0.99
10 28 6.7e-05 0.00095 19.6 1.3 1 23 368 390 368 390 0.98
11 28 0.5 7.1 7.4 2.9 1 23 395 417 395 417 0.98
12 28 0.2 2.9 8.7 2.1 1 23 422 444 422 444 0.98
13 28 0.5 7.1 7.4 2.9 1 23 449 471 449 471 0.98
14 28 1.5 21 5.9 2.4 1 23 476 498 476 498 0.97
15 28 1.5 21 5.9 2.4 1 23 503 525 503 525 0.97
16 28 0.0035 0.049 14.2 1.7 1 23 661 683 661 683 0.98
17 28 0.0068 0.097 13.3 5.4 1 23 713 735 713 735 0.99
18 28 5.7 81 4.1 0.8 1 23 740 762 740 762 0.90
19 28 0.075 1.1 10.0 0.8 1 23 767 789 767 789 0.98
20 28 0.00055 0.0078 16.7 2.0 1 23 794 816 794 816 0.99
21 28 0.12 1.6 9.4 0.9 1 23 821 843 821 843 0.98
22 28 1.6e-05 0.00022 21.6 1.3 1 23 848 870 848 870 0.99
23 28 5.3e-05 0.00075 19.9 1.0 1 23 875 897 875 897 0.98
24 28 0.038 0.53 11.0 2.0 1 23 902 924 902 924 0.98
25 28 0.00032 0.0045 17.5 3.5 1 23 929 951 929 951 0.99
26 28 0.013 0.18 12.5 2.5 1 23 956 978 956 978 0.98
27 28 0.0075 0.11 13.2 0.8 1 23 983 1005 983 1005 0.98
28 28 0.0029 0.041 14.5 0.9 1 23 1010 1032 1010 1032 0.99

Sequence Information

Coding Sequence
ATGGATTGCAACTTGGTAAACTTTATTGAAAACTGTgttataaaatcagaagtgattttatcagaaacattttctttttgtcggaAACACGAAGattGTGGAAGCAAGGAACTAAAATCAGAGCCAGTAGATTATGAAGAATCGCTTAAacctaaagaagaaaatgatctaGCACAACCCATAGATGCACATGCTACTTCGATGCAAAGAGATTTTtgtaatgattataattttataacgaTTGAAGAAAATTCTCTAATAGATCCTTTGAAAGCTCCTAAAAGTGTTATATACTCTTGTAACgaatgtaactttacaacccagttacaattttccattaaagagcATACGAGGATTCACACTGATGGATGtaatattgaagaatgtaattttaagtcacCACAGATTTTCTCTCTATCATCACagttaaaaattccaaaaagtGGGAATGAATATGTTTGTAATGAATGCAATTACACTACAATGAATGAAAATTATCTAAAGAGACACGTGAAGATTCACAAAAGTGCTACATATAGTTGCgaggaatgtgattatattaCACGGTGGAAAGGTCACTTTATAGCACATGCTAAAATTCattctggtaatgaatataagtgtgaaaaatgtgattataaaacaattagaaaatatagtTTAAAGcaacatcttaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaatgaacatgtcaaaattcatacaagtgatgaatataagtgtaaagaatgtgattttaaaactgtacggaaaagtgatctaatgcaacatgtcaaaattcatacaggtgatgaatattcatgtaaagaatgtgattataaaactgtacggaaaagtaatctaaaggaacatatcaaaattcatacaggtgaggaatataaatgtaaagaatgtgattataaaacagtgtcaAAAAATCGTCTAacggaacatgtcaaaattcatacaggcgatgaatataagtgtaaaaagtgtgattataaaacggtacggaaaagtaatctgatccaacatatcaaaattcatacaggtgataaatataactgtaaagaatgtgattataaaactgtacggaaaagtaatctaaaggaacatgtcaaaattcatactggggaaagatataagtgtaaagaatgtgattataagacagtatggaaaaattgtctaaaggaacatgtcaaaattcatacgagtgatgaatataagtgtaaagaatgtggttataaaacagtatggaaaaattgtctaaatgaacatgtaaaaattcatacaagtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgatgaatataactgtaaagaatgtgattataaaacagtatggaaaaattgtttaaaggagcatgtcaaaattcatacaggtgatgaatataactgtaaagaatgtgattataaaacagtatggaaaaattgtttaaaggagcatgtcaaaattcatacaagtgatgtatataagtgtgaagaatataaaattaagaaacttagTTTATCTTATACAATGGATATAGCCTCAGTAGACATTATTGAAGGtggtgctataaaatcagaagagATTTTAACAgagactttttctttttgtgagaAATACGAAGattGTGGGGCTAAGGAACTAAAAACAGAGCCAGTAGATTGCGAAGAATCGCTTAAacctaaagaagaaaatgatctatcacaacccaaaaatacacatacGGCATCTAACTTTACAAGTCAGTTAGAATGTTCTATAAAAGAACATACGAGGATTCACAGTGACGgatataatattgaagaatataattttaagacGCCGCAAATTTTCTCTCTATCACCACATTCGAAAACTCCAAGAAGTGGGAATGAATAtgcttgtaatgaatgtaattacaccacattgaacaaaaattatctaaagagacatatgaaaattcacaaaaGTGTTAGTTACGAGAAATGGGATTATAATATGTGGTGGAAAAGTCACTTTACAGCACATGCAAACATTAATTCAGAtattgaatataagtgtaaaaaatgtgattataaaacagctaggaaaaattgtttaaagcaacatgttaaaattcataaaggtgatgaatttaactgtaaagaatgtgattataaaacattgtggaaagatcttttaaagcaacatgtcaaaattcatacaggcgatgaatataagtgtaaagagtgtgattataaaacagtatggaaaaatcttctaaaggaacatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcgcaAAAGTCGTCTAAAGgaccatgtcaaaattcatacgggcgaggaatataagtgtaaagaatgtgattttaaaactgtatggaaacgTGATCTAATgcaacacgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaactgtacggaaaagcgatctaatgcaacatatcaaaattcatactggtgacaaatataactgtaaagaatgtgattataaaactgtacggaaaagcgatctaatgcaacatatcaaaattcatactggtgacaaatataactgtaaagaatgtgattataaaacagtatggaaaagtcatctaaaggaacatgttaaaattcatacaggtaatgaatataagtgtaaagaatgtcattataaaactgtacggaaaagtgatctaatgcaacatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattacaaaacagtatggaaaagtcatctaaaggaacatgttaaaattcatgcaggtgatgaatataagtgcaaagaatgtgattataaaacggtatggaaaagtaatctaatgcaacatgccaaaattcatactggtgacaaatataaatgtgaagaatgtgattataaaacagtctTGAAAAAACTTCTGAAGGAACATCTCAAGATTCATgtaggtgatgaatataaatgtaaaggaTGA
Protein Sequence
MDCNLVNFIENCVIKSEVILSETFSFCRKHEDCGSKELKSEPVDYEESLKPKEENDLAQPIDAHATSMQRDFCNDYNFITIEENSLIDPLKAPKSVIYSCNECNFTTQLQFSIKEHTRIHTDGCNIEECNFKSPQIFSLSSQLKIPKSGNEYVCNECNYTTMNENYLKRHVKIHKSATYSCEECDYITRWKGHFIAHAKIHSGNEYKCEKCDYKTIRKYSLKQHLKIHTGEEYKCKECDYKTVWKNCLNEHVKIHTSDEYKCKECDFKTVRKSDLMQHVKIHTGDEYSCKECDYKTVRKSNLKEHIKIHTGEEYKCKECDYKTVSKNRLTEHVKIHTGDEYKCKKCDYKTVRKSNLIQHIKIHTGDKYNCKECDYKTVRKSNLKEHVKIHTGERYKCKECDYKTVWKNCLKEHVKIHTSDEYKCKECGYKTVWKNCLNEHVKIHTSDEYKCKECDYKTVWKNCLKEHVKIHTGDEYNCKECDYKTVWKNCLKEHVKIHTGDEYNCKECDYKTVWKNCLKEHVKIHTSDVYKCEEYKIKKLSLSYTMDIASVDIIEGGAIKSEEILTETFSFCEKYEDCGAKELKTEPVDCEESLKPKEENDLSQPKNTHTASNFTSQLECSIKEHTRIHSDGYNIEEYNFKTPQIFSLSPHSKTPRSGNEYACNECNYTTLNKNYLKRHMKIHKSVSYEKWDYNMWWKSHFTAHANINSDIEYKCKKCDYKTARKNCLKQHVKIHKGDEFNCKECDYKTLWKDLLKQHVKIHTGDEYKCKECDYKTVWKNLLKEHVKIHTGDEYKCKECDYKTVRKSRLKDHVKIHTGEEYKCKECDFKTVWKRDLMQHVKIHTGDEYKCKECDYKTVRKSDLMQHIKIHTGDKYNCKECDYKTVRKSDLMQHIKIHTGDKYNCKECDYKTVWKSHLKEHVKIHTGNEYKCKECHYKTVRKSDLMQHVKIHTGDEYKCKECDYKTVWKSHLKEHVKIHAGDEYKCKECDYKTVWKSNLMQHAKIHTGDKYKCEECDYKTVLKKLLKEHLKIHVGDEYKCKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-