Lyun000041.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:505712-508100[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.00046 0.0065 17.0 2.7 1 23 87 109 87 109 0.97
2 23 0.00097 0.014 16.0 2.7 1 23 119 141 119 141 0.99
3 23 0.013 0.18 12.4 1.2 1 23 146 168 146 168 0.98
4 23 0.0017 0.024 15.2 1.4 1 23 173 195 173 195 0.97
5 23 0.016 0.23 12.1 1.4 1 23 200 222 200 222 0.99
6 23 0.0077 0.11 13.1 1.0 1 23 227 249 227 249 0.99
7 23 0.0077 0.11 13.1 1.0 1 23 254 276 254 276 0.99
8 23 2.2e-05 0.00031 21.2 2.3 1 23 281 303 281 303 0.99
9 23 0.016 0.23 12.1 1.4 1 23 308 330 308 330 0.99
10 23 0.0017 0.024 15.2 1.4 1 23 355 377 355 377 0.97
11 23 0.016 0.23 12.1 1.4 1 23 382 404 382 404 0.99
12 23 0.0011 0.016 15.8 2.1 1 23 409 431 409 431 0.99
13 23 0.0024 0.034 14.7 0.6 1 23 436 458 436 458 0.99
14 23 0.0052 0.073 13.7 2.5 1 23 463 485 463 485 0.99
15 23 0.0079 0.11 13.1 0.5 1 23 490 512 490 512 0.99
16 23 0.0089 0.13 12.9 0.8 1 23 517 539 517 539 0.99
17 23 0.015 0.22 12.2 1.0 1 23 544 566 544 566 0.99
18 23 5.9e-05 0.00083 19.8 2.4 1 23 571 593 571 593 0.99
19 23 0.009 0.13 12.9 1.5 1 23 598 620 598 620 0.99
20 23 0.001 0.014 15.9 1.3 1 23 625 647 625 647 0.99
21 23 0.013 0.18 12.4 2.5 1 23 652 674 652 674 0.98
22 23 6.7e-06 9.5e-05 22.8 2.2 1 23 679 701 679 701 0.99
23 23 0.013 0.18 12.4 2.5 1 23 706 728 706 728 0.98

Sequence Information

Coding Sequence
atgaatattgATTCAATAgcaaattgtgcaataaaatccgaagtgattttaacagaaacatttgcattttctggaaaatatgaagATTGTGGTGAGAGTCAAGAACCGAAAACAGAACTAGCAGTTTATGaagaattgtttaaatgtaaagaagaaGATTCTGTAGAGCACATAGACATACACGCTGCTCCCATGCAATGcattaatgaatgtaattttaagatgcCAGAGCTGAAAACTTCAAGAATTCGCAAtgaatacatttgtaatgaatgtactTATAAGACATTCttcaaaagtaatctaaagagacatataaaaattcataaaggcGATGACATTACCTgtaacaaatataagtgtaaagaatgtaattataaaacaatgcagaaatatcaactaaaggaacatgtcaaaattcatacagggaatgaatataagtgtaaagaatgtgattataaaacagtgtggaaatatcaactaaaggaacacgtcaaaattcatacaggggatgaatataagtgtatagaatgtgattataaaacagtgcacaAAAGTAGTCTAAAtgcacacatcaaaattcatacaggtaatgaatacaagtgtgaagaatgtgattataaaacagtgtggaaaaagcAACTACAtgcacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcacaAAAGTAGTCTAAAtgcacacatcaaaattcatacaggtaatgaatacaagtgtgaagaatgtgattataaaacagtgtggaaaaagcAACTACAtgcacacatcaaaattcattacagatgtgattataaaacagtgtggaaatatcaactaaaggaacacgtcaaaattcatacaggggatgaatataagtgtatagaatgtgattataaaacagtgcacaAAAGTAGTCTAAAtgcacacatcaaaattcatacaggtaatgaatacaagtgtgaagaatgtgattataaaacagtgtggaaaaagcAACTACAtgcacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatgtggCAGagtaatctaaagaaacatatcaaaatgcacacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgtggaaagatCAACTAAATGcgcacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgtggaaaaaacaactaaaaaaacacatcaaaattcatacaggggatgaatataagtgtgaagaatgtgattataaaacagtgtggaaaaaacaactaaacgaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactaaacgagcacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgtggaaaaaccAACTAAacgaacacatcaaaattcatacaggggatgaatataagtgtaaagaatgtgattataaaactgtgaacaaatatcaactaaaggaacataccagaattcatacaggtgatgaatataagtgcaaagaatgtgattataaaacagtgtggaaacgtAGTTTAAAgtcacacatcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaagatcaactaaagaaacatatcaaaattcatacaggtgatgaatataagtgtaaaaactgtgattacaaaacagtgcagaaaaatcgactaaaggaacatgtcaaacttcatacaaatgatgaatataagtgtaaagaatgtgattataaaactgtgcggAAAGATCAACTAaagaaacacatcaaaattcattcaggtgatgaatataagtgtaaaaactgtgattacaaaacagtgcagaaaaatcgactaaaggaacatgtcaaacttcatacaaatgatgaatataagtataaagaatgtgattataaaactgtgtga
Protein Sequence
MNIDSIANCAIKSEVILTETFAFSGKYEDCGESQEPKTELAVYEELFKCKEEDSVEHIDIHAAPMQCINECNFKMPELKTSRIRNEYICNECTYKTFFKSNLKRHIKIHKGDDITCNKYKCKECNYKTMQKYQLKEHVKIHTGNEYKCKECDYKTVWKYQLKEHVKIHTGDEYKCIECDYKTVHKSSLNAHIKIHTGNEYKCEECDYKTVWKKQLHAHIKIHTGDEYKCKECDYKTVWKNQLKEHIKIHTGDEYKCKECDYKTVWKNQLKEHIKIHTGDEYKCKECDYKTVHKSSLNAHIKIHTGNEYKCEECDYKTVWKKQLHAHIKIHYRCDYKTVWKYQLKEHVKIHTGDEYKCIECDYKTVHKSSLNAHIKIHTGNEYKCEECDYKTVWKKQLHAHIKIHTGDEYKCKECDYKTMWQSNLKKHIKMHTGDEYKCKECNYKTVWKDQLNAHIKIHTGDEYKCKECNYKTVWKKQLKKHIKIHTGDEYKCEECDYKTVWKKQLNEHIKIHTGDEYKCKECDYKTVWKNQLNEHIKIHTGDEYKCKECNYKTVWKNQLNEHIKIHTGDEYKCKECDYKTVNKYQLKEHTRIHTGDEYKCKECDYKTVWKRSLKSHIKIHTGDEYKCKECDYKTVWKDQLKKHIKIHTGDEYKCKNCDYKTVQKNRLKEHVKLHTNDEYKCKECDYKTVRKDQLKKHIKIHSGDEYKCKNCDYKTVQKNRLKEHVKLHTNDEYKYKECDYKTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-