Lyun014861.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002119.1:3479637-3483969[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 43 1.7 24 5.8 2.0 1 23 105 127 105 127 0.95
2 43 0.18 2.6 8.8 0.9 1 23 132 154 132 154 0.98
3 43 2.2 31 5.4 2.0 1 23 159 181 159 181 0.95
4 43 0.17 2.5 8.9 0.5 1 23 186 208 186 208 0.98
5 43 0.0021 0.03 14.9 4.9 1 23 213 235 213 235 0.99
6 43 0.44 6.2 7.6 1.9 1 23 240 262 240 262 0.98
7 43 0.016 0.22 12.2 1.4 1 23 267 289 267 289 0.98
8 43 0.13 1.8 9.3 0.4 1 23 294 316 294 316 0.98
9 43 0.0012 0.017 15.6 1.3 1 23 321 343 321 343 0.99
10 43 0.00076 0.011 16.3 1.8 1 23 348 370 348 370 0.99
11 43 8.6e-05 0.0012 19.3 3.1 1 23 375 397 375 397 0.98
12 43 0.013 0.18 12.4 3.1 1 23 402 424 402 424 0.98
13 43 0.15 2.2 9.1 3.3 1 23 429 451 429 451 0.97
14 43 5.2 73 4.2 0.7 1 23 456 478 456 478 0.94
15 43 0.027 0.39 11.4 5.0 2 23 484 505 483 505 0.96
16 43 0.0015 0.021 15.4 2.3 1 23 510 532 510 532 0.99
17 43 8.6e-05 0.0012 19.3 3.1 1 23 537 559 537 559 0.98
18 43 0.013 0.18 12.4 3.1 1 23 564 586 564 586 0.98
19 43 0.15 2.2 9.1 3.3 1 23 591 613 591 613 0.97
20 43 5.2 73 4.2 0.7 1 23 618 640 618 640 0.94
21 43 0.027 0.39 11.4 5.0 2 23 646 667 645 667 0.96
22 43 0.04 0.56 10.9 0.7 1 23 672 694 672 694 0.97
23 43 0.03 0.42 11.3 2.6 2 23 700 721 699 721 0.97
24 43 0.2 2.9 8.7 3.7 1 23 726 748 726 748 0.97
25 43 0.18 2.5 8.8 1.1 1 23 807 829 807 829 0.98
26 43 0.18 2.5 8.8 1.1 1 23 834 856 834 856 0.98
27 43 0.0012 0.017 15.6 2.8 1 23 861 883 861 883 0.98
28 43 0.2 2.9 8.7 3.7 1 23 888 910 888 910 0.97
29 43 0.0012 0.017 15.6 2.8 1 23 915 937 915 937 0.98
30 43 0.18 2.5 8.8 1.1 1 23 942 964 942 964 0.98
31 43 0.045 0.63 10.7 1.0 1 23 969 991 969 991 0.97
32 43 4.9 69 4.3 6.0 2 23 997 1018 996 1018 0.95
33 43 0.064 0.91 10.2 0.6 1 23 1023 1045 1023 1045 0.97
34 43 0.027 0.39 11.4 5.0 2 23 1051 1072 1050 1072 0.96
35 43 0.00076 0.011 16.3 1.8 1 23 1077 1099 1077 1099 0.99
36 43 8.6e-05 0.0012 19.3 3.1 1 23 1104 1126 1104 1126 0.98
37 43 0.013 0.18 12.4 3.1 1 23 1131 1153 1131 1153 0.98
38 43 0.15 2.2 9.1 3.3 1 23 1158 1180 1158 1180 0.97
39 43 5.2 73 4.2 0.7 1 23 1185 1207 1185 1207 0.94
40 43 0.027 0.39 11.4 5.0 2 23 1213 1234 1212 1234 0.96
41 43 0.04 0.56 10.9 0.7 1 23 1239 1261 1239 1261 0.97
42 43 0.03 0.42 11.3 2.6 2 23 1267 1288 1266 1288 0.97
43 43 0.076 1.1 10.0 1.3 1 23 1293 1315 1293 1315 0.97

Sequence Information

Coding Sequence
ATGGAAGTCaattataatgaaagttatccaataaaatctgaagttattgtaaatgaaacattttccaATTGTGTAAAACGTGAAGGTGAAGTGAAAACGGAACCGTTAGATTTGGAGGAAGCTTTTAAATGCAAAGAAGACCATCATCTTGAAGAGCATACAACTATACACAATATACCGATGTGTCAATATGCTTATAACGAATGTCAGTTCATTGTAATGGAAAAAGATTCTTTAAAAGAGTGCAGCATTAAGAAATCACAAATTTTCTCTATGTCATCACACTTGAAACCTTTAAAAAATGGTGACAAATATActtgtaaggaatgtaattataaaacattgtggaacaaaaatctaaaaaaacatgtaaaaatccaTACTAACGAAGGATATAGGTGTGAAGAATGTGCATATAAGACAACATGGAAACAAAATCTTaagcaacatgtaaaaattcatactggcgatgagtataagtgtaaggaatgtaattataaaacattgtggaacaaaaatctaaaacaacaTGTAAAAATCCATACAAACGAAggatataagtgtgaagaatgtgcaTATAAGACAACATGGAAACAGAATCTTgagcaacatgtaaaaattcatactggcgatgagtataagtgtaaggaatgtaattataaaacgccAAGAAAACATAGTTTAAAGGAACATAgaaaaattcatagtggtgatgaatataaatgtacaaaatgtgattttaaaacaccatggaaaaagAGTCTAAAGGATCATACAAACATTCATAATGGccatgaatataagtgtaaggaatgtgactacaaaacaccttGGAAACggaatctaaagcaacatgtaaaaattcatactggtgatgaatataagtgtaacgaatgtgattttaaaacaccatggaaaaagAATCTAGAGGGACATTTGCAAATTCATGccggtaatgaatataagtgtacagaatgtgactataaaactgtgAGGAAAGATagactaaaggaacatgtgaaaattcatagtagtgatgagtataagtgtaacgaatgtgactataaaaccaCGAGGAAAGAAaggctaaaggaacatgtcaaaattcatactggtgaagagtacaagtgtaacgaatgtgactataaatcaGTACGAAAAAGTTGTCTACAGAGACATATGATCATTCATAAGAGCGATCCATATAAGTGTAatcaatgtaattataaaacatcgCGAAAACAGAGTATaaagcaacatgtaaaaattcatagtggcgatgaatataagtgtaatgaatgtgattataaaacactgcggAAAGAGTGCCTAaaagaacatgtgaaaattcatactaatgatgaatataagtgtaatgaatgtatctataaaacaccatggaaacagaatctaaagcgACATGTAGAACTGCATTCTGGTGATGAAtgtaagtgtaaggaatgtgattataaaacactgagGAAAGAGAGCTTAAagaaacatatgaaaattcatactaatgatgaatataagtgtaatgaatgtaactataaaaccaCGAGGAAAGAAaggctaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaacgaatgtgactataaatcaGTACGAAAAAGTTGTCTACAAAGACATATGATCATTCATAAGAGCGATCCATATAAGTGTAatcaatgtaattataaaacatcgCGAAAACAGAGTATaaagcaacatgtaaaaattcatagtggcgatgaatataagtgtaatgaatgtgattataaaacactgcggAAAGAGTGCCTAaaagaacatgtgaaaattcatactaatgatgaatataagtgtaatgaatgtatctataaaacaccatggaaacagaatctaaagcgACATGTAGAACTGCATTCTGGTGATGAAtgtaagtgtaaggaatgtgattataaaacactgagGAAAGAGAGCTTAAagaaacatatgaaaattcatactaatgatgaatataagtgtaatgaatgtaactataaaacaccatggaaacaaaatctaaagCGACATGCAGAAATTCATTCTGGTGATGAAagtaagtgtaaggaatgtgattataaaacactgaaGAAAGAGAGCTTAAagaaacatatgaaaattcatactggcgatgagtataagtgtaaggaatgtgattataaaacactgcggAAAGAGTGCCTAaaagaacatgtgaaaattcatactggtgatgaatataagtgtaatgaatgtatctataaaacaccatggaaaaagAGTCTAAAGGATCATACAAACATTCATAATGGccatgaatataagtgtaatgaatgtatctataaaacaccatggaaaaagAGTCTAAAGGATCATACAAACATTCATAATGGccatgaatataagtgtaacgaatgtgattttaaaacaccatggaaaaagAGTCTAAAGGATCATACAAACATTCATAATGGccatgaatataagtgtaacgaatgtgattttaaaacaccatggaaaaagAGTCTAAAGGATCATACAAACATTCATAATGGccatgaatataagtgtaaggaatgtgattataaaacactgagGAAAGAGAGCTTAAagaaacatatgaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacactgcggAAAGAGTGCCTAaaagaacatgtgaaaattcatactggcgatgagtataagtgtaaggaatgtgattataaaacactgagGAAAGAGAGCTTAAagaaacatatgaaaattcatactggtgatgaatataagtgtaacgaatgtgattttaaaacaccatggaaaaagAGTCTAAAGGATCATACAAACATTCATAATGGccatgaatataagtgtaatgaatgtaactataaaacaccatggaaacagaatctaaagcgACATGTAGAACTGCATTCTGGTGATGAAtgtaagtgtaaggaatgtgattataaaacactgcggAAAGAGTGCCTAaaagaacatgtgaaaattcatactggtgatgaatataagtgtaacgaatgtgattttaaaacaccatggaaacagaatctaaagcgACATGCAGAAATTCATTCTGGCGATGAAtgtaagtgtaaggaatgtgattataaaacactgagGAAAGAGAGCTTAAagaaacatatgaaaattcatactaatgatgaatataagtgtaacgaatgtgactataaaaccaCGAGGAAAGAAaggctaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaacgaatgtgactataaatcaGTACGAAAAAGTTGTCTACAGAGACATATGATCATTCATAAGAGCGATCCATATAAGTGTAatcaatgtaattataaaacatcgCGAAAACAGAGTATaaagcaacatgtaaaaattcatagtggcgatgaatataagtgtaatgaatgtgattataaaacactgcggAAAGAGTGCCTAaaagaacatgtgaaaattcatactaatgatgaatataagtgtaatgaatgtatctataaaacaccatggaaacagaatctaaagcgACATGTAGAACTGCATTCTGGTGATGAAtgtaagtgtaaggaatgtgattataaaacactgagGAAAGAGAGCTTAAagaaacatatgaaaattcatactaatgatgaatataagtgtaatgaatgtaactataaaacaccatggaaacaaaatctaaagCGACATGCAGAAATTCATTCTGGTGATGAAagtaagtgtaaggaatgtgattataaaacactgaaGAAAGAGAGCCTAAagaaacatatgaaaattcatactgatgatgaatataagtgtagtgaatgtgactataaaacagtgtggcaatcTAGTTTTAAAAGACATAAGGCAGTTCACATGGGCGATGAAAGTATACGAAATGCAGATCTATGA
Protein Sequence
MEVNYNESYPIKSEVIVNETFSNCVKREGEVKTEPLDLEEAFKCKEDHHLEEHTTIHNIPMCQYAYNECQFIVMEKDSLKECSIKKSQIFSMSSHLKPLKNGDKYTCKECNYKTLWNKNLKKHVKIHTNEGYRCEECAYKTTWKQNLKQHVKIHTGDEYKCKECNYKTLWNKNLKQHVKIHTNEGYKCEECAYKTTWKQNLEQHVKIHTGDEYKCKECNYKTPRKHSLKEHRKIHSGDEYKCTKCDFKTPWKKSLKDHTNIHNGHEYKCKECDYKTPWKRNLKQHVKIHTGDEYKCNECDFKTPWKKNLEGHLQIHAGNEYKCTECDYKTVRKDRLKEHVKIHSSDEYKCNECDYKTTRKERLKEHVKIHTGEEYKCNECDYKSVRKSCLQRHMIIHKSDPYKCNQCNYKTSRKQSIKQHVKIHSGDEYKCNECDYKTLRKECLKEHVKIHTNDEYKCNECIYKTPWKQNLKRHVELHSGDECKCKECDYKTLRKESLKKHMKIHTNDEYKCNECNYKTTRKERLKEHVKIHTGDEYKCNECDYKSVRKSCLQRHMIIHKSDPYKCNQCNYKTSRKQSIKQHVKIHSGDEYKCNECDYKTLRKECLKEHVKIHTNDEYKCNECIYKTPWKQNLKRHVELHSGDECKCKECDYKTLRKESLKKHMKIHTNDEYKCNECNYKTPWKQNLKRHAEIHSGDESKCKECDYKTLKKESLKKHMKIHTGDEYKCKECDYKTLRKECLKEHVKIHTGDEYKCNECIYKTPWKKSLKDHTNIHNGHEYKCNECIYKTPWKKSLKDHTNIHNGHEYKCNECDFKTPWKKSLKDHTNIHNGHEYKCNECDFKTPWKKSLKDHTNIHNGHEYKCKECDYKTLRKESLKKHMKIHTGDEYKCKECDYKTLRKECLKEHVKIHTGDEYKCKECDYKTLRKESLKKHMKIHTGDEYKCNECDFKTPWKKSLKDHTNIHNGHEYKCNECNYKTPWKQNLKRHVELHSGDECKCKECDYKTLRKECLKEHVKIHTGDEYKCNECDFKTPWKQNLKRHAEIHSGDECKCKECDYKTLRKESLKKHMKIHTNDEYKCNECDYKTTRKERLKEHVKIHTGDEYKCNECDYKSVRKSCLQRHMIIHKSDPYKCNQCNYKTSRKQSIKQHVKIHSGDEYKCNECDYKTLRKECLKEHVKIHTNDEYKCNECIYKTPWKQNLKRHVELHSGDECKCKECDYKTLRKESLKKHMKIHTNDEYKCNECNYKTPWKQNLKRHAEIHSGDESKCKECDYKTLKKESLKKHMKIHTDDEYKCSECDYKTVWQSSFKRHKAVHMGDESIRNADL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-