Lyun000039.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:481907-484003[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.2 16 6.3 0.3 1 23 89 111 89 111 0.97
2 21 0.00056 0.0079 16.7 2.2 1 23 139 161 139 161 0.98
3 21 6.8e-05 0.00096 19.6 1.6 1 23 167 189 167 189 0.99
4 21 0.014 0.2 12.3 0.8 1 23 194 216 194 216 0.98
5 21 0.014 0.2 12.3 0.8 1 23 221 243 221 243 0.98
6 21 0.00015 0.0022 18.5 1.7 1 23 248 270 248 270 0.99
7 21 4.3e-05 0.0006 20.2 1.5 1 23 275 297 275 297 0.99
8 21 0.028 0.39 11.4 1.6 1 23 302 324 302 324 0.98
9 21 0.027 0.38 11.4 1.3 1 23 329 351 329 351 0.99
10 21 5.1e-05 0.00073 20.0 0.7 1 23 356 378 356 378 0.99
11 21 5.5e-05 0.00078 19.9 3.8 1 23 383 405 383 405 0.99
12 21 4.8e-05 0.00068 20.1 2.3 1 23 410 432 410 432 0.99
13 21 0.0048 0.067 13.8 1.0 1 23 437 459 437 459 0.99
14 21 0.00019 0.0027 18.2 0.9 1 23 464 486 464 486 0.99
15 21 2.1e-05 0.0003 21.2 0.9 1 23 491 513 491 513 0.99
16 21 0.022 0.31 11.7 2.2 1 23 518 540 518 540 0.98
17 21 0.0048 0.068 13.8 1.0 1 23 545 567 545 567 0.98
18 21 2.1e-05 0.0003 21.2 0.9 1 23 572 594 572 594 0.99
19 21 0.0077 0.11 13.1 2.5 1 23 599 621 599 621 0.98
20 21 0.0041 0.058 14.0 0.9 1 23 626 648 626 648 0.98
21 21 0.013 0.18 12.4 2.5 1 23 653 675 653 675 0.99

Sequence Information

Coding Sequence
ATGGATATTGATTCAATAgcaaattgtgcaataaaatccgaagtgattttaacagaaacatttgcgttttctggaaaatatgaagattgtggTGAGAAAGAACCGAAAACAGAACTAGCAGTTTATGAtgaattgtttaaatgtaaagaagaaGATTCTGTAGCGCAACACCCTCCACCGATGCAATGcagtaataaatgtaattttatgacaATGGAGAAGGATTATCAgatagaacatttgaaaattattaaaaatgttttatattcttGTGAGGAATGTAACTTTATAACACAGTTAGAATCTTCAATAAAagagcatttaaaaattcacaatgGAGTAGATGGTCAATATGTtatggaagaaaaaaaattcaagatgcCAGAGGTTAAAACTGCAagaatttgcaataaatacagTTGTAATGAATGTACTTATACAACATTCGTCAAACGTAATCTAAAGAGACATATAAAAGTTCATAAAGGTgatgacaaatataagtgtaaagaatgtgactataaatcaGTGaggaaaaatcaactaaaggaacacatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacggtgtggaaaaATCTACTAAAAGAACACATAAAAATCCATACAggggatgaatataagtgtaaagaatgtgattataaaacggtgtggaaaaatctgctaaaggaacacatcaaaattcatacaggcgatgaatataagtgtacagaatgtgCCTATAAAACTGTgaggaaaagtaatctaaagtaccacatcaaaattcatacaggtgatgaatataagtgtgccgagtgtgattataaaactgtgaggaaaagtaatctaaagtaccacctcaaaattcatacaggtgaagaatataagtgtaaagagtgtgattataaaactgtatggaaatatcaactaaaggaacataacagaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaaccatgtggaaaaatcaactaaaggaacacatcaaagtTCATACAGGGgttaaatataagtgtaaagaatgtgattataaaatagTGTCAAAAAGTCAACTAAAGGCAcacgttaaaattcatacaggtgatgaatataagtgtacagaatgtgattataaaacagtgcggaaaaatCACCTAAAGgaacacatgaaaattcatacaggtgatgaatataaatgtacagaatgtgattataaaactgtgagGAAAACTAATCTAAAGTaccacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatgaattaaagaaccacatcaaaattcatacaggtgataaatataagtgtaaagaatgtgattatgaaacagtgcgaaaagatcgactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtacagaatgtgattacaaaacagtgcggaaaaatcaactaaatgcgcacatcaaaattcatacacgtgatgaatataaatgtaaagaatgtgattacaaaacagtatggaaaagtcatCTTAAgggacatgttaaaattcatgcaggagatgaatataagtgtaaagaatgtgattataaaactgtgtggaaatatcaactaaaggcacatgtcaaaattcatacaggtgatgaatataaatgtacagaatgtgattataaaacagtgcggaaaaatcaactgaatgcacacatcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattacaaaacagtatggaaaagtcatctaaaggaacatgttaaaattcatgtaggtgatgaatataagtgtaaagaatgtgattatagaacTGTGTGGAAATATCAACTAAAGGctcatgtgaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggcgTGGAAAAGTTGTCTAAAGatacacattaaaattcatgcaggtgacaaaatataa
Protein Sequence
MDIDSIANCAIKSEVILTETFAFSGKYEDCGEKEPKTELAVYDELFKCKEEDSVAQHPPPMQCSNKCNFMTMEKDYQIEHLKIIKNVLYSCEECNFITQLESSIKEHLKIHNGVDGQYVMEEKKFKMPEVKTARICNKYSCNECTYTTFVKRNLKRHIKVHKGDDKYKCKECDYKSVRKNQLKEHIKIHTGDEYKCKECDYKTVWKNLLKEHIKIHTGDEYKCKECDYKTVWKNLLKEHIKIHTGDEYKCTECAYKTVRKSNLKYHIKIHTGDEYKCAECDYKTVRKSNLKYHLKIHTGEEYKCKECDYKTVWKYQLKEHNRIHTGDEYKCKECDYKTMWKNQLKEHIKVHTGVKYKCKECDYKIVSKSQLKAHVKIHTGDEYKCTECDYKTVRKNHLKEHMKIHTGDEYKCTECDYKTVRKTNLKYHIKIHTGDEYKCKECDYKTVWKNELKNHIKIHTGDKYKCKECDYETVRKDRLKEHIKIHTGDEYKCTECDYKTVRKNQLNAHIKIHTRDEYKCKECDYKTVWKSHLKGHVKIHAGDEYKCKECDYKTVWKYQLKAHVKIHTGDEYKCTECDYKTVRKNQLNAHIKIHTGDEYKCKECDYKTVWKSHLKEHVKIHVGDEYKCKECDYRTVWKYQLKAHVKIHTGDEYKCKECDYKTAWKSCLKIHIKIHAGDKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-