Lyun000025.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:356221-359016[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.25 3.6 8.3 0.4 1 23 92 114 92 114 0.98
2 28 0.13 1.9 9.3 2.0 1 23 145 167 145 167 0.96
3 28 0.0019 0.026 15.1 1.0 1 23 204 226 204 226 0.99
4 28 0.0019 0.027 15.0 2.0 1 23 231 253 231 253 0.99
5 28 0.43 6.1 7.6 0.3 1 23 258 280 258 280 0.97
6 28 0.17 2.4 8.9 0.9 1 23 285 307 285 307 0.98
7 28 0.00019 0.0027 18.2 1.7 1 23 312 334 312 334 0.99
8 28 0.3 4.3 8.1 0.4 1 23 339 361 339 361 0.97
9 28 0.0029 0.041 14.5 0.4 1 23 366 388 366 388 0.99
10 28 0.00055 0.0078 16.7 2.0 1 23 393 415 393 415 0.99
11 28 0.0027 0.039 14.5 0.9 1 23 420 442 420 442 0.99
12 28 0.019 0.26 11.9 1.4 1 23 447 469 447 469 0.99
13 28 0.0019 0.027 15.0 2.0 1 23 474 496 474 496 0.99
14 28 0.43 6.1 7.6 0.3 1 23 501 523 501 523 0.97
15 28 0.17 2.4 8.9 0.9 1 23 528 550 528 550 0.98
16 28 0.00047 0.0067 16.9 2.2 1 23 555 577 555 577 0.99
17 28 0.3 4.3 8.1 0.4 1 23 582 604 582 604 0.97
18 28 0.0029 0.041 14.5 0.4 1 23 609 631 609 631 0.99
19 28 0.0027 0.039 14.5 0.9 1 23 636 658 636 658 0.99
20 28 0.019 0.26 11.9 1.4 1 23 663 685 663 685 0.99
21 28 0.00022 0.0031 18.0 2.3 1 23 690 712 690 712 0.99
22 28 0.0025 0.035 14.7 0.7 1 23 717 739 717 739 0.99
23 28 0.019 0.26 11.9 1.4 1 23 744 766 744 766 0.99
24 28 0.00022 0.0031 18.0 2.3 1 23 771 793 771 793 0.99
25 28 3.6e-05 0.0005 20.5 1.5 1 23 798 820 798 820 0.99
26 28 0.025 0.35 11.5 1.7 1 23 825 847 825 847 0.99
27 28 0.022 0.31 11.7 1.1 1 23 852 874 852 874 0.98
28 28 0.00041 0.0057 17.2 4.0 1 23 879 901 879 901 0.98

Sequence Information

Coding Sequence
ATGGATATTGATTCAATCgaaaattgtgcaataaaatctgaagttgttttaacagaaacatttacgttttctggaaaatatgaagATTGTGCGAATCAAGAACCGAAAACAGAACCAGCAGTTTATGAggaattgtttaaatgtaaagaagaaaattctGTAGAGCACACTGATATACACGTTTCTCCCAtgcaatgtattaatgaatgtaattttactacATTGGAAAATGATTATCCaatagaacatttgaaaattactaataatgttcaatattcttgtgacgaatgtaactttacaacgcagttagcatcttccataaaagaacatttaaaaattcatggtCAATATATTACAgaggaatgtaattttaagacggcatgtattttttctttaacaccAGCACTCAATACTTCAAGACTTCGCAACGAATACATTTGTAATGCATGTAATTATACCACACTCCTCAGAAGTAATTTAAAGAGACATAGAAAAACTCACCAAGGTGATGACTATACttgtgacaaatataagtgtaaagaatgtgattataaaacactgtggaaaaattgtttaaagaaacatgttaaaattcacactggtgatgaatataagtgtaaagagtgtaattataaaacagtgtggaaaagtaatctaaacgaacacatcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtgcggaaaactCGACTAAAggagcatgtcaaaattcatacaggtaatgaatataagtgtatagaatgtgattataaaacagtgtggaacagtagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtgaaagatgtgattataaaacagtgtggaaaaatcaactaaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcgaaaaaatcaactaaaagagcatgtcaaaattcattcaggtgatgaatataagtgtatagaatgtgattataaaacagtatggaaaagtagtctaaaggaacacatcaaaattcatataggtggtgaatataagtgtgatggatgtgattataaaacggtgtggaaaaGTCAACTAAaagaacacatcaaaattcatacaggtgataaatataagtgtaaagaatgtgactataaaacagtgcggaaagatcgactaaagcaacatgtcaaaattcacactggtgatgaatataagtgtaaagaatgtgattataaaacagtttggaaaagtagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaaaagtgtgattataaaactgtgtggaaaaatcaactaaacgaacatattaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaaactCGACTAAAggagcatgtcaaaattcatacaggtaatgaatataagtgtatagaatgtgattataaaacagtgtggaacagtagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtgaaagatgtgattataaaacagtgtggaaaaatcaactaaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaacaatgtgattataaaacagtgcgaaaaaatcaactaaaagagcatgtcaaaattcattcaggtgatgaatataagtgtatagaatgtgattataaaacagtatggaaaagtagtctaaaggaacacatcaaaattcatataggtggtgaatataagtgtgatggatgtgattataaaacggtgtggaaaaGTCAACTAAaagaacacatcaaaattcatacaggtgataaatataagtgtaaagaatgtgattataaaacagtttggaaaagtagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaaaagtgtgattataaaactgtgtggaaaaatcaactaaacgaacatattaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaagatCGACTAAagcgacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagtgtggaacagtagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaaaagtgtgattataaaactgtgtggaaaaatcaactaaacgaacatattaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaagatCGACTAAagcgacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacagtgcgaaaagatcaaCTAaatcaacatgtcaaaattcatacaggtgatgaatacaagtgtaaacaatgtgattataaaacagtttggaaaaaaagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagattgtgactataaaactgtgtggaaaaatcaattaaatgaacatgtcaaaatgcatacaggtgatgaatataactgtaaagaatgtgattataaaacagtgcggaaaaatcatctaaagcgacatgtcaaaattcatacaggtgatgaatataactgtaaagaatgtgattattaG
Protein Sequence
MDIDSIENCAIKSEVVLTETFTFSGKYEDCANQEPKTEPAVYEELFKCKEENSVEHTDIHVSPMQCINECNFTTLENDYPIEHLKITNNVQYSCDECNFTTQLASSIKEHLKIHGQYITEECNFKTACIFSLTPALNTSRLRNEYICNACNYTTLLRSNLKRHRKTHQGDDYTCDKYKCKECDYKTLWKNCLKKHVKIHTGDEYKCKECNYKTVWKSNLNEHIKIHTGDEYKCKECDYKTVRKTRLKEHVKIHTGNEYKCIECDYKTVWNSSLKEHIKIHTGDEYKCERCDYKTVWKNQLKEHVKIHTGDEYKCKECDYKTVRKNQLKEHVKIHSGDEYKCIECDYKTVWKSSLKEHIKIHIGGEYKCDGCDYKTVWKSQLKEHIKIHTGDKYKCKECDYKTVRKDRLKQHVKIHTGDEYKCKECDYKTVWKSSLKEHIKIHTGDEYKCKKCDYKTVWKNQLNEHIKIHTGDEYKCKECDYKTVRKTRLKEHVKIHTGNEYKCIECDYKTVWNSSLKEHIKIHTGDEYKCERCDYKTVWKNQLKEHVKIHTGDEYKCKQCDYKTVRKNQLKEHVKIHSGDEYKCIECDYKTVWKSSLKEHIKIHIGGEYKCDGCDYKTVWKSQLKEHIKIHTGDKYKCKECDYKTVWKSSLKEHIKIHTGDEYKCKKCDYKTVWKNQLNEHIKIHTGDEYKCKECDYKTVRKDRLKRHVKIHTGDEYKCKDCDYKTVWNSSLKEHIKIHTGDEYKCKKCDYKTVWKNQLNEHIKIHTGDEYKCKECDYKTVRKDRLKRHVKIHTGDEYKCKDCDYKTVRKDQLNQHVKIHTGDEYKCKQCDYKTVWKKSLKEHIKIHTGDEYKCKDCDYKTVWKNQLNEHVKMHTGDEYNCKECDYKTVRKNHLKRHVKIHTGDEYNCKECDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-