Lyun003140.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000480.1:23943-26945[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.0038 0.053 14.1 0.9 1 23 171 193 171 193 0.99
2 29 0.069 0.98 10.1 1.7 1 23 198 220 198 220 0.98
3 29 0.018 0.25 12.0 2.1 1 23 225 247 225 247 0.97
4 29 0.031 0.44 11.2 1.7 1 23 252 274 252 274 0.98
5 29 3.7e-05 0.00052 20.4 1.4 1 23 279 301 279 301 0.99
6 29 0.04 0.57 10.9 2.5 1 23 306 328 306 328 0.98
7 29 0.0025 0.036 14.7 2.5 1 23 333 355 333 355 0.99
8 29 0.016 0.22 12.2 0.8 1 23 367 389 367 389 0.98
9 29 0.0056 0.079 13.6 3.5 1 23 394 416 394 416 0.99
10 29 0.0046 0.065 13.8 0.5 1 23 421 443 421 443 0.99
11 29 0.082 1.2 9.9 2.0 1 23 448 470 448 470 0.97
12 29 0.018 0.25 12.0 2.1 1 23 475 497 475 497 0.97
13 29 9.4e-05 0.0013 19.1 1.5 1 23 502 524 502 524 0.98
14 29 0.04 0.57 10.9 2.5 1 23 529 551 529 551 0.98
15 29 0.0025 0.036 14.7 2.5 1 23 556 578 556 578 0.99
16 29 2.4e-05 0.00034 21.0 1.9 1 23 583 605 583 605 0.99
17 29 0.04 0.57 10.9 2.5 1 23 610 632 610 632 0.98
18 29 0.0056 0.079 13.6 3.5 1 23 637 659 637 659 0.99
19 29 0.0046 0.065 13.8 0.5 1 23 664 686 664 686 0.99
20 29 0.00053 0.0075 16.8 2.2 1 23 691 713 691 713 0.98
21 29 0.018 0.25 12.0 2.1 1 23 718 740 718 740 0.97
22 29 5.2e-05 0.00073 20.0 1.1 1 23 745 767 745 767 0.98
23 29 0.04 0.57 10.9 2.5 1 23 772 794 772 794 0.98
24 29 0.0025 0.036 14.7 2.5 1 23 799 821 799 821 0.99
25 29 2.4e-05 0.00034 21.0 1.9 1 23 826 848 826 848 0.99
26 29 0.055 0.78 10.4 0.9 1 23 853 875 853 875 0.98
27 29 0.14 2 9.1 1.0 1 23 880 902 880 902 0.97
28 29 0.04 0.57 10.9 1.3 1 23 907 929 907 929 0.98
29 29 0.043 0.62 10.8 3.4 1 23 934 956 934 956 0.99

Sequence Information

Coding Sequence
ATGGATATTAATTCTACTGAAAGTTGTACAATAAAATCggaaattattttaacagaaacattttgtgGAAACTATGAAGATTATGGCAATAAAGAACTGAAAACAGAGCCAGTAGATTACAATGAATTGTTTAAGTGTAAGGAAGAAGATGATCCTGCAGAGCACATGGATACATCTGCTGCCCTAATACAACAGTGTTCTGGTAATGAGCGTAACTTTACAACAATGGAAAAATATTCTCCGCTAGgacatttaaaaactacaaaaaatgttcaatatttttgtaagcaatGTAACTTTAGAACTAATTTGGAATGTTTCATAAAAAAGCATTCGAAAAATCAGAAGGGAGTAGATGATACTTATATTACTAAGGAATGTAGTTTCTCTTTAGCATCACTTGTAAATACGTCAAGAAGTGATGatgaatatatttgtaatgaacaTAATTTTACTACATTGAAGAAAAAAACTCTAAGGAGACATATGACAATTCATataggtgacaaatataagtgtaaagaatgtgattataaaacagtgtggaaaaaacaattaactgcgcacattaaaattcacagtggtaatgaatataagtgtcttgaatgtaattacaaaacatgGCGGAAATATAGtttaaaagaacatgtcaaaattcatacgggcgaggaatataagtgtaaagaatgtgattataaatcatTACGGAAatatagtctaaaggaacatgtcaaaattcatacgggcgaggaatataagtgtaaaaaatgtgattataaaacagtgtggaaacaaaatctaaaggaacatgtcaaaattcacactggtaatgaatataagtgtaatgaatgtgattataaaacagtgcggaaatatAATCTAAtggaacatctcaaaattcatacaggtgaggaatataagtgtaaaaaatgtgattataaaacagtgtggaaacaaagtctaaagaaacatgtcaaaattcacactggtaatgaatataagtgtaacgaatgtgattacaaaacatcagcgaaacatagtctaaaggaacatgtgaaaattcatacaggaacatctcaaaattcatacagtgaggaatataagtgtaatgaatgtgattataaaacagtgtggaaacaaaatctaaaggaacatgtcaaaattcacactggtattgaatataagtgtaacaaatgtgattataaaacatcagcgaaacatagtctaaaggaacatgtgaaaattcatacaggtgaggaatataagtgtaacgaatgtgattataaaacagtgtggaaaaatcaattaactgcacacattaaaattcacagtggtaatgaatataagtgtcttgaatgtaattacaaaacattgCGGAAATAtagtctaaaagaacatgtcaaaattcatacgggtgaggaatataagtgtaaagaatgtgattataaatcatTACGGAAatatagtctaaaggaacatgtcaaaattcataaaggtgatAAATACAcgtgtaatgaatgtaattataaaacagtgcggaaatatAATCTAAtggaacatctcaaaattcatacaggtgaggaatataagtgtaaaaaatgtgattataaaacagtgtggaaacaaagtctaaagaaacatgttaaaattcacactggtaatgaatataagtgtaacgaatgtgattacaaaacatcagcgaaacatagtctaaaggaacatgtgaaaattcatacaggtgaggaatataagtgtaacgaatgtgattataaaacagtgcggaaatataatctaaaggaacatctcaaaattcatacaggtgaggaatataagtgtaaaaaatgtgattataaaacagtgtggaaacaaagtctaaagaaacatgtcaaaattcacactggtattgaatataagtgtaacaaatgtgattataaaacatcagcaaaacatagtctaaaggaacatgtgaaaattcatacaggtgaggaatataagtgtaacgaatgtgattataaaacagtgtggaaaaatcaattaactgcacacattaaaattcacagtggtaatgaatataagtgtcttgaatgtaattacaaaacatCGCGGAAATAtagtctaaaagaacatgtcaaaattcatacgggtgaggaatataagtgtaaagaatgtgattataaatcatTACGGAAATatagtttaaaggaacatgtcaaaattcataaaggtgatAAATACacgtgtaacgaatgtgattataaaacagtgcggaaatatAATCTAAtggaacatctcaaaattcatacagatgaggaatataagtgtaaaaaatgtgattataaaacagtgtggaaacaaagtctaaagaaacatgtcaaaattcacactggtaatgaatataagtgtaacgaatgtgattataaaacatcagcgaaacatagtctaaaggaacatgtgaaaattcatacaggtgaggaatataagtgtaatgaatgtgattataaaacagtgcggaaatataatctaaaggaacatctcaaaattcatataggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaacaaaatctaaaggaacatggcaaaattcataccggtgaggaatataagtgtaatgaatgtgattataaaacattggcGAAATATAGTctgaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaaaattgtgattataaaacagtgtggaaacaaaatctaaaggaacatgtcaaaattcacactggtaatgaatataagtgtaaagaatgtaattataagacagtgtggaaaaaacaactaaaatcaCATTTGAAAAGACATACAGATGATttacatatttga
Protein Sequence
MDINSTESCTIKSEIILTETFCGNYEDYGNKELKTEPVDYNELFKCKEEDDPAEHMDTSAALIQQCSGNERNFTTMEKYSPLGHLKTTKNVQYFCKQCNFRTNLECFIKKHSKNQKGVDDTYITKECSFSLASLVNTSRSDDEYICNEHNFTTLKKKTLRRHMTIHIGDKYKCKECDYKTVWKKQLTAHIKIHSGNEYKCLECNYKTWRKYSLKEHVKIHTGEEYKCKECDYKSLRKYSLKEHVKIHTGEEYKCKKCDYKTVWKQNLKEHVKIHTGNEYKCNECDYKTVRKYNLMEHLKIHTGEEYKCKKCDYKTVWKQSLKKHVKIHTGNEYKCNECDYKTSAKHSLKEHVKIHTGTSQNSYSEEYKCNECDYKTVWKQNLKEHVKIHTGIEYKCNKCDYKTSAKHSLKEHVKIHTGEEYKCNECDYKTVWKNQLTAHIKIHSGNEYKCLECNYKTLRKYSLKEHVKIHTGEEYKCKECDYKSLRKYSLKEHVKIHKGDKYTCNECNYKTVRKYNLMEHLKIHTGEEYKCKKCDYKTVWKQSLKKHVKIHTGNEYKCNECDYKTSAKHSLKEHVKIHTGEEYKCNECDYKTVRKYNLKEHLKIHTGEEYKCKKCDYKTVWKQSLKKHVKIHTGIEYKCNKCDYKTSAKHSLKEHVKIHTGEEYKCNECDYKTVWKNQLTAHIKIHSGNEYKCLECNYKTSRKYSLKEHVKIHTGEEYKCKECDYKSLRKYSLKEHVKIHKGDKYTCNECDYKTVRKYNLMEHLKIHTDEEYKCKKCDYKTVWKQSLKKHVKIHTGNEYKCNECDYKTSAKHSLKEHVKIHTGEEYKCNECDYKTVRKYNLKEHLKIHIGEEYKCKECDYKTVWKQNLKEHGKIHTGEEYKCNECDYKTLAKYSLKEHVKIHTGEEYKCKNCDYKTVWKQNLKEHVKIHTGNEYKCKECNYKTVWKKQLKSHLKRHTDDLHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-